data_3RIO # _entry.id 3RIO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3RIO pdb_00003rio 10.2210/pdb3rio/pdb RCSB RCSB064978 ? ? WWPDB D_1000064978 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-09 2 'Structure model' 1 1 2012-07-11 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3RIO _pdbx_database_status.recvd_initial_deposition_date 2011-04-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Himmel, S.' 1 'Grosse, C.' 2 'Wolff, S.' 3 'Becker, S.' 4 # _citation.id primary _citation.title 'Structure of the RBD-PRDI fragment of the antiterminator protein GlcT.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 68 _citation.page_first 751 _citation.page_last 756 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22750856 _citation.pdbx_database_id_DOI 10.1107/S1744309112020635 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Himmel, S.' 1 ? primary 'Grosse, C.' 2 ? primary 'Wolff, S.' 3 ? primary 'Schwiegk, C.' 4 ? primary 'Becker, S.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PtsGHI operon antiterminator' 20638.682 1 ? ? 'Co-Antiterminator domain and Phosphoenolpyruvate - phoshphotransferase system domain 1, residues 1-170' ? 2 non-polymer syn GLYCEROL 92.094 6 ? ? ? ? 3 water nat water 18.015 135 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNA-binding antitermination protein GlcT' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMTKELRIVNGSFTVKKVLNNNVLIASHHKYSEVVLIGKGIGFGKKQDDVIEDKGYDKMFILKDEKEQKQFKKLLDYV DEKLVDISNDVIYHISNRTNHSLNEHIHIALTDHIAFAIKRQQQGFDMKNPFLMETQSLYPEEYQIAKEVIDMINEKAGL CLPEGEIGFIALHIHSALTN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMTKELRIVNGSFTVKKVLNNNVLIASHHKYSEVVLIGKGIGFGKKQDDVIEDKGYDKMFILKDEKEQKQFKKLLDYV DEKLVDISNDVIYHISNRTNHSLNEHIHIALTDHIAFAIKRQQQGFDMKNPFLMETQSLYPEEYQIAKEVIDMINEKAGL CLPEGEIGFIALHIHSALTN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 THR n 1 6 LYS n 1 7 GLU n 1 8 LEU n 1 9 ARG n 1 10 ILE n 1 11 VAL n 1 12 ASN n 1 13 GLY n 1 14 SER n 1 15 PHE n 1 16 THR n 1 17 VAL n 1 18 LYS n 1 19 LYS n 1 20 VAL n 1 21 LEU n 1 22 ASN n 1 23 ASN n 1 24 ASN n 1 25 VAL n 1 26 LEU n 1 27 ILE n 1 28 ALA n 1 29 SER n 1 30 HIS n 1 31 HIS n 1 32 LYS n 1 33 TYR n 1 34 SER n 1 35 GLU n 1 36 VAL n 1 37 VAL n 1 38 LEU n 1 39 ILE n 1 40 GLY n 1 41 LYS n 1 42 GLY n 1 43 ILE n 1 44 GLY n 1 45 PHE n 1 46 GLY n 1 47 LYS n 1 48 LYS n 1 49 GLN n 1 50 ASP n 1 51 ASP n 1 52 VAL n 1 53 ILE n 1 54 GLU n 1 55 ASP n 1 56 LYS n 1 57 GLY n 1 58 TYR n 1 59 ASP n 1 60 LYS n 1 61 MET n 1 62 PHE n 1 63 ILE n 1 64 LEU n 1 65 LYS n 1 66 ASP n 1 67 GLU n 1 68 LYS n 1 69 GLU n 1 70 GLN n 1 71 LYS n 1 72 GLN n 1 73 PHE n 1 74 LYS n 1 75 LYS n 1 76 LEU n 1 77 LEU n 1 78 ASP n 1 79 TYR n 1 80 VAL n 1 81 ASP n 1 82 GLU n 1 83 LYS n 1 84 LEU n 1 85 VAL n 1 86 ASP n 1 87 ILE n 1 88 SER n 1 89 ASN n 1 90 ASP n 1 91 VAL n 1 92 ILE n 1 93 TYR n 1 94 HIS n 1 95 ILE n 1 96 SER n 1 97 ASN n 1 98 ARG n 1 99 THR n 1 100 ASN n 1 101 HIS n 1 102 SER n 1 103 LEU n 1 104 ASN n 1 105 GLU n 1 106 HIS n 1 107 ILE n 1 108 HIS n 1 109 ILE n 1 110 ALA n 1 111 LEU n 1 112 THR n 1 113 ASP n 1 114 HIS n 1 115 ILE n 1 116 ALA n 1 117 PHE n 1 118 ALA n 1 119 ILE n 1 120 LYS n 1 121 ARG n 1 122 GLN n 1 123 GLN n 1 124 GLN n 1 125 GLY n 1 126 PHE n 1 127 ASP n 1 128 MET n 1 129 LYS n 