HEADER ISOMERASE/ISOMERASE INHIBITOR 05-APR-11 3RF4 TITLE ANCYLOSTOMA CEYLANICUM MIF IN COMPLEX WITH FUROSEMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 2-117; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANCYLOSTOMA CEYLANICUM; SOURCE 3 ORGANISM_TAXID: 53326; SOURCE 4 GENE: ACEMIF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PROTEIN-SMALL MOLECULE COMPLEX, ISOMERASE, ISOMERASE-ISOMERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHO,E.LOLIS REVDAT 3 13-SEP-23 3RF4 1 REMARK LINK REVDAT 2 05-DEC-12 3RF4 1 LINK REVDAT 1 12-OCT-11 3RF4 0 JRNL AUTH Y.CHO,J.J.VERMEIRE,J.S.MERKEL,L.LENG,X.DU,R.BUCALA, JRNL AUTH 2 M.CAPPELLO,E.LOLIS JRNL TITL DRUG REPOSITIONING AND PHARMACOPHORE IDENTIFICATION IN THE JRNL TITL 2 DISCOVERY OF HOOKWORM MIF INHIBITORS. JRNL REF CHEM.BIOL. V. 18 1089 2011 JRNL REFN ISSN 1074-5521 JRNL PMID 21944748 JRNL DOI 10.1016/J.CHEMBIOL.2011.07.011 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0091 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 42127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2248 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2941 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2675 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -1.48000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2877 ; 0.050 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3878 ; 2.340 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 6.166 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;35.001 ;24.454 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 482 ;10.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;14.135 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 455 ; 0.224 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2156 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1760 ; 1.542 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2872 ; 2.269 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1094 ; 3.997 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 981 ; 5.793 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064852. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING MONOCHROMETER REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44447 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 37.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26600 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OS5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, 0.16-0.24 M ZINC REMARK 280 ACETATE, 15-25% PEG3000, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.49367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.98733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.98733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.49367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -380.