HEADER IMMUNE SYSTEM 09-APR-11 3RGV TITLE A SINGLE TCR BOUND TO MHCI AND MHC II REVEALS SWITCHABLE TCR TITLE 2 CONFORMERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: YAE62 TCR A CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: YAE62 TCR B CHAIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN; COMPND 12 CHAIN: C; COMPND 13 FRAGMENT: RESIDUES 22-296; COMPND 14 SYNONYM: H-2K(B); COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 18 CHAIN: D; COMPND 19 FRAGMENT: RESIDUES 21-119; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: PEPTIDE; COMPND 23 CHAIN: E; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET30; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 21 ORGANISM_COMMON: MOUSE; SOURCE 22 ORGANISM_TAXID: 10090; SOURCE 23 GENE: H2-K1, H2-K; SOURCE 24 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 25 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 27 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 28 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 29 EXPRESSION_SYSTEM_PLASMID: PACUW51; SOURCE 30 MOL_ID: 4; SOURCE 31 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 32 ORGANISM_COMMON: MOUSE; SOURCE 33 ORGANISM_TAXID: 10090; SOURCE 34 GENE: B2M; SOURCE 35 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 36 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 38 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 39 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 40 EXPRESSION_SYSTEM_PLASMID: PACUW51; SOURCE 41 MOL_ID: 5; SOURCE 42 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 43 ORGANISM_COMMON: MOUSE; SOURCE 44 ORGANISM_TAXID: 10090; SOURCE 45 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 46 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 47 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 48 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 49 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 50 EXPRESSION_SYSTEM_PLASMID: PACUW51 KEYWDS TCR, MHC, MHC CLASS I, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.DAI,E.HUSEBY,J.SCOTT-BROWNE,K.RUBTSOVA,C.PINILLA,F.CRAWFORD, AUTHOR 2 P.MARRACK,L.YIN,J.W.KAPPLER REVDAT 3 13-SEP-23 3RGV 1 SEQADV REVDAT 2 03-AUG-11 3RGV 1 JRNL REVDAT 1 20-JUL-11 3RGV 0 JRNL AUTH L.YIN,E.HUSEBY,J.SCOTT-BROWNE,K.RUBTSOVA,C.PINILLA, JRNL AUTH 2 F.CRAWFORD,P.MARRACK,S.DAI,J.W.KAPPLER JRNL TITL A SINGLE T CELL RECEPTOR BOUND TO MAJOR HISTOCOMPATIBILITY JRNL TITL 2 COMPLEX CLASS I AND CLASS II GLYCOPROTEINS REVEALS JRNL TITL 3 SWITCHABLE TCR CONFORMERS. JRNL REF IMMUNITY V. 35 23 2011 JRNL REFN ISSN 1074-7613 JRNL PMID 21683626 JRNL DOI 10.1016/J.IMMUNI.2011.04.017 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 30372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4296 - 6.3798 1.00 2956 153 0.1775 0.2137 REMARK 3 2 6.3798 - 5.0939 0.99 2833 158 0.1683 0.2300 REMARK 3 3 5.0939 - 4.4588 0.99 2837 151 0.1392 0.1689 REMARK 3 4 4.4588 - 4.0552 0.98 2758 167 0.1501 0.2096 REMARK 3 5 4.0552 - 3.7668 0.98 2777 141 0.1778 0.2430 REMARK 3 6 3.7668 - 3.5461 0.97 2742 138 0.1904 0.2892 REMARK 3 7 3.5461 - 3.3695 0.95 2675 143 0.2103 0.2437 REMARK 3 8 3.3695 - 3.2235 0.91 2543 138 0.2696 0.3190 REMARK 3 9 3.2235 - 3.0999 0.80 2245 122 0.3587 0.4518 REMARK 3 10 3.0999 - 2.9934 0.77 2164 115 0.3470 0.4055 REMARK 3 11 2.9934 - 2.9001 0.82 2307 109 0.3372 0.4252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 20.