HEADER LYASE 08-APR-11 3RGG TITLE CRYSTAL STRUCTURE OF TREPONEMA DENTICOLA PURE BOUND TO AIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE, PURE PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 4.1.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TREPONEMA DENTICOLA; SOURCE 3 ORGANISM_TAXID: 158; SOURCE 4 GENE: PURE, TDE_0687; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS PURINE BIOSYNTHESIS, CARBOXYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR I.I.MATHEWS,C.M.STARKS,T.J.KAPPOCK REVDAT 3 03-APR-24 3RGG 1 REMARK LINK REVDAT 2 01-JUN-11 3RGG 1 JRNL REVDAT 1 18-MAY-11 3RGG 0 JRNL AUTH S.TRANCHIMAND,C.M.STARKS,I.I.MATHEWS,S.C.HOCKINGS, JRNL AUTH 2 T.J.KAPPOCK JRNL TITL TREPONEMA DENTICOLA PURE IS A BACTERIAL AIR CARBOXYLASE. JRNL REF BIOCHEMISTRY V. 50 4623 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21548610 JRNL DOI 10.1021/BI102033A REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 48510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2607 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3313 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : 2.22000 REMARK 3 B33 (A**2) : -1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.459 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4873 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3338 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6590 ; 1.674 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8200 ; 0.980 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 621 ; 5.792 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;34.951 ;23.988 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 853 ;14.381 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;12.906 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 758 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5308 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 928 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3107 ; 0.731 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1254 ; 0.216 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4985 ; 1.212 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1766 ; 2.183 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1604 ; 3.362 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7043 -12.7694 19.1905 REMARK 3 T TENSOR REMARK 3 T11: 0.2368 T22: 0.0448 REMARK 3 T33: 0.3110 T12: -0.0929 REMARK 3 T13: 0.0870 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.0488 L22: 0.7982 REMARK 3 L33: 1.8396 L12: -0.2221 REMARK 3 L13: -0.1074 L23: -0.1718 REMARK 3 S TENSOR REMARK 3 S11: 0.1142 S12: 0.0417 S13: 0.6702 REMARK 3 S21: -0.0861 S22: 0.0445 S23: -0.1121 REMARK 3 S31: -0.5713 S32: 0.2510 S33: -0.1587 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3233 -43.0094 33.9321 REMARK 3 T TENSOR REMARK 3 T11: 0.0283 T22: 0.4329 REMARK 3 T33: 0.0496 T12: 0.0952 REMARK 3 T13: -0.0123 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.0582 L22: 0.9799 REMARK 3 L33: 2.1955 L12: 0.3851 REMARK 3 L13: -0.3617 L23: 0.0911 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: -0.3952 S13: -0.0066 REMARK 3 S21: 0.0254 S22: 0.0163 S23: -0.1610 REMARK 3 S31: 0.2029 S32: 0.8602 S33: -0.0043 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 156 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1712 -64.5656 13.0178 REMARK 3 T TENSOR REMARK 