HEADER VIRAL PROTEIN/IMMUNE SYSTEM 15-APR-11 3RJQ TITLE CRYSTAL STRUCTURE OF ANTI-HIV LLAMA VHH ANTIBODY A12 IN COMPLEX WITH TITLE 2 C186 GP120 CAVEAT 3RJQ NAG A 734 HAS WRONG CHIRALITY AT ATOM C1 NAG A 897 HAS WRONG CAVEAT 2 3RJQ CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C186 GP120; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LLAMA VHH A12; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 3 ORGANISM_TAXID: 11706; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 6 ORGANISM_TAXID: 9844 KEYWDS IG VH DOMAIN, ANTI-HIV, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.CHEN,J.S.MCLELLAN,Y.D.KWON,S.SCHMIDT,X.WU,T.ZHOU,Y.YANG,B.ZHANG, AUTHOR 2 A.FORSMAN,R.A.WEISS,T.VERRIPS,J.MASCOLA,P.D.KWONG REVDAT 5 30-OCT-24 3RJQ 1 REMARK HETSYN REVDAT 4 29-JUL-20 3RJQ 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 12-SEP-12 3RJQ 1 REMARK REVDAT 2 13-JUN-12 3RJQ 1 JRNL REVDAT 1 02-MAY-12 3RJQ 0 JRNL AUTH L.CHEN,J.S.MCLELLAN,Y.D.KWON,S.SCHMIDT,X.WU,T.ZHOU,Y.YANG, JRNL AUTH 2 B.ZHANG,A.FORSMAN,R.A.WEISS,T.VERRIPS,J.MASCOLA,P.D.KWONG JRNL TITL CRYSTAL STRUCTURE OF ANTI-HIV A12 VHH OF LLAMA ANTIBODY IN JRNL TITL 2 COMPLEX WITH C1086 GP120 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 69.0 REMARK 3 NUMBER OF REFLECTIONS : 13402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.4735 - 4.4394 0.98 3863 191 0.2203 0.2735 REMARK 3 2 4.4394 - 3.5275 0.99 3675 179 0.2504 0.2788 REMARK 3 3 3.5275 - 3.0827 0.91 3335 180 0.3115 0.3605 REMARK 3 4 3.0827 - 2.8014 0.42 1490 87 0.3476 0.3464 REMARK 3 5 2.8014 - 2.6010 0.11 380 22 0.3566 0.5101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.26 REMARK 3 B_SOL : 68.27 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -33.18350 REMARK 3 B22 (A**2) : -33.18350 REMARK 3 B33 (A**2) : -15.70710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3470 REMARK 3 ANGLE : 0.883 4698 REMARK 3 CHIRALITY : 0.055 529 REMARK 3 PLANARITY : 0.003 593 REMARK 3 DIHEDRAL : 15.461 1264 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 45:256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0248 23.5660 -36.4179 REMARK 3 T TENSOR REMARK 3 T11: 0.4195 T22: 1.4789 REMARK 3 T33: 0.2315 T12: 0.4383 REMARK 3 T13: 0.1650 T23: 0.3519 REMARK 3 L TENSOR REMARK 3 L11: 0.8374 L22: 0.5895 REMARK 3 L33: 4.0228 L12: -0.6084 REMARK 3 L13: -1.0408 L23: 0.6533 REMARK 3 S TENSOR REMARK 3 S11: 0.5977 S12: 0.6023 S13: -0.0512 REMARK 3 S21: -0.4281 S22: -0.0659 S23: 0.1225 REMARK 3 S31: -0.5574 S32: -2.2135 S33: -0.1954 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 257:472 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3920 16.1432 -20.0504 REMARK 3 T TENSOR REMARK 3 T11: 0.1861 T22: 2.3419 REMARK 3 T33: 0.4104 T12: 0.0876 REMARK 3 T13: 0.1697 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 0.5265 L22: 0.1602 REMARK 3 L33: 2.1062 L12: 0.0462 REMARK 3 L13: -0.7987 L23: -0.3620 REMARK 3 S TENSOR REMARK 3 S11: 0.3256 S12: 0.6774 S13: -0.0794 REMARK 3 S21: 0.0265 S22: -0.1858 S23: 0.4323 REMARK 3 S31: -0.1330 S32: -2.6376 S33: -0.0324 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1712 7.2438 -12.1085 REMARK 3 T TENSOR REMARK 3 T11: 0.0912 T22: 0.5295 REMARK 3 T33: -0.0686 T12: -0.7114 REMARK 3 T13: -0.0553 T23: -0.1010 REMARK 3 L TENSOR REMARK 3 L11: 0.2489 L22: 0.2396 REMARK 3 L33: 0.2989 L12: 0.0316 REMARK 3 L13: -0.0961 L23: -0.0059 REMARK 3 S TENSOR REMARK 3 S11: 0.2684 S12: 0.1807 S13: 0.2235 REMARK 3 S21: 0.2101 S22: 0.2506 S23: 0.0259 REMARK 3 S31: 0.4038 S32: -0.4011 S33: 0.7572 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RJQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13406 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.601 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 68.