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 2.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -20.07700 REMARK 3 B22 (A**2) : 10.50990 REMARK 3 B33 (A**2) : 9.56710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6778 REMARK 3 ANGLE : 1.348 9207 REMARK 3 CHIRALITY : 0.090 969 REMARK 3 PLANARITY : 0.005 1205 REMARK 3 DIHEDRAL : 22.178 2412 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RGV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30372 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 3C60 AND 2ZSV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, PH 7, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.43600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.20450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.28250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.43600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.20450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.28250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.43600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.20450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.28250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.43600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.20450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.28250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 125 CG CD CE NZ REMARK 480 LYS A 147 CG CD CE NZ REMARK 480 GLU A 193 CG CD OE1 OE2 REMARK 480 ASP D 85 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 172 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 -15.76 77.59 REMARK 500 ASN A 92 115.81 -171.75 REMARK 500 ASP A 115 59.56 -143.84 REMARK 500 SER A 127 -17.13 75.88 REMARK 500 SER A 175 146.79 -170.25 REMARK 500 PHE A 186 2.85 82.31 REMARK 500 THR B 37 129.16 -39.43 REMARK 500 SER B 85 177.32 176.64 REMARK 500 PHE B 117 144.97 -173.72 REMARK 500 ASP B 149 46.66 -73.94 REMARK 500 HIS B 150 73.83 -103.22 REMARK 500 ASP B 169 151.08 -45.86 REMARK 500 GLN B 176 109.22 -164.43 REMARK 500 ALA B 178 -77.31 -60.44 REMARK 500 ARG C 14 74.04 -115.95 REMARK 500 PHE C 33 -19.42 -145.13 REMARK 500 ASN C 86 55.01 34.10 REMARK 500 ASP C 106 31.35 -79.66 REMARK 500 TYR C 123 -44.94 -131.00 REMARK 500 ASP C 137 -178.85 -172.17 REMARK 500 ALA C 177 -78.79 -57.77 REMARK 500 THR C 182 119.97 -161.03 REMARK 500 PRO C 210 -166.54 -70.35 REMARK 500 LEU C 224 57.28 -97.92 REMARK 500 VAL C 247 145.75 -175.94 REMARK 500 PRO D 14 106.18 -52.18 REMARK 500 GLN D 29 32.14 71.37 REMARK 500 LYS D 48 53.91 -96.58 REMARK 500 TRP D 60 -10.55 92.27 REMARK 500 PRO D 90 108.96 -56.