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.49367 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 12 CD CE NZ REMARK 470 GLU A 28 CD OE1 OE2 REMARK 470 LYS A 88 CE NZ REMARK 470 ARG B 4 CZ NH1 NH2 REMARK 470 GLU B 28 CD OE1 OE2 REMARK 470 LYS B 88 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 71 N1 IMD B 118 2.09 REMARK 500 OD1 ASP A 71 O HOH A 157 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 20 CB GLU A 20 CG 0.182 REMARK 500 GLU A 20 CD GLU A 20 OE2 -0.071 REMARK 500 GLU B 20 CB GLU B 20 CG 0.166 REMARK 500 VAL C 61 CB VAL C 61 CG1 0.136 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 4 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG C 21 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG C 21 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP C 71 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -0.84 63.10 REMARK 500 ALA B 51 -2.73 73.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 118 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 ACT A 120 O 95.6 REMARK 620 3 ACT A 120 OXT 150.9 55.9 REMARK 620 4 HOH A 243 O 103.2 104.7 91.3 REMARK 620 5 IMD C 118 N1 108.4 128.5 88.4 112.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 119 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 20 OE2 REMARK 620 2 GLU A 20 OE2 94.2 REMARK 620 3 ASP A 24 OD2 110.1 105.4 REMARK 620 4 ASP A 24 OD2 132.8 112.0 100.3 REMARK 620 5 ASP A 24 OD1 91.5 85.1 154.9 54.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 119 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 70 OD2 REMARK 620 2 IMD B 117 N1 112.0 REMARK 620 3 ACT B 121 O 99.4 118.1 REMARK 620 4 ASP C 11 OD2 107.3 114.5 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 119 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 IMD A 117 N1 REMARK 620 2 ASP B 11 OD2 114.1 REMARK 620 3 ACT B 122 O 122.1 99.7 REMARK 620 4 HOH B 242 O 105.6 101.6 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 120 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 20 OE2 REMARK 620 2 ASP B 24 OD2 116.1 REMARK 620 3 ASP C 24 OD2 109.4 102.0 REMARK 620 4 ASP C 24 OD2 75.6 46.9 94.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 120 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 71 OD2 REMARK 620 2 ASP C 71 OD2 123.9 REMARK 620 3 ACT C 121 O 84.0 88.1 REMARK 620 4 ACT C 121 OXT 117.0 98.0 49.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUN C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD C 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD C 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 122 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OS5 RELATED DB: PDB REMARK 900 RELATED ID: 3RF5 RELATED DB: PDB DBREF 3RF4 A 1 116 UNP A4GRE3 A4GRE3_9BILA 2 117 DBREF 3RF4 B 1 116 UNP A4GRE3 A4GRE3_9BILA 2 117 DBREF 3RF4 C 1 116 UNP A4GRE3 A4GRE3_9BILA 2 117 SEQRES 1 A 116 PRO MET VAL ARG VAL ALA THR ASN LEU PRO ASP LYS ASP SEQRES 2 A 116 VAL PRO ALA ASN PHE GLU GLU ARG LEU THR ASP LEU LEU SEQRES 3 A 116 ALA GLU SER MET ASN LYS PRO ARG ASN ARG ILE ALA ILE SEQRES 4 A 116 GLU VAL LEU ALA GLY GLN ARG ILE THR HIS GLY ALA SER SEQRES 5 A 116 ARG ASN PRO VAL ALA VAL ILE LYS VAL GLU SER ILE GLY SEQRES 6 A 116 ALA LEU SER ALA ASP ASP ASN ILE ARG HIS THR GLN LYS SEQRES 7 A 116 ILE THR GLN PHE CYS GLN ASP THR LEU LYS LEU PRO LYS SEQRES 8 A 116 ASP LYS VAL ILE ILE THR TYR PHE ASP LEU GLN PRO ILE SEQRES 9 A 116 HIS VAL GLY PHE ASN GLY THR THR VAL ALA ALA ALA SEQRES 1 B 116 PRO