HEADER HYDROLASE 13-APR-11 3RII TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF UCHL5, A PROTEASOME- TITLE 2 ASSOCIATED HUMAN DEUBIQUITINATING ENZYME, REVEALS AN UNPRODUCTIVE TITLE 3 FORM OF THE ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 1-228); COMPND 5 SYNONYM: UCH-L5, UBIQUITIN C-TERMINAL HYDROLASE UCH37, UBIQUITIN COMPND 6 THIOESTERASE L5; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AD-019, CGI-70, UCH37, UCHL5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS ALPHA-BETA-ALPHA FOLD, THIOL HYDROALSE, CYSTEINE PROTEASE, KEYWDS 2 DEUBIQUITINATING ENZYME, UBIQUITIN HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DAS REVDAT 4 20-NOV-24 3RII 1 REMARK SEQADV LINK REVDAT 3 14-DEC-11 3RII 1 JRNL REVDAT 2 23-NOV-11 3RII 1 TITLE REVDAT 1 09-NOV-11 3RII 0 JRNL AUTH T.K.MAITI,M.PERMAUL,D.A.BOUDREAUX,C.MAHANIC,S.MAUNEY,C.DAS JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF UCHL5, A JRNL TITL 2 PROTEASOME-ASSOCIATED HUMAN DEUBIQUITINATING ENZYME, REVEALS JRNL TITL 3 AN UNPRODUCTIVE FORM OF THE ENZYME. JRNL REF FEBS J. V. 278 4917 2011 JRNL REFN ISSN 1742-464X JRNL PMID 21995438 JRNL DOI 10.1111/J.1742-4658.2011.08393.X REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 27355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0626 - 4.3092 0.99 2746 127 0.1813 0.2017 REMARK 3 2 4.3092 - 3.4209 1.00 2709 149 0.1504 0.1935 REMARK 3 3 3.4209 - 2.9886 0.99 2685 147 0.1649 0.2182 REMARK 3 4 2.9886 - 2.7154 0.98 2655 142 0.1738 0.2334 REMARK 3 5 2.7154 - 2.5208 0.96 2591 141 0.1845 0.2428 REMARK 3 6 2.5208 - 2.3722 0.93 2561 121 0.1762 0.2408 REMARK 3 7 2.3722 - 2.2534 0.94 2524 124 0.1782 0.2295 REMARK 3 8 2.2534 - 2.1553 0.94 2533 140 0.1783 0.2471 REMARK 3 9 2.1553 - 2.0724 0.94 2507 158 0.2045 0.2687 REMARK 3 10 2.0724 - 2.0008 0.91 2449 146 0.2279 0.2941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 57.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.74910 REMARK 3 B22 (A**2) : -1.09890 REMARK 3 B33 (A**2) : -0.65020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.65620 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3427 REMARK 3 ANGLE : 0.658 4635 REMARK 3 CHIRALITY : 0.046 507 REMARK 3 PLANARITY : 0.002 607 REMARK 3 DIHEDRAL : 15.953 1235 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -10.1824 -28.5587 -12.5762 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.1008 REMARK 3 T33: 0.1345 T12: 0.0061 REMARK 3 T13: 0.0177 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.5815 L22: 0.3109 REMARK 3 L33: 0.9451 L12: 0.3343 REMARK 3 L13: 0.7341 L23: 0.2557 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: 0.0023 S13: -0.0337 REMARK 3 S21: -0.0206 S22: 0.0294 S23: -0.0269 REMARK 3 S31: -0.0129 S32: 0.0479 S33: -0.0258 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27641 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : 0.12200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : 0.46200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 0.1M MGCL2, 0.1M TRIS REMARK 280 -HCL, PH 8.5, 3% TRIMETHYL AMINO OXIDE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.51700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 45.39500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 147 REMARK 465 MSE A 148 REMARK 465 PHE A 149 REMARK 465 GLU A 150 REMARK 465 PHE A 151 REMARK 465 ASP A 152 REMARK 465 THR A 153 REMARK 465 LYS A 154 REMARK 465 THR A 155 REMARK 465 SER A 156 REMARK 465 LYS A 228 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 GLY B 3 REMARK 465 ASN B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 GLN B 146 REMARK 465 GLN B 147 REMARK 465 MSE B 148 REMARK 465 PHE B 149 REMARK 465 GLU B 150 REMARK 465 PHE B 151 REMARK 465 ASP B 152 REMARK 465 LYS B 228 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ASP A 226 CG OD1 OD2 REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 ARG B 227 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 40 -6.20 -57.27 REMARK 500 GLN A 70 15.92 -144.60 REMARK 500 ASP A 71 -159.56 -98.95 REMARK 500 ASN B 42 -31.08 -163.86 REMARK 500 GLU B 62 107.83 48.74 REMARK 500 ASP B 71 -156.27 -93.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 7 TRP B 8 149.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER B 225 12.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 230 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 109 OE2 REMARK 620 2 GLU A 113 OE2 72.6 REMARK 620 3 HOH A 349 O 78.7 149.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 229 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IHR RELATED DB: PDB REMARK 900 STRUCTURE OF FULL-LENGTH PROTEIN DBREF 3RII A 1 228 UNP Q9Y5K5 UCHL5_HUMAN 1 228 DBREF 3RII B 1 228 UNP Q9Y5K5 UCHL5_HUMAN 1 228 SEQADV 3RII GLY A -4 UNP Q9Y5K5 EXPRESSION TAG SEQADV 3RII PRO A -3 UNP Q9Y5K5 EXPRESSION TAG SEQADV 3RII LEU A -2 UNP Q9Y5K5 EXPRESSION TAG SEQADV 3RII GLY A -1 UNP Q9Y5K5 EXPRESSION TAG SEQADV 3RII SER A 0 UNP Q9Y5K5 EXPRESSION TAG SEQADV 3RII SER A 88 UNP Q9Y5K5 CYS 88 ENGINEERED MUTATION SEQADV 3RII GLY B -4 UNP Q9Y5K5 EXPRESSION TAG SEQADV 3RII PRO B -3 UNP Q9Y5K5 EXPRESSION TAG SEQADV 3RII LEU B -2 UNP Q9Y5K5 EXPRESSION TAG SEQADV 3RII GLY B -1 UNP Q9Y5K5 EXPRESSION TAG SEQADV 3RII SER B 0 UNP Q9Y5K5 EXPRESSION TAG SEQADV 3RII SER B 88 UNP Q9Y5K5 CYS 88 ENGINEERED MUTATION SEQRES 1 A 233 GLY PRO LEU GLY SER MSE THR GLY ASN ALA GLY GLU TRP SEQRES 2 A 233 CYS LEU