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 164 ASP A 165 -35.95 REMARK 500 REMARK 500 REMARK: NULL DBREF 3RGV C 1 275 UNP P01901 HA1B_MOUSE 22 296 DBREF 3RGV D 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 3RGV A 1 200 PDB 3RGV 3RGV 1 200 DBREF 3RGV B 1 236 PDB 3RGV 3RGV 1 236 DBREF 3RGV E 1 13 PDB 3RGV 3RGV 1 13 SEQADV 3RGV CYS C 84 UNP P01901 TYR 105 ENGINEERED MUTATION SEQADV 3RGV SER C 121 UNP P01901 CYS 142 ENGINEERED MUTATION SEQADV 3RGV GLY D 0 UNP P01887 EXPRESSION TAG SEQRES 1 A 200 ASP SER VAL THR GLN MET GLN GLY GLN VAL THR LEU SER SEQRES 2 A 200 GLU ASN ASP PHE LEU PHE ILE ASN CYS THR TYR SER THR SEQRES 3 A 200 THR GLY TYR PRO THR LEU PHE TRP TYR VAL GLN TYR SER SEQRES 4 A 200 GLY GLU GLY PRO GLN LEU LEU LEU GLN VAL THR THR ALA SEQRES 5 A 200 ASN ASN LYS GLY SER SER ARG GLY PHE GLU ALA THR TYR SEQRES 6 A 200 ASP LYS GLY THR THR SER PHE HIS LEU GLN LYS THR SER SEQRES 7 A 200 VAL GLN GLU ILE ASP SER ALA VAL TYR TYR CYS ALA ALA SEQRES 8 A 200 ASN SER GLY THR TYR GLN ARG PHE GLY THR GLY THR LYS SEQRES 9 A 200 LEU GLN VAL VAL PRO ASN ILE GLN ASN PRO ASP PRO ALA SEQRES 10 A 200 VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP LYS SER SEQRES 11 A 200 VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR ASN VAL SEQRES 12 A 200 SER GLN SER LYS ASP SER ASP VAL TYR ILE THR ASP LYS SEQRES 13 A 200 CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SER ASN SEQRES 14 A 200 SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE ALA CYS SEQRES 15 A 200 ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU ASP THR SEQRES 16 A 200 PHE PHE PRO SER PRO SEQRES 1 B 236 ALA VAL THR GLN SER PRO ARG ASN LYS VAL ALA VAL THR SEQRES 2 B 236 GLY GLY LYS VAL THR LEU SER CYS ASN GLN THR ASN ASN SEQRES 3 B 236 HIS ASN ASN MET TYR TRP TYR ARG GLN ASP THR GLY HIS SEQRES 4 B 236 GLY LEU ARG LEU ILE HIS TYR SER TYR GLY ALA GLY SER SEQRES 5 B 236 THR GLU LYS GLY ASP ILE PRO ASP GLY TYR LYS ALA SER SEQRES 6 B 236 ARG PRO SER GLN GLU ASN PHE SER LEU ILE LEU GLU LEU SEQRES 7 B 236 ALA THR PRO SER GLN THR SER VAL TYR PHE CYS ALA SER SEQRES 8 B 236 GLY ASP PHE TRP GLY ASP THR LEU TYR PHE GLY ALA GLY SEQRES 9 B 236 THR ARG LEU SER VAL LEU GLU ASP LEU LYS ASN VAL PHE SEQRES 10 B 236 PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA GLU SEQRES 11 B 236 ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA SEQRES 12 B 236 THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP SEQRES 13 B 236 VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP SEQRES 14 B 236 PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER SEQRES 15 B 236 ARG TYR ALA LEU SER SER ARG LEU ARG VAL SER ALA THR SEQRES 16 B 236 PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL SEQRES 17 B 236 GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN SEQRES 18 B 236 ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU SEQRES 19 B 236 ALA TRP SEQRES 1 C 275 GLY PRO HIS SER LEU ARG TYR PHE VAL THR ALA VAL SER SEQRES 2 C 275 ARG PRO GLY LEU GLY GLU PRO ARG TYR MET GLU VAL GLY SEQRES 3 C 275 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 C 275 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA ARG TRP MET SEQRES 5 C 275 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 C 275 LYS ALA LYS GLY ASN GLU GLN SER PHE ARG VAL ASP LEU SEQRES 7 C 275 ARG THR LEU LEU GLY CYS TYR ASN GLN SER LYS GLY GLY SEQRES 8 C 275 SER HIS THR ILE GLN VAL ILE SER GLY CYS GLU VAL GLY SEQRES 9 C 275 SER ASP GLY ARG LEU LEU ARG GLY TYR GLN GLN TYR ALA SEQRES 10 C 275 TYR ASP GLY SER ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 C 275 LYS THR TRP THR ALA ALA ASP MET ALA ALA LEU ILE THR SEQRES 