3 T11: 0.3310 T22: 0.0399 REMARK 3 T33: 0.2056 T12: -0.0105 REMARK 3 T13: 0.0677 T23: -0.0743 REMARK 3 L TENSOR REMARK 3 L11: 1.9540 L22: 1.1551 REMARK 3 L33: 2.5259 L12: -0.3829 REMARK 3 L13: 0.0514 L23: -0.2852 REMARK 3 S TENSOR REMARK 3 S11: -0.1004 S12: 0.2273 S13: -0.4992 REMARK 3 S21: -0.1558 S22: 0.0477 S23: -0.0400 REMARK 3 S31: 0.8262 S32: 0.0629 S33: 0.0527 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 156 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5019 -34.0460 -1.8679 REMARK 3 T TENSOR REMARK 3 T11: 0.0424 T22: 0.3664 REMARK 3 T33: 0.0188 T12: 0.0265 REMARK 3 T13: 0.0062 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 1.4678 L22: 1.1342 REMARK 3 L33: 2.3388 L12: -0.0363 REMARK 3 L13: 0.0487 L23: -0.1936 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: 0.5596 S13: 0.1308 REMARK 3 S21: -0.2039 S22: -0.0289 S23: -0.0270 REMARK 3 S31: 0.0485 S32: -0.4261 S33: -0.0415 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 111.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51257 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 37.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.86500 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NATIVE COORDINATE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-16% (W/V) PEG 1000, 0.1 M MAGNESIUM REMARK 280 CHLORIDE, 0.1 M IMIDAZOLE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.07000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.07000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.19500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.56500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.19500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.56500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.07000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.19500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.56500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.07000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.19500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.56500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 37180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.07000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 218 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CXM A 1 REMARK 465 LYS A 158 REMARK 465 ARG A 159 REMARK 465 CXM B 1 REMARK 465 LYS B 158 REMARK 465 ARG B 159 REMARK 465 CXM C 1 REMARK 465 LEU C 157 REMARK 465 LYS C 158 REMARK 465 ARG C 159 REMARK 465 LEU D 157 REMARK 465 LYS D 158 REMARK 465 ARG D 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 42 52.65 -141.88 REMARK 500 ARG A 68 -143.04 57.97 REMARK 500 ARG B 68 -144.17 58.48 REMARK 500 ARG C 68 -137.86 52.24 REMARK 500 THR D 42 54.30 -141.60 REMARK 500 ARG D 68 -144.48 58.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AIR A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AIR B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AIR C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AIR D 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RG8 RELATED DB: PDB REMARK 900 UNLIGANDED FORM OF THE SAME PROTEIN. DBREF 3RGG A 1 159 UNP Q73PV9 Q73PV9_TREDE 1 159 DBREF 3RGG B 1 159 UNP Q73PV9 Q73PV9_TREDE 1 159 DBREF 3RGG C 1 159 UNP Q73PV9 Q73PV9_TREDE 1 159 DBREF 3RGG D 1 159 UNP Q73PV9 Q73PV9_TREDE 1 159 SEQRES 1 A 159 CXM