HEADER TRANSFERASE 12-APR-11 3RHZ TITLE STRUCTURE AND FUNCTIONAL ANALYSIS OF A NEW SUBFAMILY OF TITLE 2 GLYCOSYLTRANSFERASES REQUIRED FOR GLYCOSYLATION OF SERINE-RICH TITLE 3 STREPTOCOCCAL ADHESIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOTIDE SUGAR SYNTHETASE-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GTF3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PARASANGUINIS; SOURCE 3 ORGANISM_TAXID: 1318; SOURCE 4 GENE: NSS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.ZHU,J.LI,H.WU REVDAT 4 28-FEB-24 3RHZ 1 REMARK SEQADV REVDAT 3 10-AUG-11 3RHZ 1 JRNL VERSN REVDAT 2 22-JUN-11 3RHZ 1 JRNL REVDAT 1 01-JUN-11 3RHZ 0 JRNL AUTH F.ZHU,H.ERLANDSEN,L.DING,J.LI,Y.HUANG,M.ZHOU,X.LIANG,J.MA, JRNL AUTH 2 H.WU JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF A NEW SUBFAMILY OF JRNL TITL 2 GLYCOSYLTRANSFERASES REQUIRED FOR GLYCOSYLATION OF JRNL TITL 3 SERINE-RICH STREPTOCOCCAL ADHESINS. JRNL REF J.BIOL.CHEM. V. 286 27048 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21653318 JRNL DOI 10.1074/JBC.M110.208629 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_351) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2891 - 4.0863 1.00 5697 288 0.1631 0.1787 REMARK 3 2 4.0863 - 3.2448 1.00 5501 287 0.1653 0.2031 REMARK 3 3 3.2448 - 2.8350 1.00 5435 309 0.1884 0.2134 REMARK 3 4 2.8350 - 2.5760 1.00 5440 286 0.1878 0.2551 REMARK 3 5 2.5760 - 2.3914 1.00 5464 267 0.1887 0.2538 REMARK 3 6 2.3914 - 2.2505 1.00 5362 317 0.1830 0.2268 REMARK 3 7 2.2505 - 2.1378 1.00 5411 262 0.1812 0.2535 REMARK 3 8 2.1378 - 2.0448 1.00 5352 287 0.1910 0.2679 REMARK 3 9 2.0448 - 1.9661 1.00 5368 295 0.2052 0.2534 REMARK 3 10 1.9661 - 1.8982 0.99 5303 304 0.2413 0.2915 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 43.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.69780 REMARK 3 B22 (A**2) : -2.98140 REMARK 3 B33 (A**2) : -2.71640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5493 REMARK 3 ANGLE : 1.107 7446 REMARK 3 CHIRALITY : 0.081 819 REMARK 3 PLANARITY : 0.005 943 REMARK 3 DIHEDRAL : 15.543 2047 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:328) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0194 -13.2421 12.7025 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.1447 REMARK 3 T33: 0.1277 T12: 0.0202 REMARK 3 T13: 0.0111 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.1921 L22: 0.3309 REMARK 3 L33: 0.4526 L12: -0.0950 REMARK 3 L13: -0.1732 L23: 0.0275 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: 0.0034 S13: 0.0315 REMARK 3 S21: -0.0191 S22: -0.0320 S23: -0.1167 REMARK 3 S31: 0.0146 S32: 0.1433 S33: -0.0047 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 2:328) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4244 -36.4832 43.1991 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1169 REMARK 3 T33: 0.0360 T12: 0.0950 REMARK 3 T13: -0.0590 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.9195 L22: 0.6934 REMARK 3 L33: 0.6771 L12: -0.5450 REMARK 3 L13: 0.2877 L23: -0.0578 REMARK 3 S TENSOR REMARK 3 S11: -0.1181 S12: -0.2851 S13: -0.1306 REMARK 3 S21: 0.2163 S22: 0.1854 S23: -0.1226 REMARK 3 S31: 0.3073 S32: -0.0793 S33: -0.1202 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57262 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.898 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG3350, 10% GLYCEROL, 0.1 M REMARK 280 SUCCINIC