12 C 275 LYS HIS LYS TRP GLU GLN ALA GLY GLU ALA GLU ARG LEU SEQRES 13 C 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 C 275 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 C 275 ASP SER PRO LYS ALA HIS VAL THR HIS HIS SER ARG PRO SEQRES 16 C 275 GLU ASP LYS VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 C 275 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 C 275 GLU GLU LEU ILE GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 C 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 C 275 VAL VAL PRO LEU GLY LYS GLU GLN TYR TYR THR CYS HIS SEQRES 21 C 275 VAL TYR HIS GLN GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 C 275 TRP GLU SEQRES 1 D 100 GLY ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG SEQRES 2 D 100 HIS PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS SEQRES 3 D 100 TYR VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN SEQRES 4 D 100 MET LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SEQRES 5 D 100 SER ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE SEQRES 6 D 100 LEU ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR SEQRES 7 D 100 TYR ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO SEQRES 8 D 100 LYS THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 E 13 TRP ILE TYR VAL TYR ARG PRO MET GLY CYS GLY GLY SER HELIX 1 1 ARG A 162 ASP A 165 5 4 HELIX 2 2 THR B 80 THR B 84 5 5 HELIX 3 3 SER B 127 GLN B 135 1 9 HELIX 4 4 ALA B 194 ASN B 199 1 6 HELIX 5 5 ALA C 49 GLU C 53 5 5 HELIX 6 6 GLY C 56 TYR C 85 1 30 HELIX 7 7 ASP C 137 ALA C 150 1 14 HELIX 8 8 GLY C 151 GLY C 162 1 12 HELIX 9 9 GLY C 162 LEU C 180 1 19 HELIX 10 10 ILE C 225 MET C 228 5 4 HELIX 11 11 GLY C 252 TYR C 257 5 6 SHEET 1 A 2 SER A 2 THR A 4 0 SHEET 2 A 2 THR A 23 SER A 25 -1 O SER A 25 N SER A 2 SHEET 1 B 5 GLN A 9 SER A 13 0 SHEET 2 B 5 THR A 103 VAL A 108 1 O VAL A 108 N LEU A 12 SHEET 3 B 5 ALA A 85 ASN A 92 -1 N ALA A 85 O LEU A 105 SHEET 4 B 5 THR A 31 GLN A 37 -1 N TYR A 35 O TYR A 88 SHEET 5 B 5 GLN A 44 VAL A 49 -1 O GLN A 44 N VAL A 36 SHEET 1 C 4 LEU A 18 ILE A 20 0 SHEET 2 C 4 LEU A 74 LYS A 76 -1 O LYS A 76 N LEU A 18 SHEET 3 C 4 PHE A 61 THR A 64 -1 N GLU A 62 O GLN A 75 SHEET 4 C 4 LYS A 55 SER A 58 -1 N SER A 58 O PHE A 61 SHEET 1 D 8 TYR A 152 ILE A 153 0 SHEET 2 D 8 PHE A 166 TRP A 174 -1 O TRP A 174 N TYR A 152 SHEET 3 D 8 SER A 130 THR A 135 -1 N CYS A 132 O ALA A 173 SHEET 4 D 8 ALA A 117 ASP A 123 -1 N TYR A 119 O LEU A 133 SHEET 5 D 8 GLU B 120 GLU B 125 -1 O GLU B 125 N ARG A 122 SHEET 6 D 8 LYS B 136 PHE B 146 -1 O VAL B 140 N PHE B 124 SHEET 7 D 8 TYR B 184 SER B 193 -1 O TYR B 184 N PHE B 146 SHEET 8 D 8 VAL B 166 THR B 168 -1 N CYS B 167 O ARG B 189 SHEET 1 E 8 CYS A 157 MET A 161 0 SHEET 2 E 8 PHE A 166 TRP A 174 -1 O PHE A 166 N MET A 161 SHEET 3 E 8 SER A 130 THR A 135 -1 N CYS A 132 O ALA A 173 SHEET 4 E 8 ALA A 117 ASP A 123 -1 N TYR A 119 O LEU A 133 SHEET 5 E 8 GLU B 120 GLU B 125 -1 O GLU B 125 N ARG A 122 SHEET 6 E 8 LYS B 136 PHE B 146 -1 O VAL B 140 N PHE B 124 SHEET 7 E 8 TYR B 184 SER B 193 -1 O TYR B 184 N PHE B 146 SHEET 8 E 8 LEU B 173 LYS B 174 -1 N LEU B 173 O ALA B 185 SHEET 1 F 4 VAL B 2 SER B 5 0 SHEET 2 F 4 VAL B 17 GLN B 23 -1 O SER B 20 N