1 130 ASN n 1 131 PRO n 1 132 PHE n 1 133 LEU n 1 134 MET n 1 135 GLU n 1 136 THR n 1 137 GLN n 1 138 SER n 1 139 LEU n 1 140 TYR n 1 141 PRO n 1 142 GLU n 1 143 GLU n 1 144 TYR n 1 145 GLN n 1 146 ILE n 1 147 ALA n 1 148 LYS n 1 149 GLU n 1 150 VAL n 1 151 ILE n 1 152 ASP n 1 153 MET n 1 154 ILE n 1 155 ASN n 1 156 GLU n 1 157 LYS n 1 158 ALA n 1 159 GLY n 1 160 LEU n 1 161 CYS n 1 162 LEU n 1 163 PRO n 1 164 GLU n 1 165 GLY n 1 166 GLU n 1 167 ILE n 1 168 GLY n 1 169 PHE n 1 170 ILE n 1 171 ALA n 1 172 LEU n 1 173 HIS n 1 174 ILE n 1 175 HIS n 1 176 SER n 1 177 ALA n 1 178 LEU n 1 179 THR n 1 180 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BSU13880, glcT, ykwA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 168 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -9 ? ? ? A . n A 1 2 SER 2 -8 ? ? ? A . n A 1 3 HIS 3 -7 ? ? ? A . n A 1 4 MET 4 -6 ? ? ? A . n A 1 5 THR 5 -5 ? ? ? A . n A 1 6 LYS 6 -4 ? ? ? A . n A 1 7 GLU 7 -3 ? ? ? A . n A 1 8 LEU 8 -2 ? ? ? A . n A 1 9 ARG 9 -1 ? ? ? A . n A 1 10 ILE 10 0 ? ? ? A . n A 1 11 VAL 11 1 ? ? ? A . n A 1 12 ASN 12 2 ? ? ? A . n A 1 13 GLY 13 3 10 GLY GLY A . n A 1 14 SER 14 4 11 SER SER A . n A 1 15 PHE 15 5 12 PHE PHE A . n A 1 16 THR 16 6 13 THR THR A . n A 1 17 VAL 17 7 14 VAL VAL A . n A 1 18 LYS 18 8 15 LYS LYS A . n A 1 19 LYS 19 9 16 LYS LYS A . n A 1 20 VAL 20 10 17 VAL VAL A . n A 1 21 LEU 21 11 18 LEU LEU A . n A 1 22 ASN 22 12 19 ASN ASN A . n A 1 23 ASN 23 13 20 ASN ASN A . n A 1 24 ASN 24 14 21 ASN ASN A . n A 1 25 VAL 25 15 22 VAL VAL A . n A 1 26 LEU 26 16 23 LEU LEU A . n A 1 27 ILE 27 17 24 ILE ILE A . n A 1 28 ALA 28 18 25 ALA ALA A . n A 1 29 SER 29 19 26 SER SER A . n A 1 30 HIS 30 20 27 HIS HIS A . n A 1 31 HIS 31 21 28 HIS HIS A . n A 1 32 LYS 32 22 29 LYS LYS A . n A 1 33 TYR 33 23 30 TYR TYR A . n A 1 34 SER 34 24 31 SER SER A . n A 1 35 GLU 35 25 32 GLU GLU A . n A 1 36 VAL 36 26 33 VAL VAL A . n A 1 37 VAL 37 27 34 VAL VAL A . n A 1 38 LEU 38 28 35 LEU LEU A . n A 1 39 ILE 39 29 36 ILE ILE A . n A 1 40 GLY 40 30 37 GLY GLY A . n A 1 41 LYS 41 31 38 LYS LYS A . n A 1 42 GLY 42 32 39 GLY GLY A . n A 1 43 ILE 43 33 40 ILE ILE A . n A 1 44 GLY 44 34 41 GLY GLY A . n A 1 45 PHE 45 35 42 PHE PHE A . n A 1 46 GLY 46 36 43 GLY GLY A . n A 1 47 LYS 47 37 44 LYS LYS A . n A 1 48 LYS 48 38 45 LYS LYS A . n A 1 49 GLN 49 39 46 GLN GLN A . n A 1 50 ASP 50 40 47 ASP ASP A . n A 1 51 ASP 51 41 48 ASP ASP A . n A 1 52 VAL 52 42 49 VAL VAL A . n A 1 53 ILE 53 43 50 ILE ILE A . n A 1 54 GLU 54 44 51 GLU GLU A . n A 1 55 ASP 55 45 52 ASP ASP A . n A 1 56 LYS 56 46 53 LYS LYS A . n A 1 57 GLY 57 47 54 GLY GLY A . n A 1 58 TYR 58 48 55 TYR TYR A . n A 1 59 ASP 59 49 56 ASP ASP A . n A 1 60 LYS 60 50 57 LYS LYS A . n A 1 61 MET 61 51 58 MET MET A . n A 1 62 PHE 62 52 59 PHE PHE A . n A 1 63 ILE 63 53 60 ILE ILE A . n A 1 64 LEU 64 54 61 LEU LEU A . n A 1 65 LYS 65 55 62 LYS LYS A . n A 1 66 ASP 66 56 63 ASP ASP A . n A 1 67 GLU 67 57 64 GLU GLU A . n A 1 68 LYS 68 58 65 LYS LYS A . n A 1 69 GLU 69 59 66 GLU GLU A . n A 1 70 GLN 70 60 67 GLN GLN A . n A 1 71 LYS 71 61 68 LYS LYS A . n A 1 72 GLN 72 62 69 GLN GLN A . n A 1 73 PHE 73 63 70 PHE PHE A . n A 1 74 LYS 74 64 71 LYS LYS A . n A 1 75 LYS 75 65 72 LYS LYS A . n A 1 76 LEU 76 66 73 LEU