ARG PRO LEU VAL ILE ILE LEU MET GLY SER SER SER SEQRES 2 A 159 ASP MET GLY HIS ALA GLU LYS ILE ALA SER GLU LEU LYS SEQRES 3 A 159 THR PHE GLY ILE GLU TYR ALA ILE ARG ILE GLY SER ALA SEQRES 4 A 159 HIS LYS THR ALA GLU HIS VAL VAL SER MET LEU LYS GLU SEQRES 5 A 159 TYR GLU ALA LEU ASP ARG PRO LYS LEU TYR ILE THR ILE SEQRES 6 A 159 ALA GLY ARG SER ASN ALA LEU SER GLY PHE VAL ASP GLY SEQRES 7 A 159 PHE VAL LYS GLY ALA THR ILE ALA CYS PRO PRO PRO SER SEQRES 8 A 159 ASP SER PHE ALA GLY ALA ASP ILE TYR SER SER LEU ARG SEQRES 9 A 159 MET PRO SER GLY ILE SER PRO ALA LEU VAL LEU GLU PRO SEQRES 10 A 159 LYS ASN ALA ALA LEU LEU ALA ALA ARG ILE PHE SER LEU SEQRES 11 A 159 TYR ASP LYS GLU ILE ALA ASP SER VAL LYS SER TYR MET SEQRES 12 A 159 GLU SER ASN ALA GLN LYS ILE ILE GLU ASP ASP SER LYS SEQRES 13 A 159 LEU LYS ARG SEQRES 1 B 159 CXM ARG PRO LEU VAL ILE ILE LEU MET GLY SER SER SER SEQRES 2 B 159 ASP MET GLY HIS ALA GLU LYS ILE ALA SER GLU LEU LYS SEQRES 3 B 159 THR PHE GLY ILE GLU TYR ALA ILE ARG ILE GLY SER ALA SEQRES 4 B 159 HIS LYS THR ALA GLU HIS VAL VAL SER MET LEU LYS GLU SEQRES 5 B 159 TYR GLU ALA LEU ASP ARG PRO LYS LEU TYR ILE THR ILE SEQRES 6 B 159 ALA GLY ARG SER ASN ALA LEU SER GLY PHE VAL ASP GLY SEQRES 7 B 159 PHE VAL LYS GLY ALA THR ILE ALA CYS PRO PRO PRO SER SEQRES 8 B 159 ASP SER PHE ALA GLY ALA ASP ILE TYR SER SER LEU ARG SEQRES 9 B 159 MET PRO SER GLY ILE SER PRO ALA LEU VAL LEU GLU PRO SEQRES 10 B 159 LYS ASN ALA ALA LEU LEU ALA ALA ARG ILE PHE SER LEU SEQRES 11 B 159 TYR ASP LYS GLU ILE ALA ASP SER VAL LYS SER TYR MET SEQRES 12 B 159 GLU SER ASN ALA GLN LYS ILE ILE GLU ASP ASP SER LYS SEQRES 13 B 159 LEU LYS ARG SEQRES 1 C 159 CXM ARG PRO LEU VAL ILE ILE LEU MET GLY SER SER SER SEQRES 2 C 159 ASP MET GLY HIS ALA GLU LYS ILE ALA SER GLU LEU LYS SEQRES 3 C 159 THR PHE GLY ILE GLU TYR ALA ILE ARG ILE GLY SER ALA SEQRES 4 C 159 HIS LYS THR ALA GLU HIS VAL VAL SER MET LEU LYS GLU SEQRES 5 C 159 TYR GLU ALA LEU ASP ARG PRO LYS LEU TYR ILE THR ILE SEQRES 6 C 159 ALA GLY ARG SER ASN ALA LEU SER GLY PHE VAL ASP GLY SEQRES 7 C 159 PHE VAL LYS GLY ALA THR ILE ALA CYS PRO PRO PRO SER SEQRES 8 C 159 ASP SER PHE ALA GLY ALA ASP ILE TYR SER SER LEU ARG SEQRES 9 C 159 MET PRO SER GLY ILE SER PRO ALA LEU VAL LEU GLU PRO SEQRES 10 C 159 LYS ASN ALA ALA LEU LEU ALA ALA ARG ILE PHE SER LEU SEQRES 11 C 159 TYR ASP LYS GLU ILE ALA ASP SER VAL LYS SER TYR MET SEQRES 12 C 159 GLU SER ASN ALA GLN LYS ILE ILE GLU ASP ASP SER LYS SEQRES 13 C 159 LEU LYS ARG SEQRES 1 D 159 CXM ARG PRO LEU VAL ILE ILE LEU MET GLY SER SER SER SEQRES 2 D 159 ASP MET GLY HIS ALA GLU LYS ILE ALA SER GLU LEU LYS SEQRES 3 D 159 THR PHE GLY ILE GLU TYR ALA ILE ARG ILE GLY SER ALA SEQRES 4 D 159 HIS LYS THR ALA GLU HIS VAL VAL SER MET LEU LYS GLU SEQRES 5 D 159 TYR GLU ALA LEU ASP ARG PRO LYS LEU TYR ILE THR ILE SEQRES 6 D 159 ALA GLY ARG SER ASN ALA LEU SER GLY PHE VAL ASP GLY SEQRES 7 D 159 PHE VAL LYS GLY ALA THR ILE ALA CYS PRO PRO PRO SER SEQRES 8 D 159 ASP SER PHE ALA GLY ALA ASP ILE TYR SER SER LEU ARG SEQRES 9 D 159 MET PRO SER GLY ILE SER PRO ALA LEU VAL LEU GLU PRO SEQRES 10 D 159 LYS ASN ALA ALA LEU LEU ALA ALA ARG ILE PHE SER LEU SEQRES 11 D 159 TYR ASP LYS GLU ILE ALA ASP SER VAL LYS SER TYR MET SEQRES 12 D 159 GLU SER ASN ALA GLN LYS ILE ILE GLU ASP ASP SER LYS SEQRES 13 D 159 LEU LYS ARG MODRES 3RGG CXM D 1 MET