HEADER DNA BINDING PROTEIN 11-APR-11 3RH2 TITLE CRYSTAL STRUCTURE OF A TETR-LIKE TRANSCRIPTIONAL REGULATOR (SAMA_0099) TITLE 2 FROM SHEWANELLA AMAZONENSIS SB2B AT 2.42 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL TETR-LIKE TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA AMAZONENSIS; SOURCE 3 ORGANISM_TAXID: 326297; SOURCE 4 STRAIN: SB2B; SOURCE 5 GENE: SAMA_0099; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DNA/RNA-BINDING 3-HELICAL BUNDLE, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3RH2 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3RH2 1 REMARK REVDAT 2 24-DEC-14 3RH2 1 TITLE REVDAT 1 04-MAY-11 3RH2 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL TETR-LIKE JRNL TITL 2 TRANSCRIPTIONAL REGULATOR (SAMA_0099) FROM SHEWANELLA JRNL TITL 3 AMAZONENSIS SB2B AT 2.42 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 762 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1025 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3660 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.4760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1720 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.09000 REMARK 3 B22 (A**2) : -2.09000 REMARK 3 B33 (A**2) : 4.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.680 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1835 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1258 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2477 ; 1.724 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3055 ; 1.010 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 2.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;30.754 ;23.978 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 329 ;13.638 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.953 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 270 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1998 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 388 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1064 ; 2.067 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 428 ; 0.475 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1719 ; 3.838 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 771 ; 6.911 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 752 ; 9.652 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5402 29.9371 13.8352 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.1792 REMARK 3 T33: 0.1134 T12: 0.0293 REMARK 3 T13: 0.0345 T23: 0.1185 REMARK 3 L TENSOR REMARK 3 L11: 3.4092 L22: 2.4395 REMARK 3 L33: 1.0418 L12: 0.1508 REMARK 3 L13: 0.9434 L23: 0.6798 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: 0.1588 S13: 0.0506 REMARK 3 S21: -0.2524 S22: -0.1131 S23: -0.2833 REMARK 3 S31: -0.0319 S32: 0.0036 S33: 0.0106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5.PHOSPHATE (PO4) FROM THE CRYSTALLIZATION SOLUTION AND GLYCEROL REMARK 3 (GOL) FROM THE CRYOPROTECTANT SOLUTION HAVE BEEN MODELED IN THE REMARK 3 SOLVENT STRUCTURE. 6.AN UNIDENTIFIED LIGAND (UNL) HAS BEEN REMARK 3 MODELED AT THE PUTATIVE LIGAND-BINDING SITE. REMARK 4 REMARK 4 3RH2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064922. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97934,0.97915 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 6, 2010 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15161 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 29.118 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.02500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R MERGE, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M KH2PO4, 1.6M NAH2PO4, 0.1M REMARK 280 PHOSPHATE CITRATE PH 4.2, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.77600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 61.76800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.76800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.16400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.76800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 61.76800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.38800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.76800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.76800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.16400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 61.76800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.76800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 12.38800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 24.77600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGEST THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 49.55200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN A 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CE NZ REMARK 470 LYS A 115 CE NZ REMARK 470 ILE A 168 CG1 CG2 CD1 REMARK 470 LYS A 188 CE NZ REMARK 470 GLN A 204 CD OE1 NE2 REMARK 470 SER A 210 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -109.16 -86.