LEU A . n A 1 77 LEU 77 67 74 LEU LEU A . n A 1 78 ASP 78 68 75 ASP ASP A . n A 1 79 TYR 79 69 76 TYR TYR A . n A 1 80 VAL 80 70 77 VAL VAL A . n A 1 81 ASP 81 71 78 ASP ASP A . n A 1 82 GLU 82 72 79 GLU GLU A . n A 1 83 LYS 83 73 80 LYS LYS A . n A 1 84 LEU 84 74 81 LEU LEU A . n A 1 85 VAL 85 75 82 VAL VAL A . n A 1 86 ASP 86 76 83 ASP ASP A . n A 1 87 ILE 87 77 84 ILE ILE A . n A 1 88 SER 88 78 85 SER SER A . n A 1 89 ASN 89 79 86 ASN ASN A . n A 1 90 ASP 90 80 87 ASP ASP A . n A 1 91 VAL 91 81 88 VAL VAL A . n A 1 92 ILE 92 82 89 ILE ILE A . n A 1 93 TYR 93 83 90 TYR TYR A . n A 1 94 HIS 94 84 91 HIS HIS A . n A 1 95 ILE 95 85 92 ILE ILE A . n A 1 96 SER 96 86 93 SER SER A . n A 1 97 ASN 97 87 94 ASN ASN A . n A 1 98 ARG 98 88 95 ARG ARG A . n A 1 99 THR 99 89 96 THR THR A . n A 1 100 ASN 100 90 97 ASN ASN A . n A 1 101 HIS 101 91 98 HIS HIS A . n A 1 102 SER 102 92 99 SER SER A . n A 1 103 LEU 103 93 100 LEU LEU A . n A 1 104 ASN 104 94 101 ASN ASN A . n A 1 105 GLU 105 95 102 GLU GLU A . n A 1 106 HIS 106 96 103 HIS HIS A . n A 1 107 ILE 107 97 104 ILE ILE A . n A 1 108 HIS 108 98 105 HIS HIS A . n A 1 109 ILE 109 99 106 ILE ILE A . n A 1 110 ALA 110 100 107 ALA ALA A . n A 1 111 LEU 111 101 108 LEU LEU A . n A 1 112 THR 112 102 109 THR THR A . n A 1 113 ASP 113 103 110 ASP ASP A . n A 1 114 HIS 114 104 111 HIS HIS A . n A 1 115 ILE 115 105 112 ILE ILE A . n A 1 116 ALA 116 106 113 ALA ALA A . n A 1 117 PHE 117 107 114 PHE PHE A . n A 1 118 ALA 118 108 115 ALA ALA A . n A 1 119 ILE 119 109 116 ILE ILE A . n A 1 120 LYS 120 110 117 LYS LYS A . n A 1 121 ARG 121 111 118 ARG ARG A . n A 1 122 GLN 122 112 119 GLN GLN A . n A 1 123 GLN 123 113 120 GLN GLN A . n A 1 124 GLN 124 114 121 GLN GLN A . n A 1 125 GLY 125 115 122 GLY GLY A . n A 1 126 PHE 126 116 123 PHE PHE A . n A 1 127 ASP 127 117 124 ASP ASP A . n A 1 128 MET 128 118 125 MET MET A . n A 1 129 LYS 129 119 126 LYS LYS A . n A 1 130 ASN 130 120 127 ASN ASN A . n A 1 131 PRO 131 121 128 PRO PRO A . n A 1 132 PHE 132 122 129 PHE PHE A . n A 1 133 LEU 133 123 130 LEU LEU A . n A 1 134 MET 134 124 131 MET MET A . n A 1 135 GLU 135 125 132 GLU GLU A . n A 1 136 THR 136 126 133 THR THR A . n A 1 137 GLN 137 127 134 GLN GLN A . n A 1 138 SER 138 128 135 SER SER A . n A 1 139 LEU 139 129 136 LEU LEU A . n A 1 140 TYR 140 130 137 TYR TYR A . n A 1 141 PRO 141 131 138 PRO PRO A . n A 1 142 GLU 142 132 139 GLU GLU A . n A 1 143 GLU 143 133 140 GLU GLU A . n A 1 144 TYR 144 134 141 TYR TYR A . n A 1 145 GLN 145 135 142 GLN GLN A . n A 1 146 ILE 146 136 143 ILE ILE A . n A 1 147 ALA 147 137 144 ALA ALA A . n A 1 148 LYS 148 138 145 LYS LYS A . n A 1 149 GLU 149 139 146 GLU GLU A . n A 1 150 VAL 150 140 147 VAL VAL A . n A 1 151 ILE 151 141 148 ILE ILE A . n A 1 152 ASP 152 142 149 ASP ASP A . n A 1 153 MET 153 143 150 MET MET A . n A 1 154 ILE 154 144 151 ILE ILE A . n A 1 155 ASN 155 145 152 ASN ASN A . n A 1 156 GLU 156 146 153 GLU GLU A . n A 1 157 LYS 157 147 154 LYS LYS A . n A 1 158 ALA 158 148 155 ALA ALA A . n A 1 159 GLY 159 149 156 GLY GLY A . n A 1 160 LEU 160 150 157 LEU LEU A . n A 1 161 CYS 161 151 158 CYS CYS A . n A 1 162 LEU 162 152 159 LEU LEU A . n A 1 163 PRO 163 153 160 PRO PRO A . n A 1 164 GLU 164 154 161 GLU GLU A . n A 1 165 GLY 