N-CARBOXYMETHIONINE HET CXM D 1 11 HET AIR A1001 19 HET AIR B1002 19 HET AIR C1003 19 HET AIR D1004 19 HETNAM CXM N-CARBOXYMETHIONINE HETNAM AIR 5-AMINOIMIDAZOLE RIBONUCLEOTIDE FORMUL 4 CXM C6 H11 N O4 S FORMUL 5 AIR 4(C8 H14 N3 O7 P) FORMUL 9 HOH *283(H2 O) HELIX 1 1 SER A 11 SER A 13 5 3 HELIX 2 2 ASP A 14 PHE A 28 1 15 HELIX 3 3 THR A 42 ALA A 55 1 14 HELIX 4 4 ALA A 71 VAL A 80 1 10 HELIX 5 5 ASP A 92 ASP A 98 5 7 HELIX 6 6 ILE A 99 ARG A 104 1 6 HELIX 7 7 GLU A 116 LEU A 130 1 15 HELIX 8 8 ASP A 132 LEU A 157 1 26 HELIX 9 9 SER B 11 SER B 13 5 3 HELIX 10 10 ASP B 14 PHE B 28 1 15 HELIX 11 11 THR B 42 ALA B 55 1 14 HELIX 12 12 ALA B 71 VAL B 80 1 10 HELIX 13 13 ASP B 92 ALA B 97 5 6 HELIX 14 14 ASP B 98 ARG B 104 1 7 HELIX 15 15 GLU B 116 LEU B 130 1 15 HELIX 16 16 ASP B 132 LEU B 157 1 26 HELIX 17 17 SER C 11 SER C 13 5 3 HELIX 18 18 ASP C 14 PHE C 28 1 15 HELIX 19 19 THR C 42 ALA C 55 1 14 HELIX 20 20 ALA C 71 VAL C 80 1 10 HELIX 21 21 ASP C 92 ALA C 97 5 6 HELIX 22 22 ASP C 98 ARG C 104 1 7 HELIX 23 23 GLU C 116 SER C 129 1 14 HELIX 24 24 ASP C 132 LYS C 156 1 25 HELIX 25 25 SER D 11 SER D 13 5 3 HELIX 26 26 ASP D 14 PHE D 28 1 15 HELIX 27 27 THR D 42 ALA D 55 1 14 HELIX 28 28 ALA D 71 VAL D 80 1 10 HELIX 29 29 ASP D 92 ASP D 98 5 7 HELIX 30 30 ILE D 99 ARG D 104 1 6 HELIX 31 31 GLU D 116 SER D 129 1 14 HELIX 32 32 ASP D 132 LYS D 156 1 25 SHEET 1 A 5 GLU A 31 ILE A 36 0 SHEET 2 A 5 LEU A 4 MET A 9 1 N ILE A 7 O ALA A 33 SHEET 3 A 5 LYS A 60 ILE A 65 1 O LEU A 61 N ILE A 6 SHEET 4 A 5 THR A 84 ALA A 86 1 O ILE A 85 N THR A 64 SHEET 5 A 5 ALA A 112 LEU A 113 1 O ALA A 112 N THR A 84 SHEET 1 B 5 GLU B 31 ILE B 36 0 SHEET 2 B 5 LEU B 4 MET B 9 1 N ILE B 7 O ALA B 33 SHEET 3 B 5 LYS B 60 ILE B 65 1 O ILE B 63 N ILE B 6 SHEET 4 B 5 THR B 84 ALA B 86 1 O ILE B 85 N TYR B 62 SHEET 5 B 5 ALA B 112 LEU B 113 1 O ALA B 112 N ALA B 86 SHEET 1 C 5 GLU C 31 ILE C 36 0 SHEET 2 C 5 LEU C 4 MET C 9 1 N ILE C 7 O ALA C 33 SHEET 3 C 5 LYS C 60 ILE C 65 1 O LEU C 61 N ILE C 6 SHEET 4 C 5 THR C 84 ALA C 86 1 O ILE C 85 N THR C 64 SHEET 5 C 5 ALA C 112 LEU C 113 1 O ALA C 112 N ALA C 86 SHEET 1 D 5 GLU D 31 ILE D 36 0 SHEET 2 D 5 LEU D 4 MET D 9 1 N ILE D 7 O ALA D 33 SHEET 3 D 5 LYS D 60 ILE D 65 1 O LEU D 61 N ILE D 6 SHEET 4 D 5 THR D 84 ALA D 86 1 O ILE D 85 N TYR D 62 SHEET 5 D 5 ALA D 112 LEU D 113 1 O ALA D 112 N THR D 84 LINK C CXM D 1 N ARG D 2 1555 1555 1.33 SITE 1 AC1 14 GLY A 10 SER A 11 ASP A 14 SER A 38 SITE 2 AC1 14 HIS A 40 LYS A 41 ALA A 66 GLY A 67 SITE 3 AC1 14 SER A 69 HOH A 160 HOH A 161 HOH A 162 SITE 4 AC1 14 PRO D 106 SER D 107 SITE 1 AC2 16 GLY B 10 SER B 11 SER B 13 ASP B 14 SITE 2 AC2 16 SER B 38 HIS B 40 LYS B 41 ALA B 66 SITE 3 AC2 16 GLY B 67 ARG B 68 SER B 69 HOH B 160 SITE 4 AC2 16 HOH B 161 HOH B 162 PRO C 106 SER C 107 SITE 1 AC3 15 PRO B 106 SER B 107 GLY C 10 SER C 11 SITE 2 AC3 15 SER C 13 ASP C 14 SER C 38 HIS C 40 SITE 3 AC3 15 LYS C 41 ALA C 66 GLY C 67 SER C 69 SITE 4 AC3 15 HOH C 160 HOH C 161 HOH C 162 SITE 1 AC4 16 PRO A 106 SER A 107 GLY D 10 SER D 11 SITE 2 AC4 16 SER D 13 ASP D 14 SER D 38 HIS D 40 SITE 3 AC4 16 LYS D 41 ALA D 66 GLY D 67 SER D 69 SITE 4 AC4 16 HOH D 160 HOH D 161 HOH D 162 HOH D 177 CRYST1 84.390 155.130 88.140 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011850 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011346 0.00000