MSE GLU SER ASP PRO GLY VAL PHE THR GLU LEU SEQRES 3 A 233 ILE LYS GLY PHE GLY CYS ARG GLY ALA GLN VAL GLU GLU SEQRES 4 A 233 ILE TRP SER LEU GLU PRO GLU ASN PHE GLU LYS LEU LYS SEQRES 5 A 233 PRO VAL HIS GLY LEU ILE PHE LEU PHE LYS TRP GLN PRO SEQRES 6 A 233 GLY GLU GLU PRO ALA GLY SER VAL VAL GLN ASP SER ARG SEQRES 7 A 233 LEU ASP THR ILE PHE PHE ALA LYS GLN VAL ILE ASN ASN SEQRES 8 A 233 ALA SER ALA THR GLN ALA ILE VAL SER VAL LEU LEU ASN SEQRES 9 A 233 CYS THR HIS GLN ASP VAL HIS LEU GLY GLU THR LEU SER SEQRES 10 A 233 GLU PHE LYS GLU PHE SER GLN SER PHE ASP ALA ALA MSE SEQRES 11 A 233 LYS GLY LEU ALA LEU SER ASN SER ASP VAL ILE ARG GLN SEQRES 12 A 233 VAL HIS ASN SER PHE ALA ARG GLN GLN MSE PHE GLU PHE SEQRES 13 A 233 ASP THR LYS THR SER ALA LYS GLU GLU ASP ALA PHE HIS SEQRES 14 A 233 PHE VAL SER TYR VAL PRO VAL ASN GLY ARG LEU TYR GLU SEQRES 15 A 233 LEU ASP GLY LEU ARG GLU GLY PRO ILE ASP LEU GLY ALA SEQRES 16 A 233 CYS ASN GLN ASP ASP TRP ILE SER ALA VAL ARG PRO VAL SEQRES 17 A 233 ILE GLU LYS ARG ILE GLN LYS TYR SER GLU GLY GLU ILE SEQRES 18 A 233 ARG PHE ASN LEU MSE ALA ILE VAL SER ASP ARG LYS SEQRES 1 B 233 GLY PRO LEU GLY SER MSE THR GLY ASN ALA GLY GLU TRP SEQRES 2 B 233 CYS LEU MSE GLU SER ASP PRO GLY VAL PHE THR GLU LEU SEQRES 3 B 233 ILE LYS GLY PHE GLY CYS ARG GLY ALA GLN VAL GLU GLU SEQRES 4 B 233 ILE TRP SER LEU GLU PRO GLU ASN PHE GLU LYS LEU LYS SEQRES 5 B 233 PRO VAL HIS GLY LEU ILE PHE LEU PHE LYS TRP GLN PRO SEQRES 6 B 233 GLY GLU GLU PRO ALA GLY SER VAL VAL GLN ASP SER ARG SEQRES 7 B 233 LEU ASP THR ILE PHE PHE ALA LYS GLN VAL ILE ASN ASN SEQRES 8 B 233 ALA SER ALA THR GLN ALA ILE VAL SER VAL LEU LEU ASN SEQRES 9 B 233 CYS THR HIS GLN ASP VAL HIS LEU GLY GLU THR LEU SER SEQRES 10 B 233 GLU PHE LYS GLU PHE SER GLN SER PHE ASP ALA ALA MSE SEQRES 11 B 233 LYS GLY LEU ALA LEU SER ASN SER ASP VAL ILE ARG GLN SEQRES 12 B 233 VAL HIS ASN SER PHE ALA ARG GLN GLN MSE PHE GLU PHE SEQRES 13 B 233 ASP THR LYS THR SER ALA LYS GLU GLU ASP ALA PHE HIS SEQRES 14 B 233 PHE VAL SER TYR VAL PRO VAL ASN GLY ARG LEU TYR GLU SEQRES 15 B 233 LEU ASP GLY LEU ARG GLU GLY PRO ILE ASP LEU GLY ALA SEQRES 16 B 233 CYS ASN GLN ASP ASP TRP ILE SER ALA VAL ARG PRO VAL SEQRES 17 B 233 ILE GLU LYS ARG ILE GLN LYS TYR SER GLU GLY GLU ILE SEQRES 18 B 233 ARG PHE ASN LEU MSE ALA ILE VAL SER ASP ARG LYS MODRES 3RII MSE A 11 MET SELENOMETHIONINE MODRES 3RII MSE A 125 MET SELENOMETHIONINE MODRES 3RII MSE A 221 MET SELENOMETHIONINE MODRES 3RII MSE B 11 MET SELENOMETHIONINE MODRES 3RII MSE B 125 MET SELENOMETHIONINE MODRES 3RII MSE B 221 MET SELENOMETHIONINE HET MSE A 11 8 HET MSE A 125 8 HET MSE A 221 8 HET MSE B 11 8 HET MSE B 125 8 HET MSE B 221 8 HET