165 155 162 GLY GLY A . n A 1 166 GLU 166 156 163 GLU GLU A . n A 1 167 ILE 167 157 164 ILE ILE A . n A 1 168 GLY 168 158 165 GLY GLY A . n A 1 169 PHE 169 159 166 PHE PHE A . n A 1 170 ILE 170 160 167 ILE ILE A . n A 1 171 ALA 171 161 168 ALA ALA A . n A 1 172 LEU 172 162 169 LEU LEU A . n A 1 173 HIS 173 163 170 HIS HIS A . n A 1 174 ILE 174 164 171 ILE ILE A . n A 1 175 HIS 175 165 172 HIS HIS A . n A 1 176 SER 176 166 173 SER SER A . n A 1 177 ALA 177 167 174 ALA ALA A . n A 1 178 LEU 178 168 175 LEU LEU A . n A 1 179 THR 179 169 176 THR THR A . n A 1 180 ASN 180 170 177 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 201 1 GOL GOL A . C 2 GOL 1 202 2 GOL GOL A . D 2 GOL 1 203 3 GOL GOL A . E 2 GOL 1 204 4 GOL GOL A . F 2 GOL 1 205 5 GOL GOL A . G 2 GOL 1 206 6 GOL GOL A . H 3 HOH 1 301 1 HOH HOH A . H 3 HOH 2 302 2 HOH HOH A . H 3 HOH 3 303 3 HOH HOH A . H 3 HOH 4 304 4 HOH HOH A . H 3 HOH 5 305 5 HOH HOH A . H 3 HOH 6 306 6 HOH HOH A . H 3 HOH 7 307 7 HOH HOH A . H 3 HOH 8 308 8 HOH HOH A . H 3 HOH 9 309 9 HOH HOH A . H 3 HOH 10 310 10 HOH HOH A . H 3 HOH 11 311 11 HOH HOH A . H 3 HOH 12 312 12 HOH HOH A . H 3 HOH 13 313 13 HOH HOH A . H 3 HOH 14 314 14 HOH HOH A . H 3 HOH 15 315 15 HOH HOH A . H 3 HOH 16 316 16 HOH HOH A . H 3 HOH 17 317 17 HOH HOH A . H 3 HOH 18 318 18 HOH HOH A . H 3 HOH 19 319 19 HOH HOH A . H 3 HOH 20 320 20 HOH HOH A . H 3 HOH 21 321 21 HOH HOH A . H 3 HOH 22 322 22 HOH HOH A . H 3 HOH 23 323 23 HOH HOH A . H 3 HOH 24 324 24 HOH HOH A . H 3 HOH 25 325 25 HOH HOH A . H 3 HOH 26 326 26 HOH HOH A . H 3 HOH 27 327 27 HOH HOH A . H 3 HOH 28 328 28 HOH HOH A . H 3 HOH 29 329 29 HOH HOH A . H 3 HOH 30 330 30 HOH HOH A . H 3 HOH 31 331 31 HOH HOH A . H 3 HOH 32 332 32 HOH HOH A . H 3 HOH 33 333 33 HOH HOH A . H 3 HOH 34 334 34 HOH HOH A . H 3 HOH 35 335 35 HOH HOH A . H 3 HOH 36 336 36 HOH HOH A . H 3 HOH 37 337 37 HOH HOH A . H 3 HOH 38 338 38 HOH HOH A . H 3 HOH 39 339 39 HOH HOH A . H 3 HOH 40 340 40 HOH HOH A . H 3 HOH 41 341 41 HOH HOH A . H 3 HOH 42 342 42 HOH HOH A . H 3 HOH 43 343 43 HOH HOH A . H 3 HOH 44 344 44 HOH HOH A . H 3 HOH 45 345 45 HOH HOH A . H 3 HOH 46 346 46 HOH HOH A . H 3 HOH 47 347 47 HOH HOH A . H 3 HOH 48 348 48 HOH HOH A . H 3 HOH 49 349 49 HOH HOH A . H 3 HOH 50 350 50 HOH HOH A . H 3 HOH 51 351 51 HOH HOH A . H 3 HOH 52 352 52 HOH HOH A . H 3 HOH 53 353 53 HOH HOH A . H 3 HOH 54 354 54 HOH HOH A . H 3 HOH 55 355 55 HOH HOH A . H 3 HOH 56 356 56 HOH HOH A . H 3 HOH 57 357 57 HOH HOH A . H 3 HOH 58 358 58 HOH HOH A . H 3 HOH 59 359 59 HOH HOH A . H 3 HOH 60 360 60 HOH HOH A . H 3 HOH 61 361 61 HOH HOH A . H 3 HOH 62 362 62 HOH HOH A . H 3 HOH 63 363 63 HOH HOH A . H 3 HOH 64 364 64 HOH HOH A . H 3 HOH 65 365 65 HOH HOH A . H 3 HOH 66 366 66 HOH HOH A . H 3 HOH 67 367 67 HOH HOH A . H 3 HOH 68 368 68 HOH HOH A . H 3 HOH 69 369 69 HOH HOH A . H 3 HOH 70 370 70 HOH HOH A . H 3 HOH 71 371 71 HOH HOH A . H 3 HOH 72 372 72 HOH HOH A . H 3 HOH 73 373 73 HOH HOH A . H 3 HOH 74 374 74 HOH HOH A . H 3 HOH 75 375 75 HOH HOH A . H 3 HOH 76 376 76 HOH HOH A . H 3 HOH 77 377 77 HOH HOH A . H 3 HOH 78 378 78 HOH HOH A . H 3 HOH 79 379 79 HOH HOH A . H 3 HOH 80 380 80 HOH HOH A . H 3 HOH 81 381 81 HOH HOH A . H 3 HOH 82 382 82 HOH HOH A . H 3 HOH 83 383 83 HOH HOH A . H 3 HOH 84 384 84 HOH HOH A . H 3 HOH 85 385 85 HOH HOH A . H 3 HOH 86 386 86 HOH HOH A . H 3 HOH 87 387 87 HOH HOH A . H 3 HOH 88 388 88 HOH HOH A . H 3 HOH 89 389 89 HOH HOH A . H 3 HOH 90 390 90 HOH HOH A . H 3 HOH 91 391 91 HOH HOH A . H 3 HOH 92 392 92 HOH HOH A . H 3 HOH 93 393 93 HOH HOH A . H 3 HOH 94 394 94 HOH HOH A . H 3 HOH 95 395 95 HOH HOH A . H 3 HOH 96 396 96 HOH HOH A . H 3 HOH 97 397 97 HOH HOH A . H 3 HOH 98 398 98 HOH HOH A . H 3 HOH 99 399 99 HOH HOH A . H 3 HOH 100 400 100 HOH HOH A . H 3 HOH 101 401 101 HOH HOH A . H 3 HOH 102 402 102 HOH HOH A . H 3 HOH 103 403 103 HOH HOH A . H 3 HOH 104 404 104 HOH HOH A . H 3 HOH 105 405 105 HOH HOH A . H 3 HOH 106 406 106 HOH HOH A . H 3 HOH 107 407 107 HOH HOH A . H 3 HOH 108 408 108 HOH HOH A . H 3 HOH 109 409 109 HOH HOH A . H 3 HOH 110 410 110 HOH HOH A . H 3 HOH 111 411 111 HOH HOH A . H 3 HOH 112 412 112 HOH HOH A . H 3 HOH 113 413 113 HOH HOH A . H 3 HOH 114 414 114 HOH HOH A . H 3 HOH 115 415 115 HOH HOH A . H 3 HOH 116 416 116 HOH HOH A . H 3 HOH 117 417 117 HOH HOH A . H 3 HOH 118 418 118 HOH HOH A . H 3 HOH 119 419 119 HOH HOH A . H 3 HOH 120 420 120 HOH HOH A . H 3 HOH 121 421 121 HOH HOH A . H 3 HOH 122 422 122 HOH HOH A . H 3 HOH 123 423 123 HOH HOH A . H 3 HOH 124 424 124 HOH HOH A . H 3 HOH 125 425 125 HOH HOH A . H 3 HOH 126 426 126 HOH HOH A . H 3 HOH 127 427 127 HOH HOH A . H 3 HOH 128 428 128 HOH HOH A . H 3 HOH 129 429 129 HOH HOH A . H 3 HOH 130 430 130 HOH HOH A . H 3 HOH 131 431 131 HOH HOH A . H 3 HOH 132 432 132 HOH HOH A . H 3 HOH 133 433 133 HOH HOH A . H 3 HOH 134 434 134 HOH HOH A . H 3 HOH 135 435 135 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 4 ? OG ? A SER 14 OG 2 1 Y 1 A LYS 9 ? NZ ? A LYS 19 NZ 3 1 Y 1 A LYS 22 ? CG ? A LYS 32 CG 4 1 Y 1 A LYS 22 ? CD ? A LYS 32 CD 5 1 Y 1 A LYS 22 ? CE ? A LYS 32 CE 6 1 Y 1 A LYS 22 ? NZ ? A LYS 32 NZ 7 1 Y 1 A LYS 37 ? NZ ? A LYS 47 NZ 8 1 Y 1 A LYS 38 ? CD ? A LYS 48 CD 9 1 Y 1 A LYS 38 ? CE ? A LYS 48 CE 10 1 Y 1 A LYS 38 ? NZ ? A LYS 48 NZ 11 1 Y 1 A GLU 44 ? CG ? A GLU 54 CG 12 1 Y 1 A GLU 44 ? CD ? A GLU 54 CD 13 1 Y 1 A GLU 44 ? OE1 ? A GLU 54 OE1 14 1 Y 1 A GLU 44 ? OE2 ? A GLU 54 OE2 15 1 Y 1 A LYS 58 ? CG ? A LYS 68 CG 16 1 Y 1 A LYS 58 ? CD ? A LYS 68 CD 17 1 Y 1 A LYS 58 ? CE ? A LYS 68 CE 18 1 Y 1 A LYS 58 ? NZ ? A LYS 68 NZ 19 1 Y 1 A LYS 61 ? CE ? A LYS 71 CE 20 1 Y 1 A LYS 61 ? NZ ? A LYS 71 NZ 21 1 Y 1 A LYS 65 ? CD ? A LYS 75 CD 22 1 Y 1 A LYS 65 ? CE ? A LYS 75 CE 23 1 Y 1 A LYS 65 ? NZ ? A LYS 75 NZ 24 1 Y 1 A LYS 73 ? CD ? A LYS 83 CD 25 1 Y 1 A LYS 73 ? CE ? A LYS 83 CE 26 1 Y 1 A LYS 73 ? NZ ? A LYS 83 NZ 27 1 Y 1 A SER 92 ? OG ? A SER 102 OG 28 1 Y 1 A GLU 132 ? CG ? A GLU 142 CG 29 1 Y 1 A GLU 132 ? CD ? A GLU 142 CD 30 1 Y 1 A GLU 132 ? OE1 ? A GLU 142 OE1 31 1 Y 1 A GLU 132 ? OE2 ? A GLU 142 OE2 32 1 Y 1 A LYS 138 ? CE ? A LYS 148 CE 33 1 Y 1 A LYS 138 ? NZ ? A LYS 148 NZ 34 1 Y 1 A GLU 146 ? CD ? A GLU 156 CD 35 1 Y 1 A GLU 146 ? OE1 ? A GLU 156 OE1 36 1 Y 1 A GLU 146 ? OE2 ? A GLU 156 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXD phasing . ? 1 BUSTER refinement 2.8.0 ? 2 XDS 'data reduction' . ? 3 SADABS 'data scaling' . ? 