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM OF KH2PO4, 24.2% PEG 8000, PH REMARK 280 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 133.46000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.30000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 200.19000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.30000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.73000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.30000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.30000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 200.19000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.30000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.30000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.73000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 133.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 20 REMARK 465 ILE A 21 REMARK 465 ALA A 22 REMARK 465 THR A 23 REMARK 465 MET A 24 REMARK 465 TYR A 25 REMARK 465 SER A 26 REMARK 465 MET A 27 REMARK 465 GLN A 28 REMARK 465 LEU A 29 REMARK 465 ALA A 30 REMARK 465 SER A 31 REMARK 465 CYS A 32 REMARK 465 VAL A 33 REMARK 465 THR A 34 REMARK 465 LEU A 35 REMARK 465 THR A 36 REMARK 465 LEU A 37 REMARK 465 VAL A 38 REMARK 465 LEU A 39 REMARK 465 LEU A 40 REMARK 465 VAL A 41 REMARK 465 ASN A 42 REMARK 465 SER A 43 REMARK 465 VAL A 44 REMARK 465 PRO A 191 REMARK 465 CYS A 192 REMARK 465 VAL A 193 REMARK 465 LYS A 194 REMARK 465 LEU A 195 REMARK 465 THR A 196 REMARK 465 GLY A 197 REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 465 ALA A 200 REMARK 465 ILE A 201 REMARK 465 THR A 202 REMARK 465 GLN A 203 REMARK 465 ALA A 204 REMARK 465 CYS A 205 REMARK 465 PRO A 206 REMARK 465 LYS A 207 REMARK 465 PRO A 315 REMARK 465 ASN A 316 REMARK 465 ASN A 317 REMARK 465 GLY A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 GLY A 321 REMARK 465 SER A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 324 REMARK 465 ASN A 325 REMARK 465 ILE A 326 REMARK 465 ARG A 327 REMARK 465 GLN A 328 REMARK 465 ARG A 408 REMARK 465 SER A 409 REMARK 465 SER A 410 REMARK 465 ASN A 411 REMARK 465 GLY A 412 REMARK 465 ILE A 423 REMARK 465 ILE A 424 REMARK 465 ASN A 425 REMARK 465 MET A 426 REMARK 465 TRP A 427 REMARK 465 GLN A 428 REMARK 465 GLU A 429 REMARK 465 VAL A 430 REMARK 465 GLY A 431 REMARK 465 ARG A 432 REMARK 465 ALA A 433 REMARK 465 ILE A 434 REMARK 465 TYR A 435 REMARK 465 ALA A 436 REMARK 465 PRO A 437 REMARK 465 PRO A 438 REMARK 465 ILE A 439 REMARK 465 GLU A 440 REMARK 465 GLY A 441 REMARK 465 GLU A 442 REMARK 465 ILE A 443 REMARK 465 GLY A 458A REMARK 465 GLN A 458B REMARK 465 SER A 458C REMARK 465 ASN A 458D REMARK 465 GLU A 458E REMARK 465 THR A 458F REMARK 465 ASN A 458G REMARK 465 LYS A 492 REMARK 465 GLU B 114 REMARK 465 GLN B 115 REMARK 465 LYS B 116 REMARK 465 LEU B 117 REMARK 465 ILE B 118 REMARK 465 SER B 119 REMARK 465 GLU B 120 REMARK 465 GLU B 121 REMARK 465 ASP B 122 REMARK 465 LEU