ACID, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.12550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.12550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.58800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 96.93100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.58800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 96.93100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.12550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.58800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 96.93100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.12550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.58800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 96.93100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -77.17600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.12550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 330 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 336 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 339 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 377 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 332 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 357 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -9 REMARK 465 GLU A -8 REMARK 465 PHE A -7 REMARK 465 GLU A -6 REMARK 465 LEU A -5 REMARK 465 ARG A -4 REMARK 465 ARG A -3 REMARK 465 GLN A -2 REMARK 465 ALA A -1 REMARK 465 SER B -9 REMARK 465 GLU B -8 REMARK 465 PHE B -7 REMARK 465 GLU B -6 REMARK 465 LEU B -5 REMARK 465 ARG B -4 REMARK 465 ARG B -3 REMARK 465 GLN B -2 REMARK 465 ALA B -1 REMARK 465 PHE B 107 REMARK 465 SER B 108 REMARK 465 GLY B 109 REMARK 465 GLY B 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 329 CB CYS B 329 SG -0.304 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 2 N - CA - C ANGL. DEV. = -23.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 77 155.73 92.94 REMARK 500 HIS A 156 71.71 -154.82 REMARK 500 THR B 77 159.12 86.19 REMARK 500 HIS B 156 67.82 -158.78 REMARK 500 PRO B 203 -175.84 -49.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 7517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP B 7517 DBREF 3RHZ A 1 329 UNP B5A7L9 B5A7L9_STRPA 1 329 DBREF 3RHZ B 1 329 UNP B5A7L9 B5A7L9_STRPA 1 329 SEQADV 3RHZ SER A -9 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ GLU A -8 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ PHE A -7 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ GLU A -6 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ LEU A -5 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ ARG A -4 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ ARG A -3 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ GLN A -2 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ ALA A -1 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ CYS A 0 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ SER B -9 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ GLU B -8 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ PHE B -7 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ GLU B -6 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ LEU B -5 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ ARG B -4 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ ARG B -3 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ GLN B -2 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ ALA B -1 UNP B5A7L9 EXPRESSION TAG SEQADV 3RHZ CYS B 0 