4 # _cell.entry_id 3RIO _cell.length_a 35.755 _cell.length_b 47.597 _cell.length_c 126.779 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3RIO _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3RIO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_percent_sol 53.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'Na formate, PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 PIXEL 'DECTRIS PILATUS 6M' 2010-11-27 'Si(111) monochromator' 2 PIXEL 'DECTRIS PILATUS 6M' 2010-11-27 'Si(111) monochromator' # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Si(111) monochromator' 'SINGLE WAVELENGTH' x-ray 2 1 M 'Si(111) monochromator' MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.999 1.0 2 0.9792 1.0 3 0.9794 1.0 4 0.9715 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'SLS BEAMLINE X10SA' SLS X10SA ? 0.999 2 SYNCHROTRON 'SLS BEAMLINE X10SA' SLS X10SA ? '0.9792, 0.9794, 0.9715' # _reflns.entry_id 3RIO _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 63.39 _reflns.d_resolution_high 1.99 _reflns.number_obs 15190 _reflns.number_all 15190 _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 24.89 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 1.99 _reflns_shell.d_res_low 2.1 _reflns_shell.percent_possible_all 97.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.15 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 3RIO _refine.ls_number_reflns_obs 15190 _refine.ls_number_reflns_all 15190 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 63.39 _refine.ls_d_res_high 1.99 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2118 _refine.ls_R_factor_all 0.2118 _refine.ls_R_factor_R_work 0.2100 _refine.ls_R_factor_R_free 0.2465 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 760 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.8981 _refine.correlation_coeff_Fo_to_Fc_free 0.8797 _refine.B_iso_mean 29.67 _refine.aniso_B[1][1] 2.3241 _refine.aniso_B[2][2] -15.7350 _refine.aniso_B[3][3] 13.4109 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1,2,3,4 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3RIO _refine_analyze.Luzzati_coordinate_error_obs 0.259 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1319 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 1490 _refine_hist.d_res_high 1.99 _refine_hist.d_res_low 63.39 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_bond_d 0.010 ? 2.00 1381 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1.12 ? 2.00 1857 HARMONIC 'X-RAY DIFFRACTION' t_dihedral_angle_d ? ? 2.00 486 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes ? ? 2.00 40 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes ? ? 5.00 194 HARMONIC 'X-RAY DIFFRACTION' t_it ? ? 20.00 1381 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion 2.76 ? ? ? ? 'X-RAY DIFFRACTION' t_other_torsion 17.51 ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion ? ? 5.00 182 SEMIHARMONIC 'X-RAY DIFFRACTION' t_ideal_dist_contact ? ? 