SER B 5 SHEET 3 F 4 ASN B 71 LEU B 76 -1 O LEU B 74 N LEU B 19 SHEET 4 F 4 TYR B 62 SER B 65 -1 N LYS B 63 O ILE B 75 SHEET 1 G 6 ASN B 8 VAL B 12 0 SHEET 2 G 6 THR B 105 LEU B 110 1 O SER B 108 N LYS B 9 SHEET 3 G 6 SER B 85 GLY B 92 -1 N TYR B 87 O THR B 105 SHEET 4 G 6 ASN B 29 ASP B 36 -1 N TYR B 33 O PHE B 88 SHEET 5 G 6 GLY B 40 SER B 47 -1 O ILE B 44 N TRP B 32 SHEET 6 G 6 GLU B 54 LYS B 55 -1 O GLU B 54 N TYR B 46 SHEET 1 H 4 ASN B 8 VAL B 12 0 SHEET 2 H 4 THR B 105 LEU B 110 1 O SER B 108 N LYS B 9 SHEET 3 H 4 SER B 85 GLY B 92 -1 N TYR B 87 O THR B 105 SHEET 4 H 4 TYR B 100 PHE B 101 -1 O TYR B 100 N SER B 91 SHEET 1 I 4 LYS B 160 VAL B 162 0 SHEET 2 I 4 VAL B 151 VAL B 157 -1 N VAL B 157 O LYS B 160 SHEET 3 I 4 PHE B 204 PHE B 210 -1 O ARG B 205 N TRP B 156 SHEET 4 I 4 GLN B 229 ALA B 235 -1 O ALA B 235 N PHE B 204 SHEET 1 J 8 GLU C 46 PRO C 47 0 SHEET 2 J 8 THR C 31 ASP C 37 -1 N ARG C 35 O GLU C 46 SHEET 3 J 8 ARG C 21 VAL C 28 -1 N GLU C 24 O PHE C 36 SHEET 4 J 8 HIS C 3 VAL C 12 -1 N VAL C 12 O ARG C 21 SHEET 5 J 8 THR C 94 VAL C 103 -1 O VAL C 103 N HIS C 3 SHEET 6 J 8 LEU C 109 TYR C 118 -1 O ALA C 117 N GLN C 96 SHEET 7 J 8 SER C 121 LEU C 126 -1 O ILE C 124 N TYR C 116 SHEET 8 J 8 TRP C 133 ALA C 135 -1 O THR C 134 N ALA C 125 SHEET 1 K 4 LYS C 186 ARG C 194 0 SHEET 2 K 4 LYS C 198 PHE C 208 -1 O LYS C 198 N ARG C 194 SHEET 3 K 4 PHE C 241 PRO C 250 -1 O VAL C 249 N VAL C 199 SHEET 4 K 4 GLU C 229 LEU C 230 -1 N GLU C 229 O SER C 246 SHEET 1 L 4 LYS C 186 ARG C 194 0 SHEET 2 L 4 LYS C 198 PHE C 208 -1 O LYS C 198 N ARG C 194 SHEET 3 L 4 PHE C 241 PRO C 250 -1 O VAL C 249 N VAL C 199 SHEET 4 L 4 ARG C 234 PRO C 235 -1 N ARG C 234 O GLN C 242 SHEET 1 M 4 GLU C 222 GLU C 223 0 SHEET 2 M 4 THR C 214 LEU C 219 -1 N LEU C 219 O GLU C 222 SHEET 3 M 4 THR C 258 TYR C 262 -1 O THR C 258 N GLN C 218 SHEET 4 M 4 LEU C 270 LEU C 272 -1 O LEU C 272 N CYS C 259 SHEET 1 N 4 GLN D 6 SER D 11 0 SHEET 2 N 4 ASN D 21 PHE D 30 -1 O THR D 28 N GLN D 6 SHEET 3 N 4 PHE D 62 PHE D 70 -1 O ALA D 66 N CYS D 25 SHEET 4 N 4 GLU D 50 MET D 51 -1 N GLU D 50 O HIS D 67 SHEET 1 O 4 GLN D 6 SER D 11 0 SHEET 2 O 4 ASN D 21 PHE D 30 -1 O THR D 28 N GLN D 6 SHEET 3 O 4 PHE D 62 PHE D 70 -1 O ALA D 66 N CYS D 25 SHEET 4 O 4 SER D 55 PHE D 56 -1 N SER D 55 O TYR D 63 SHEET 1 P 4 LYS D 44 LYS D 45 0 SHEET 2 P 4 GLU D 36 LYS D 41 -1 N LYS D 41 O LYS D 44 SHEET 3 P 4 TYR D 78 LYS D 83 -1 O ARG D 81 N GLN D 38 SHEET 4 P 4 LYS D 91 TYR D 94 -1 O LYS D 91 N VAL D 82 SSBOND 1 CYS A 22 CYS A 89 1555 1555 2.04 SSBOND 2 CYS A 132 CYS A 182 1555 1555 2.06 SSBOND 3 CYS A 157 CYS B 167 1555 1555 2.06 SSBOND 4 CYS B 21 CYS B 89 1555 1555 2.05 SSBOND 5 CYS B 141 CYS B 206 1555 1555 2.05 SSBOND 6 CYS C 101 CYS C 164 1555 1555 2.07 SSBOND 7 CYS C 203 CYS C 259 1555 1555 2.04 SSBOND 8 CYS D 25 CYS D 80 1555 1555 2.06 CISPEP 1 ALA A 52 ASN A 53 0 -7.89 CISPEP 2 SER B 5 PRO B 6 0 -4.86 CISPEP 3 TYR B 147 PRO B 148 0 -0.57 CISPEP 4 PRO C 15 GLY C 16 0 0.25 CISPEP 5 TYR C 209 PRO C 210 0 6.03 CISPEP 6 ASP C 238 GLY C 239 0 6.65 CISPEP 7 TRP C 274 GLU C 275 0 6.81 CISPEP 8 HIS D 31 PRO D 32 0 -0.54 CRYST1 118.872 146.409 168.565 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005932 0.00000