UNP B5A7L9 EXPRESSION TAG SEQRES 1 A 339 SER GLU PHE GLU LEU ARG ARG GLN ALA CYS MET ARG VAL SEQRES 2 A 339 TYR ILE THR ASN ILE ASN GLY GLN SER ILE GLN SER THR SEQRES 3 A 339 ALA GLN LEU CYS GLN ASN THR VAL THR ASP VAL ALA VAL SEQRES 4 A 339 SER LEU GLY TYR ARG GLU LEU GLY ILE TYR CYS TYR GLN SEQRES 5 A 339 ILE HIS THR ASP SER GLU SER GLU LEU SER LYS ARG LEU SEQRES 6 A 339 ASP GLY ILE VAL ALA GLY LEU ARG HIS GLY ASP VAL VAL SEQRES 7 A 339 ILE PHE GLN THR PRO THR TRP ASN THR THR GLU PHE ASP SEQRES 8 A 339 GLU LYS LEU MET ASN LYS LEU LYS LEU TYR ASP ILE LYS SEQRES 9 A 339 ILE VAL LEU PHE ILE HIS ASP VAL VAL PRO LEU MET PHE SEQRES 10 A 339 SER GLY ASN PHE TYR LEU MET ASP ARG THR ILE ALA TYR SEQRES 11 A 339 TYR ASN LYS ALA ASP VAL VAL VAL ALA PRO SER GLN LYS SEQRES 12 A 339 MET ILE ASP LYS LEU ARG ASP PHE GLY MET ASN VAL SER SEQRES 13 A 339 LYS THR VAL VAL GLN GLY MET TRP ASP HIS PRO THR GLN SEQRES 14 A 339 ALA PRO MET PHE PRO ALA GLY LEU LYS ARG GLU ILE HIS SEQRES 15 A 339 PHE PRO GLY ASN PRO GLU ARG PHE SER PHE VAL LYS GLU SEQRES 16 A 339 TRP LYS TYR ASP ILE PRO LEU LYS VAL TYR THR TRP GLN SEQRES 17 A 339 ASN VAL GLU LEU PRO GLN ASN VAL HIS LYS ILE ASN TYR SEQRES 18 A 339 ARG PRO ASP GLU GLN LEU LEU MET GLU MET SER GLN GLY SEQRES 19 A 339 GLY PHE GLY LEU VAL TRP MET ASP ASP LYS ASP LYS GLU SEQRES 20 A 339 TYR GLN SER LEU TYR CYS SER TYR LYS LEU GLY SER PHE SEQRES 21 A 339 LEU ALA ALA GLY ILE PRO VAL ILE VAL GLN GLU GLY ILE SEQRES 22 A 339 ALA ASN GLN GLU LEU ILE GLU ASN ASN GLY LEU GLY TRP SEQRES 23 A 339 ILE VAL LYS ASP VAL GLU GLU ALA ILE MET LYS VAL LYS SEQRES 24 A 339 ASN VAL ASN GLU ASP GLU TYR ILE GLU LEU VAL LYS ASN SEQRES 25 A 339 VAL ARG SER PHE ASN PRO ILE LEU ARG LYS GLY PHE PHE SEQRES 26 A 339 THR ARG ARG LEU LEU THR GLU SER VAL PHE GLN ALA ILE SEQRES 27 A 339 CYS SEQRES 1 B 339 SER GLU PHE GLU LEU ARG ARG GLN ALA CYS MET ARG VAL SEQRES 2 B 339 TYR ILE THR ASN ILE ASN GLY GLN SER ILE GLN SER THR SEQRES 3 B 339 ALA GLN LEU CYS GLN ASN THR VAL THR ASP VAL ALA VAL SEQRES 4 B 339 SER LEU GLY TYR ARG GLU LEU GLY ILE TYR CYS TYR GLN SEQRES 5 B 339 ILE HIS THR ASP SER GLU SER GLU LEU SER LYS ARG LEU SEQRES 6 B 339 ASP GLY ILE VAL ALA GLY LEU ARG HIS GLY ASP VAL VAL SEQRES 7 B 339 ILE PHE GLN THR PRO THR TRP ASN THR THR GLU PHE ASP SEQRES 8 B 339 GLU LYS LEU MET ASN LYS LEU LYS LEU TYR ASP ILE LYS SEQRES 9 B 339 ILE VAL LEU PHE ILE HIS ASP VAL VAL PRO LEU MET PHE SEQRES 10 B 339 SER GLY ASN PHE TYR LEU MET ASP ARG THR ILE ALA TYR SEQRES 11 B 339 TYR ASN LYS ALA ASP VAL VAL VAL ALA PRO SER GLN LYS SEQRES 12 B 339 MET ILE ASP LYS LEU ARG ASP PHE GLY MET ASN VAL SER SEQRES 13 B 339 LYS THR VAL VAL GLN GLY MET TRP ASP HIS PRO THR GLN SEQRES 14 B 339 ALA PRO MET PHE PRO ALA GLY LEU LYS ARG GLU ILE HIS SEQRES 15 B 339 PHE PRO GLY ASN PRO GLU ARG PHE SER PHE VAL LYS GLU SEQRES 16 B 339 TRP LYS TYR ASP ILE PRO LEU LYS VAL TYR THR TRP GLN SEQRES 17 B 339 ASN VAL GLU LEU PRO GLN ASN VAL HIS LYS ILE ASN TYR SEQRES 18 B 339 ARG PRO ASP GLU GLN LEU LEU MET GLU MET SER GLN GLY SEQRES 19 B 339 GLY PHE GLY LEU VAL TRP MET ASP ASP LYS ASP LYS GLU SEQRES 20 B 339 TYR GLN SER LEU TYR CYS SER TYR LYS LEU GLY SER PHE SEQRES 21 B 339 LEU ALA ALA GLY ILE PRO VAL ILE VAL GLN GLU GLY ILE SEQRES 22 B 339 ALA ASN GLN GLU LEU ILE GLU ASN ASN GLY LEU GLY TRP SEQRES 23 B 339 ILE VAL LYS ASP VAL GLU GLU ALA ILE MET LYS VAL LYS SEQRES 24 B 339 ASN VAL ASN GLU ASP GLU TYR ILE GLU LEU