4.00 1743 SEMIHARMONIC 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 1.99 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2414 _refine_ls_shell.R_factor_R_work 0.2100 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2465 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.48 _refine_ls_shell.number_reflns_R_free 140 _refine_ls_shell.number_reflns_all 2554 _refine_ls_shell.R_factor_all 0.2244 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3RIO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3RIO _struct.title 'Crystal structure of GlcT CAT-PRDI' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3RIO _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'twisted beta sheet, four helix bundle, transcriptional antitermination, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLCT_BACSU _struct_ref.pdbx_db_accession O31691 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTKELRIVNGSFTVKKVLNNNVLIASHHKYSEVVLIGKGIGFGKKQDDVIEDKGYDKMFILKDEKEQKQFKKLLDYVDEK LVDISNDVIYHISNRTNHSLNEHIHIALTDHIAFAIKRQQQGFDMKNPFLMETQSLYPEEYQIAKEVIDMINEKAGICLP EGEIGFIALHIHSALTN ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3RIO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 12 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 180 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O31691 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 170 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 170 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3RIO GLY A 1 ? UNP O31691 ? ? 'expression tag' -9 1 1 3RIO SER A 2 ? UNP O31691 ? ? 'expression tag' -8 2 1 3RIO HIS A 3 ? UNP O31691 ? ? 'expression tag' -7 3 1 3RIO MET A 4 ? UNP O31691 ? ? 'expression tag' -6 4 1 3RIO THR A 5 ? UNP O31691 ? ? 'expression tag' -5 5 1 3RIO LYS A 6 ? UNP O31691 ? ? 'expression tag' -4 6 1 3RIO GLU A 7 ? UNP O31691 ? ? 'expression tag' -3 7 1 3RIO LEU A 8 ? UNP O31691 ? ? 'expression tag' -2 8 1 3RIO ARG A 9 ? UNP O31691 ? ? 'expression tag' -1 9 1 3RIO ILE A 10 ? UNP O31691 ? ? 'expression tag' 0 10 1 3RIO VAL A 11 ? UNP O31691 ? ? 'expression tag' 1 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 31 ? TYR A 33 ? HIS A 21 TYR A 23 5 ? 3 HELX_P HELX_P2 2 ASP A 66 ? LEU A 77 ? ASP A 56 LEU A 67 1 ? 12 HELX_P HELX_P3 3 ASP A 81 ? ASN A 100 ? ASP A 71 ASN A 90 1 ? 20 HELX_P HELX_P4 4 HIS A 106 ? GLN A 124 ? HIS A 96 GLN A 114 1 ? 19 HELX_P HELX_P5 5 PHE A 132 ? TYR A 140 ? PHE A 122 TYR A 130 1 ? 9 HELX_P HELX_P6 6 TYR A 140 ? GLY A 159 ? TYR A 130 GLY A 149 1 ? 20 HELX_P HELX_P7 7 GLY A 165 ? ASN A 180 ? GLY A 155 ASN A 170 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 52 ? GLU A 54 ? VAL A 42 GLU A 44 A 2 SER A 14 ? ASN A 22 ? SER A 4 ASN A 12 A 3 VAL A 25 ? SER A 29 ? VAL A 15 SER A 19 A 4 GLU A 35 ? ILE A 39 ? GLU A 25 ILE A 29 A 5 PHE A 62 ? LEU A 64 ? PHE A 52 LEU A 54 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 53 ? O ILE A 43 N PHE A 15 ? N PHE A 5 A 2 3 N LYS A 18 ? N LYS A 8 O ILE A 27 ? O ILE A 17 A 3 4 N LEU A 26 ? N LEU A 16 O LEU A 38 ? O LEU A 28 A 4 5 N VAL A 37 ? N VAL A 27 O LEU A 64 ? O LEU A 54 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 201 ? 9 'BINDING SITE FOR RESIDUE GOL A 201' AC2 Software A GOL 202 ? 7 'BINDING SITE FOR RESIDUE GOL A 202' AC3 Software A GOL 203 ? 7 'BINDING SITE FOR RESIDUE GOL A 203' AC4 Software A GOL 204 ? 8 'BINDING SITE FOR RESIDUE GOL A 204' AC5 Software A GOL 205 ? 6 'BINDING SITE FOR RESIDUE GOL A 205' AC6 Software A GOL 206 ? 5 'BINDING SITE FOR RESIDUE GOL A 206' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ARG A 121 ? ARG A 111 . ? 4_455 ? 2 AC1 9 GLN A 124 ? GLN A 114 . ? 4_455 ? 3 AC1 9 PHE A 126 ? PHE A 116 . ? 