MET VAL ARG VAL ALA THR ASN LEU PRO ASP LYS ASP SEQRES 2 B 116 VAL PRO ALA ASN PHE GLU GLU ARG LEU THR ASP LEU LEU SEQRES 3 B 116 ALA GLU SER MET ASN LYS PRO ARG ASN ARG ILE ALA ILE SEQRES 4 B 116 GLU VAL LEU ALA GLY GLN ARG ILE THR HIS GLY ALA SER SEQRES 5 B 116 ARG ASN PRO VAL ALA VAL ILE LYS VAL GLU SER ILE GLY SEQRES 6 B 116 ALA LEU SER ALA ASP ASP ASN ILE ARG HIS THR GLN LYS SEQRES 7 B 116 ILE THR GLN PHE CYS GLN ASP THR LEU LYS LEU PRO LYS SEQRES 8 B 116 ASP LYS VAL ILE ILE THR TYR PHE ASP LEU GLN PRO ILE SEQRES 9 B 116 HIS VAL GLY PHE ASN GLY THR THR VAL ALA ALA ALA SEQRES 1 C 116 PRO MET VAL ARG VAL ALA THR ASN LEU PRO ASP LYS ASP SEQRES 2 C 116 VAL PRO ALA ASN PHE GLU GLU ARG LEU THR ASP LEU LEU SEQRES 3 C 116 ALA GLU SER MET ASN LYS PRO ARG ASN ARG ILE ALA ILE SEQRES 4 C 116 GLU VAL LEU ALA GLY GLN ARG ILE THR HIS GLY ALA SER SEQRES 5 C 116 ARG ASN PRO VAL ALA VAL ILE LYS VAL GLU SER ILE GLY SEQRES 6 C 116 ALA LEU SER ALA ASP ASP ASN ILE ARG HIS THR GLN LYS SEQRES 7 C 116 ILE THR GLN PHE CYS GLN ASP THR LEU LYS LEU PRO LYS SEQRES 8 C 116 ASP LYS VAL ILE ILE THR TYR PHE ASP LEU GLN PRO ILE SEQRES 9 C 116 HIS VAL GLY PHE ASN GLY THR THR VAL ALA ALA ALA HET FUN A 201 21 HET IMD A 117 5 HET ZN A 118 1 HET ZN A 119 1 HET ACT A 120 4 HET ACT A 121 4 HET FUN B 202 21 HET IMD B 117 5 HET IMD B 118 5 HET ZN B 119 1 HET ZN B 120 1 HET ACT B 121 4 HET ACT B 122 4 HET ACT B 123 4 HET FUN C 203 21 HET IMD C 117 5 HET IMD C 118 5 HET ZN C 119 1 HET ZN C 120 1 HET ACT C 121 4 HET ACT C 122 4 HETNAM FUN 5-(AMINOSULFONYL)-4-CHLORO-2-[(2-FURYLMETHYL) HETNAM 2 FUN AMINO]BENZOIC ACID HETNAM IMD IMIDAZOLE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETSYN FUN FUROSEMIDE FORMUL 4 FUN 3(C12 H11 CL N2 O5 S) FORMUL 5 IMD 5(C3 H5 N2 1+) FORMUL 6 ZN 6(ZN 2+) FORMUL 8 ACT 7(C2 H3 O2 1-) FORMUL 25 HOH *273(H2 O) HELIX 1 1 PRO A 10 VAL A 14 5 5 HELIX 2 2 ASN A 17 ASN A 31 1 15 HELIX 3 3 PRO A 33 ARG A 36 5 4 HELIX 4 4 SER A 68 LYS A 88 1 21 HELIX 5 5 PRO A 90 ASP A 92 5 3 HELIX 6 6 GLN A 102 ILE A 104 5 3 HELIX 7 7 PRO B 10 VAL B 14 5 5 HELIX 8 8 ASN B 17 ASN B 31 1 15 HELIX 9 9 PRO B 33 ARG B 36 5 4 HELIX 10 10 SER B 68 LYS B 88 1 21 HELIX 11 11 GLN B 102 ILE B 104 5 3 HELIX 12 12 PRO C 10 VAL C 14 5 5 HELIX 13 13 ASN C 17 MET C 30 1 14 HELIX 14 14 PRO C 33 ARG C 36 5 4 HELIX 15 15 SER C 68 LYS C 88 1 21 HELIX 16 16 GLN C 102 ILE C 104 5 3 SHEET 1 A 7 THR B 111 THR B 112 0 SHEET 2 A 7 VAL B 106 PHE B 108 -1 N PHE B 108 O THR B 111 SHEET 3 A 7 VAL A 94 ASP A 100 -1 N ILE A 96 O GLY B 107 SHEET 4 A 7 ALA A 57 SER A 63 1 N ILE A 59 O ILE A 95 SHEET 5 A 7 MET A 2 THR A 7 -1 N ALA A 6 O VAL A 58 SHEET 6 A 7 ALA A 38 LEU A 42 1 O LEU A 42 N VAL A 5 SHEET 7 A 7 ARG C 46 HIS C 49 -1 O ARG C 46 N VAL A 41 SHEET 1 B 7 ARG A 46 HIS A 49 0 SHEET 2 B 7 ALA B 38 LEU B 42 -1 O VAL B 41 N ARG A 46 SHEET 3 B 7 MET B 2 THR B 7 1 N VAL B 5 O LEU B 42 SHEET 4 B 7 ALA B 57 SER B 63 -1 O GLU B 62 N MET B 2 SHEET 5 B 7 VAL B 94 ASP B 100 1 O ILE B 95 N ILE B 59 SHEET 6 B 7 VAL C 106 PHE C 108 -1 O GLY C 107 N ILE B 96 SHEET 7 B 7 THR C 111 THR C 112 -1 O THR C 111 N PHE C 108 SHEET 1 C 7 THR A 111 THR A 