EDO A 229 4 HET MG A 230 1 HET EDO B 229 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 MG MG 2+ FORMUL 6 HOH *278(H2 O) HELIX 1 1 ASP A 14 PHE A 25 1 12 HELIX 2 2 ASP A 71 THR A 76 5 6 HELIX 3 3 ILE A 84 ASN A 86 5 3 HELIX 4 4 ALA A 87 ASN A 99 1 13 HELIX 5 5 GLY A 108 GLN A 119 1 12 HELIX 6 6 ASP A 122 ASN A 132 1 11 HELIX 7 7 SER A 133 PHE A 143 1 11 HELIX 8 8 LYS A 158 PHE A 163 5 6 HELIX 9 9 TRP A 196 GLY A 214 1 19 HELIX 10 10 ASP B 14 PHE B 25 1 12 HELIX 11 11 ASP B 71 THR B 76 5 6 HELIX 12 12 ILE B 84 ASN B 86 5 3 HELIX 13 13 ALA B 87 CYS B 100 1 14 HELIX 14 14 GLY B 108 GLN B 119 1 12 HELIX 15 15 ASP B 122 ASN B 132 1 11 HELIX 16 16 SER B 133 ALA B 144 1 12 HELIX 17 17 LYS B 158 PHE B 163 5 6 HELIX 18 18 TRP B 196 GLU B 213 1 18 SHEET 1 A 7 ALA A 30 GLU A 34 0 SHEET 2 A 7 PHE A 218 SER A 225 -1 O VAL A 224 N GLN A 31 SHEET 3 A 7 VAL A 49 PHE A 56 -1 N ILE A 53 O MSE A 221 SHEET 4 A 7 HIS A 164 VAL A 171 -1 O HIS A 164 N PHE A 56 SHEET 5 A 7 ARG A 174 LEU A 178 -1 O LEU A 178 N SER A 167 SHEET 6 A 7 ILE A 186 ALA A 190 -1 O LEU A 188 N LEU A 175 SHEET 7 A 7 SER A 67 VAL A 68 -1 N SER A 67 O ASP A 187 SHEET 1 B 7 ALA B 30 GLU B 34 0 SHEET 2 B 7 PHE B 218 SER B 225 -1 O VAL B 224 N GLN B 31 SHEET 3 B 7 VAL B 49 PHE B 56 -1 N ILE B 53 O MSE B 221 SHEET 4 B 7 HIS B 164 VAL B 171 -1 O HIS B 164 N PHE B 56 SHEET 5 B 7 ARG B 174 LEU B 178 -1 O LEU B 178 N SER B 167 SHEET 6 B 7 ILE B 186 ALA B 190 -1 O LEU B 188 N LEU B 175 SHEET 7 B 7 SER B 67 VAL B 68 -1 N SER B 67 O ASP B 187 LINK C LEU A 10 N MSE A 11 1555 1555 1.33 LINK C MSE A 11 N GLU A 12 1555 1555 1.33 LINK C ALA A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N LYS A 126 1555 1555 1.33 LINK C LEU A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N ALA A 222 1555 1555 1.33 LINK C LEU B 10 N MSE B 11 1555 1555 1.33 LINK C MSE B 11 N GLU B 12 1555 1555 1.33 LINK C ALA B 124 N MSE B 125 1555 1555 1.33 LINK C MSE B 125 N LYS B 126 1555 1555 1.33 LINK C LEU B 220 N MSE B 221 1555 1555 1.33 LINK C MSE B 221 N ALA B 222 1555 1555 1.33 LINK OE2 GLU A 109 MG MG A 230 1555 1555 2.58 LINK OE2 GLU A 113 MG MG A 230 1555 1555 2.70 LINK MG MG A 230 O HOH A 349 1555 1555 2.62 CISPEP 1 LYS A 47 PRO A 48 0 1.53 CISPEP 2 LYS B 47 PRO B 48 0 -1.45 SITE 1 AC1 7 PHE A 56 LYS A 57 TRP A 58 GLN A 59 SITE 2 AC1 7 GLU A 62 TYR A 211 HOH A 288 SITE 1 AC2 4 GLU A 109 GLU A 113 HOH A 349 HOH B 351 SITE 1 AC3 6 ALA B 80 GLN B 91 ALA B 92 SER B 95 SITE 2 AC3 6 GLY B 180 HOH B 335 CRYST1 45.395 99.034 48.145 90.00 96.39 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022029 0.000000 0.002468 0.00000 SCALE2 0.000000 0.010098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020901 0.00000