4_455 ? 4 AC1 9 ASN A 130 ? ASN A 120 . ? 1_555 ? 5 AC1 9 PHE A 132 ? PHE A 122 . ? 1_555 ? 6 AC1 9 THR A 136 ? THR A 126 . ? 1_555 ? 7 AC1 9 GLY A 168 ? GLY A 158 . ? 1_555 ? 8 AC1 9 LEU A 172 ? LEU A 162 . ? 1_555 ? 9 AC1 9 HOH H . ? HOH A 422 . ? 1_555 ? 10 AC2 7 HIS A 106 ? HIS A 96 . ? 1_555 ? 11 AC2 7 ALA A 110 ? ALA A 100 . ? 1_555 ? 12 AC2 7 PHE A 126 ? PHE A 116 . ? 4_455 ? 13 AC2 7 ASP A 127 ? ASP A 117 . ? 4_455 ? 14 AC2 7 SER A 176 ? SER A 166 . ? 1_555 ? 15 AC2 7 GOL D . ? GOL A 203 . ? 1_555 ? 16 AC2 7 HOH H . ? HOH A 408 . ? 1_555 ? 17 AC3 7 HIS A 114 ? HIS A 104 . ? 1_555 ? 18 AC3 7 GLN A 124 ? GLN A 114 . ? 4_455 ? 19 AC3 7 GLU A 135 ? GLU A 125 . ? 4_555 ? 20 AC3 7 SER A 138 ? SER A 128 . ? 4_555 ? 21 AC3 7 HIS A 173 ? HIS A 163 . ? 1_555 ? 22 AC3 7 GOL C . ? GOL A 202 . ? 1_555 ? 23 AC3 7 HOH H . ? HOH A 318 . ? 1_555 ? 24 AC4 8 LYS A 120 ? LYS A 110 . ? 1_455 ? 25 AC4 8 GLN A 123 ? GLN A 113 . ? 1_455 ? 26 AC4 8 GLN A 124 ? GLN A 114 . ? 1_455 ? 27 AC4 8 LEU A 139 ? LEU A 129 . ? 1_555 ? 28 AC4 8 TYR A 140 ? TYR A 130 . ? 1_555 ? 29 AC4 8 PRO A 141 ? PRO A 131 . ? 1_555 ? 30 AC4 8 GLU A 142 ? GLU A 132 . ? 1_555 ? 31 AC4 8 GLU A 143 ? GLU A 133 . ? 1_555 ? 32 AC5 6 TYR A 79 ? TYR A 69 . ? 4_455 ? 33 AC5 6 PRO A 131 ? PRO A 121 . ? 1_555 ? 34 AC5 6 LEU A 133 ? LEU A 123 . ? 1_555 ? 35 AC5 6 MET A 134 ? MET A 124 . ? 1_555 ? 36 AC5 6 HOH H . ? HOH A 314 . ? 1_555 ? 37 AC5 6 HOH H . ? HOH A 352 . ? 1_555 ? 38 AC6 5 GLU A 35 ? GLU A 25 . ? 1_555 ? 39 AC6 5 LYS A 56 ? LYS A 46 . ? 3_645 ? 40 AC6 5 GLN A 70 ? GLN A 60 . ? 1_555 ? 41 AC6 5 LYS A 74 ? LYS A 64 . ? 1_555 ? 42 AC6 5 HOH H . ? HOH A 342 . ? 3_645 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 20 ? ? -138.88 -144.60 2 1 ASP A 40 ? ? 85.29 -5.77 3 1 TYR A 69 ? ? -141.45 -30.38 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -9 ? A GLY 1 2 1 Y 1 A SER -8 ? A SER 2 3 1 Y 1 A HIS -7 ? A HIS 3 4 1 Y 1 A MET -6 ? A MET 4 5 1 Y 1 A THR -5 ? A THR 5 6 1 Y 1 A LYS -4 ? A LYS 6 7 1 Y 1 A GLU -3 ? A GLU 7 8 1 Y 1 A LEU -2 ? A LEU 8 9 1 Y 1 A ARG -1 ? A ARG 9 10 1 Y 1 A ILE 0 ? A ILE 10 11 1 Y 1 A VAL 1 ? A VAL 11 12 1 Y 1 A ASN 2 ? A ASN 12 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TYR N N N N 335 TYR CA C N S 336 TYR C C N N 337 TYR O O N N 338 TYR CB C N N 339 TYR CG C Y N 340 TYR CD1 C Y N 341 TYR CD2 C Y N 342 TYR CE1 C Y N 343 TYR CE2 C Y N 344 TYR CZ C Y N 345 TYR OH O N N 346 TYR OXT O N N 347 TYR H H N N 348 TYR H2 H N N 349 TYR HA H N N 350 TYR HB2 H N N 351 TYR HB3 H N N 352 TYR HD1 H N N 353 TYR HD2 H N N 354 TYR HE1 H N N 355 TYR HE2 H N N 356 TYR HH H N N 357 TYR HXT H N N 358 VAL N N N N 359 VAL CA C N S 360 VAL C C N N 361 VAL O O N N 362 VAL CB C N N 363 VAL CG1 C N N 364 VAL CG2 C N N 365 VAL OXT O N N 366 VAL H H N N 367 VAL H2 H N N 368 VAL HA H N N 369 VAL HB H N N 370 VAL HG11 H N N 371 VAL HG12 H N N 372 VAL HG13 H N N 373 VAL HG21 H N N 374 VAL HG22 H N N 375 VAL HG23 H N N 376 VAL HXT H N N 377 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _atom_sites.entry_id 3RIO _atom_sites.fract_transf_matrix[1][1] 0.027968 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021010 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007888 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_