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 399142 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3RH2 A 1 211 UNP A1S1Q5 A1S1Q5_SHEAM 1 211 SEQADV 3RH2 GLY A 0 UNP A1S1Q5 EXPRESSION TAG SEQRES 1 A 212 GLY MSE LYS THR ARG ASP LYS ILE ILE GLN ALA SER LEU SEQRES 2 A 212 GLU LEU PHE ASN GLU HIS GLY GLU ARG THR ILE THR THR SEQRES 3 A 212 ASN HIS ILE ALA ALA HIS LEU ASP ILE SER PRO GLY ASN SEQRES 4 A 212 LEU TYR TYR HIS PHE ARG ASN LYS GLU ASP ILE ILE ARG SEQRES 5 A 212 CYS ILE PHE ASP GLN TYR GLU GLN HIS LEU LEU LEU GLY SEQRES 6 A 212 PHE LYS PRO TYR ALA ASP GLN LYS VAL ASP LEU GLU LEU SEQRES 7 A 212 LEU MSE SER TYR PHE ASP ALA MSE PHE TYR THR MSE TRP SEQRES 8 A 212 GLN PHE ARG PHE MSE TYR ALA ASN LEU ALA ASP ILE LEU SEQRES 9 A 212 ALA ARG ASP ASP THR LEU LYS ALA ARG TYR LEU LYS VAL SEQRES 10 A 212 GLN GLN ALA VAL LEU GLU GLN SER ILE ALA VAL LEU ASN SEQRES 11 A 212 GLN LEU LYS LYS ASP GLY ILE LEU GLN ILE GLU ASP GLU SEQRES 12 A 212 ARG ILE ALA ASP LEU ALA ASP THR ILE LYS MSE ILE ILE SEQRES 13 A 212 GLY PHE TRP ILE SER TYR LYS LEU THR GLN SER SER ILE SEQRES 14 A 212 ALA THR ILE SER LYS ALA SER LEU TYR GLU GLY LEU LEU SEQRES 15 A 212 ARG VAL LEU MSE ILE PHE LYS ALA TYR SER THR PRO ASP SEQRES 16 A 212 SER LEU ALA ASN PHE ASP ARG LEU GLU GLN HIS PHE ARG SEQRES 17 A 212 SER GLN SER ASN MODRES 3RH2 MSE A 1 MET SELENOMETHIONINE MODRES 3RH2 MSE A 79 MET SELENOMETHIONINE MODRES 3RH2 MSE A 85 MET SELENOMETHIONINE MODRES 3RH2 MSE A 89 MET SELENOMETHIONINE MODRES 3RH2 MSE A 95 MET SELENOMETHIONINE MODRES 3RH2 MSE A 153 MET SELENOMETHIONINE MODRES 3RH2 MSE A 185 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 79 8 HET MSE A 85 8 HET MSE A 89 8 HET MSE A 95 8 HET MSE A 153 8 HET MSE A 185 8 HET UNL A 301 8 HET PO4 A 302 5 HET PO4 A 303 5 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET GOL A 307 6 HET GOL A 308 6 HET GOL A 309 6 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 GOL 6(C3 H8 O3) FORMUL 11 HOH *38(H2 O) HELIX 1 1 LYS A 2 GLY A 19 1 18 HELIX 2 2 GLU A 20 ILE A 23 5 4 HELIX 3 3 THR A 24 ASP A 33 1 10 HELIX 4 4 SER A 35 PHE A 43 1 9 HELIX 5 5 ASN A 45 PHE A 65 1 21 HELIX 6 6 ASP A 74 PHE A 92 1 19 HELIX 7 7 PHE A 92 ASN A 98 1 7 HELIX 8 8 ASN A 98 ARG A 105 1 8 HELIX 9 9 ASP A 106 ASP A 134 1 29 HELIX 10 10 GLU A 140 GLU A 142 5 3 HELIX 11 11 ARG A 143 SER A 166 1 24 HELIX 12 12 SER A 172 ALA A 189 1 18 HELIX 13 13 THR A 192 SER A 210 1 19 LINK C MSE A 1 N LYS A 2 1555 1555 1.34 LINK C LEU A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N SER A 80 1555 1555 1.34 LINK C ALA A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N PHE A 86 1555 1555 1.33 LINK C THR A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N TRP A 90 1555 1555 1.31 LINK C PHE A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N TYR A 96 1555 1555 1.33 LINK C LYS A 152 N MSE A 153 1555 1555 1.34 LINK C MSE A 153 N ILE A 154 1555 1555 1.34 LINK C LEU A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N ILE A 186 1555 1555 1.35 SITE 1 AC1 2 TYR A 41 HIS A 42 SITE 1 AC2 1 HIS A 205 SITE 1 AC3 2 THR A 3 GOL A 308 SITE 1 AC4 2 TRP A 90 LYS A 173 SITE 1 AC5 2 THR A 24 ASN A 26 SITE 1 AC6 2 HIS A 27 HIS A 31 SITE 1 AC7 2 TYR A 41 GOL A 304 SITE 1 AC8 6 LEU A 63 GLY A 64 LYS A 66 GLN A 71 SITE 2 AC8 6 SER A 80 TYR A 81 CRYST1 123.536 123.536 49.552 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008095 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020181 0.00000 HETATM 1 N MSE A 1 39.697 14.343 -6.203 1.00 93.84 N ANISOU 1 N MSE A 1 12584 13368 9700 1766 234 -2262 N HETATM 2 CA MSE A 1 39.375 14.464 -4.718 1.00 93.45 C ANISOU 2 CA MSE A 1 12479 13033 9993 1656 133 -2002 C HETATM 3 C MSE A 1 38.650 13.186 -4.234 1.00 91.84 C ANISOU 3 C MSE A 1 12167 12574 10151 1674 -113 -2179 C HETATM 4 O MSE A 1 37.587 12.807 -4.771 1.00 92.35 O ANISOU 4 O MSE A 1 12277 12654 10155 1720 -287 -2324 O HETATM 5 CB MSE A 1 38.592 15.781 -4.353 1.00 91.28 C ANISOU 5 CB MSE A 1 12346 12793 9541 1569 117 -1657 C HETATM 6 CG MSE A 1 38.061 15.866 -2.874 1.00 87.63 C ANISOU 6 CG MSE A 1 11828 12070 9394 1462 0 -1431 C HETATM 7 SE MSE A 1 37.507 17.597 -1.953 0.75 88.75 SE ANISOU 7 SE MSE A 1 12079 12202 9439 1336 31 -989 SE HETATM 8 CE MSE A 1 36.460 18.552 -3.368 1.00101.97 C ANISOU 8 CE MSE A 1 13958 14131 10654 1400 -23 -969 C