VAL LYS ASN SEQRES 25 B 339 VAL ARG SER PHE ASN PRO ILE LEU ARG LYS GLY PHE PHE SEQRES 26 B 339 THR ARG ARG LEU LEU THR GLU SER VAL PHE GLN ALA ILE SEQRES 27 B 339 CYS HET UDP A7517 25 HET UDP B7517 25 HET CL B 330 1 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM CL CHLORIDE ION FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 5 CL CL 1- FORMUL 6 HOH *349(H2 O) HELIX 1 1 SER A 15 LEU A 31 1 17 HELIX 2 2 GLN A 42 ASP A 46 5 5 HELIX 3 3 SER A 47 VAL A 59 1 13 HELIX 4 4 THR A 77 LYS A 89 1 13 HELIX 5 5 VAL A 102 PHE A 107 1 6 HELIX 6 6 SER A 108 TYR A 112 5 5 HELIX 7 7 LEU A 113 ASN A 122 1 10 HELIX 8 8 SER A 131 PHE A 141 1 11 HELIX 9 9 PHE A 180 TRP A 186 5 7 HELIX 10 10 PRO A 213 GLN A 223 1 11 HELIX 11 11 ASP A 232 LYS A 234 5 3 HELIX 12 12 ASP A 235 SER A 240 1 6 HELIX 13 13 SER A 244 GLY A 254 1 11 HELIX 14 14 GLN A 266 GLY A 273 1 8 HELIX 15 15 ASP A 280 VAL A 291 1 12 HELIX 16 16 ASN A 292 ASN A 307 1 16 HELIX 17 17 ASN A 307 LYS A 312 1 6 HELIX 18 19 SER B 15 LEU B 31 1 17 HELIX 19 20 GLN B 42 ASP B 46 5 5 HELIX 20 21 SER B 47 VAL B 59 1 13 HELIX 21 22 THR B 77 LYS B 89 1 13 HELIX 22 23 VAL B 102 MET B 106 5 5 HELIX 23 24 ASN B 110 TYR B 112 5 3 HELIX 24 25 LEU B 113 ASN B 122 1 10 HELIX 25 26 SER B 131 PHE B 141 1 11 HELIX 26 27 PHE B 180 TRP B 186 5 7 HELIX 27 28 PRO B 213 SER B 222 1 10 HELIX 28 29 ASP B 232 LYS B 234 5 3 HELIX 29 30 ASP B 235 SER B 240 1 6 HELIX 30 31 SER B 244 GLY B 254 1 11 HELIX 31 32 ASN B 265 ASN B 272 1 8 HELIX 32 33 ASP B 280 VAL B 291 1 12 HELIX 33 34 ASN B 292 ASN B 307 1 16 HELIX 34 35 ASN B 307 LYS B 312 1 6 SHEET 1 A 6 ARG A 34 TYR A 39 0 SHEET 2 A 6 VAL A 3 ASN A 9 1 N ILE A 5 O LEU A 36 SHEET 3 A 6 VAL A 67 THR A 72 1 O ILE A 69 N TYR A 4 SHEET 4 A 6 LYS A 94 ILE A 99 1 O VAL A 96 N VAL A 68 SHEET 5 A 6 VAL A 126 ALA A 129 1 O VAL A 128 N LEU A 97 SHEET 6 A 6 LYS A 147 VAL A 150 1 O VAL A 149 N ALA A 129 SHEET 1 B 6 VAL A 206 ASN A 210 0 SHEET 2 B 6 LEU A 192 THR A 196 1 N VAL A 194 O ILE A 209 SHEET 3 B 6 GLY A 166 PHE A 173 1 N ILE A 171 O LYS A 193 SHEET 4 B 6 GLY A 224 LEU A 228 1 O PHE A 226 N HIS A 172 SHEET 5 B 6 VAL A 257 GLN A 260 1 O ILE A 258 N GLY A 227 SHEET 6 B 6 GLY A 275 VAL A 278 1 O VAL A 278 N VAL A 259 SHEET 1 C 6 ARG B 34 TYR B 39 0 SHEET 2 C 6 VAL B 3 ASN B 9 1 N VAL B 3 O ARG B 34 SHEET 3 C 6 VAL B 67 THR B 72 1 O VAL B 67 N TYR B 4 SHEET 4 C 6 LYS B 94 ILE B 99 1 O VAL B 96 N PHE B 70 SHEET 5 C 6 VAL B 126 ALA B 129 1 O VAL B 128 N LEU B 97 SHEET 6 C 6 LYS B 147 VAL B 150 1 O VAL B 149 N ALA B 129 SHEET 1 D 6 VAL B 206 ILE B 209 0 SHEET 2 D 6 LEU B 192 TYR B 195 1 N VAL B 194 O ILE B 209 SHEET 3 D 6 ILE B 171 PHE B 173 1 N ILE B 171 O LYS B 193 SHEET 4 D 6 PHE B 226 VAL B 229 1 O PHE B 226 N HIS B 172 SHEET 5 D 6 VAL B 257 GLN B 260 1 O ILE B 258 N GLY B 227 SHEET 6 D 6 GLY B 275 VAL B 278 1 O VAL B 278 N VAL B 259 CISPEP 1 THR A 72 PRO A 73 0 4.83 CISPEP 2 THR B 72 PRO B 73 0 6.74 SITE 1 AC1 14 THR A 16 PRO A 174 ARG A 179 TYR A 195 SITE 2 AC1 14 TYR A 211 ARG A 212 ASP A 214 SER A 244 SITE 3 AC1 14 TYR A 245 LYS A 246 SER A 249 HOH A 460 SITE 4 AC1 14 HOH A 462 HOH A 530 SITE 1 AC2 11 THR B 16 PRO B 174 ARG B 179 TYR B 195 SITE 2 AC2 11 TYR B 211 ARG B 212 ASP B 214 SER B 244 SITE 3 AC2 11 TYR B 245 LYS B 246 SER B 249 CRYST1 77.176 193.862 96.251 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012957 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010390 0.00000