112 0 SHEET 2 C 7 VAL A 106 PHE A 108 -1 N PHE A 108 O THR A 111 SHEET 3 C 7 VAL C 94 ASP C 100 -1 O ILE C 96 N GLY A 107 SHEET 4 C 7 ALA C 57 SER C 63 1 N ILE C 59 O ILE C 95 SHEET 5 C 7 MET C 2 THR C 7 -1 N ALA C 6 O VAL C 58 SHEET 6 C 7 ALA C 38 LEU C 42 1 O GLU C 40 N VAL C 5 SHEET 7 C 7 ARG B 46 HIS B 49 -1 N THR B 48 O ILE C 39 LINK OD2 ASP A 11 ZN ZN A 118 1555 1555 2.04 LINK OE2 GLU A 20 ZN ZN A 119 1555 1555 1.85 LINK OE2 GLU A 20 ZN ZN A 119 4465 1555 2.11 LINK OD2 ASP A 24 ZN ZN A 119 1555 1555 2.18 LINK OD2 ASP A 24 ZN ZN A 119 4465 1555 1.88 LINK OD1 ASP A 24 ZN ZN A 119 4465 1555 2.63 LINK OD2 ASP A 70 ZN ZN C 119 3454 1555 2.02 LINK N1 IMD A 117 ZN ZN B 119 1555 1555 2.10 LINK ZN ZN A 118 O ACT A 120 1555 1555 1.90 LINK ZN ZN A 118 OXT ACT A 120 1555 1555 2.66 LINK ZN ZN A 118 O HOH A 243 1555 1555 2.13 LINK ZN ZN A 118 N1 IMD C 118 1555 1555 2.06 LINK OD2 ASP B 11 ZN ZN B 119 1555 1555 1.93 LINK OE2 GLU B 20 ZN ZN B 120 1555 1555 2.06 LINK OD2 ASP B 24 ZN ZN B 120 1555 1555 1.86 LINK N1 IMD B 117 ZN ZN C 119 1555 1555 2.04 LINK ZN ZN B 119 O ACT B 122 1555 1555 1.99 LINK ZN ZN B 119 O HOH B 242 1555 1555 2.10 LINK ZN ZN B 120 OD2 ASP C 24 1555 4455 1.88 LINK ZN ZN B 120 OD2 ASP C 24 4565 1555 1.88 LINK O ACT B 121 ZN ZN C 119 1555 1555 1.94 LINK OD2 ASP C 11 ZN ZN C 119 1555 1555 1.89 LINK OD2 ASP C 71 ZN ZN C 120 1555 1555 1.99 LINK OD2 ASP C 71 ZN ZN C 120 6555 1555 2.05 LINK ZN ZN C 120 O ACT C 121 1555 1555 2.42 LINK ZN ZN C 120 OXT ACT C 121 1555 1555 2.66 SITE 1 AC1 13 PRO A 1 MET A 2 LYS A 32 ARG A 36 SITE 2 AC1 13 SER A 63 ILE A 64 VAL A 106 PHE A 108 SITE 3 AC1 13 VAL A 113 HOH A 259 HOH A 456 HIS C 49 SITE 4 AC1 13 ILE C 95 SITE 1 AC2 5 GLY A 44 ARG A 46 ASP B 11 ZN B 119 SITE 2 AC2 5 ACT B 122 SITE 1 AC3 4 ASP A 11 ACT A 120 HOH A 243 IMD C 118 SITE 1 AC4 2 GLU A 20 ASP A 24 SITE 1 AC5 5 ASP A 11 ZN A 118 HOH A 365 ARG C 46 SITE 2 AC5 5 IMD C 118 SITE 1 AC6 1 ASP A 92 SITE 1 AC7 12 HIS A 49 ILE A 95 PRO B 1 MET B 2 SITE 2 AC7 12 LYS B 32 ARG B 36 ILE B 64 VAL B 106 SITE 3 AC7 12 PHE B 108 VAL B 113 HOH B 458 HOH B 459 SITE 1 AC8 6 ASP A 70 GLY B 44 ARG B 46 ACT B 121 SITE 2 AC8 6 ASP C 11 ZN C 119 SITE 1 AC9 3 ASP B 71 HOH B 155 HOH B 292 SITE 1 BC1 4 IMD A 117 ASP B 11 ACT B 122 HOH B 242 SITE 1 BC2 4 GLU B 20 ASP B 24 GLU C 20 ASP C 24 SITE 1 BC3 6 ASP A 70 ARG B 46 ARG B 53 IMD B 117 SITE 2 BC3 6 ASP C 11 ZN C 119 SITE 1 BC4 5 ARG A 46 ARG A 53 IMD A 117 ASP B 11 SITE 2 BC4 5 ZN B 119 SITE 1 BC5 1 ASP B 92 SITE 1 BC6 12 HIS B 49 ILE B 95 PRO C 1 MET C 2 SITE 2 BC6 12 LYS C 32 ARG C 36 ILE C 64 VAL C 106 SITE 3 BC6 12 PHE C 108 VAL C 113 HOH C 460 HOH C 463 SITE 1 BC7 1 ALA C 116 SITE 1 BC8 5 ASP A 11 ZN A 118 ACT A 120 GLY C 44 SITE 2 BC8 5 ARG C 46 SITE 1 BC9 4 ASP A 70 IMD B 117 ACT B 121 ASP C 11 SITE 1 CC1 2 ASP C 71 ACT C 121 SITE 1 CC2 7 MET C 30 ASN C 31 ALA C 66 SER C 68 SITE 2 CC2 7 ASP C 71 ZN C 120 HOH C 245 SITE 1 CC3 1 ASP C 92 CRYST1 86.690 86.690 115.481 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011535 0.006660 0.000000 0.00000 SCALE2 0.000000 0.013320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008659 0.00000