B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 298 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 83 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 392 C1 NAG A 892 1.17 REMARK 500 CG ASN A 241 C1 NAG A 741 1.93 REMARK 500 ND2 ASN A 289 C2 NAG A 789 1.94 REMARK 500 OD1 ASN A 241 C1 NAG A 741 1.97 REMARK 500 OD1 ASP A 389 CG2 THR A 403 2.06 REMARK 500 OD1 ASN A 241 C2 NAG A 741 2.07 REMARK 500 ND2 ASN A 234 C2 NAG A 734 2.17 REMARK 500 OD1 ASN A 386 OG SER A 388 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 82 61.77 139.96 REMARK 500 ASN A 88 -4.31 65.51 REMARK 500 ASN A 94 94.16 -164.03 REMARK 500 PHE A 210 110.54 -164.60 REMARK 500 ASP A 211 115.80 -164.45 REMARK 500 PRO A 212 156.40 -46.94 REMARK 500 ASN A 230 103.02 -58.04 REMARK 500 GLN A 258 -46.45 80.02 REMARK 500 GLU A 268 -118.02 72.17 REMARK 500 SER A 274 146.85 -170.68 REMARK 500 PRO A 354 -117.45 -74.90 REMARK 500 PHE A 376 167.96 177.67 REMARK 500 ARG A 379 15.07 53.95 REMARK 500 PHE A 391 59.98 -93.85 REMARK 500 ARG A 396 -131.07 -74.39 REMARK 500 SER B 31 38.96 -86.72 REMARK 500 VAL B 48 -54.30 -132.44 REMARK 500 ASP B 100I 85.11 47.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 892 DBREF 3RJQ A 20 492 PDB 3RJQ 3RJQ 20 492 DBREF 3RJQ B 1 129 PDB 3RJQ 3RJQ 1 129 SEQRES 1 A 382 ASP ILE ALA THR MET TYR SER MET GLN LEU ALA SER CYS SEQRES 2 A 382 VAL THR LEU THR LEU VAL LEU LEU VAL ASN SER VAL TRP SEQRES 3 A 382 LYS GLU ALA LYS THR THR LEU PHE CYS ALA SER ASP ALA SEQRES 4 A 382 LYS ALA TYR GLU LYS GLU VAL HIS ASN VAL TRP ALA THR SEQRES 5 A 382 HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN GLU MET SEQRES 6 A 382 VAL LEU ALA ASN VAL THR GLU ASN PHE ASN MET TRP LYS SEQRES 7 A 382 ASN ASP MET VAL GLU GLN MET HIS GLU ASP ILE ILE SER SEQRES 8 A 382 LEU TRP ASP GLU SER LEU LYS PRO CYS VAL LYS LEU THR SEQRES 9 A 382 GLY GLY SER ALA ILE THR GLN ALA CYS PRO LYS VAL SER SEQRES 10 A 382 PHE ASP PRO ILE PRO LEU HIS TYR CYS ALA PRO ALA GLY SEQRES 11 A 382 PHE ALA ILE LEU LYS CYS ASN ASN LYS THR PHE ASN GLY SEQRES 12 A 382 THR GLY PRO CYS ARG ASN VAL SER THR VAL GLN CYS THR SEQRES 13 A 382 HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU LEU LEU SEQRES 14 A 382 ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE ARG SER SEQRES 15 A 382 GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE VAL HIS SEQRES 16 A 382 LEU ASN GLU SER VAL ASN ILE VAL CYS THR ARG PRO ASN SEQRES 17 A 382 ASN GLY GLY SER GLY SER GLY GLY ASN ILE ARG GLN ALA SEQRES 18 A 382 HIS CYS ASN ILE ASN GLU SER LYS TRP ASN ASN THR LEU SEQRES 19 A 382 GLN LYS VAL GLY GLU GLU LEU ALA LYS HIS PHE PRO SER SEQRES 20 A 382 LYS THR ILE LYS PHE GLU PRO SER SER GLY GLY ASP LEU SEQRES 21 A 382 GLU ILE THR THR HIS SER PHE ASN CYS ARG GLY GLU PHE SEQRES 22 A 382 PHE TYR CYS ASN THR SER ASP LEU PHE ASN GLY THR TYR SEQRES 23 A 382 ARG ASN GLY THR TYR ASN HIS THR GLY ARG SER SER ASN SEQRES 24 A 382 GLY THR ILE THR LEU GLN CYS LYS ILE LYS GLN ILE ILE SEQRES 25 A 382 ASN MET TRP GLN GLU VAL GLY ARG ALA ILE TYR ALA PRO SEQRES 26 A 382 PRO ILE GLU GLY GLU ILE THR CYS ASN SER ASN ILE THR SEQRES 27 A 382 GLY LEU LEU LEU LEU ARG ASP GLY GLY GLN SER ASN GLU SEQRES 28 A 382 THR ASN ASP THR GLU THR PHE ARG PRO GLY GLY GLY ASP SEQRES 29 A 382 MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS TYR LYS SEQRES 30 A 382 VAL VAL GLU ILE LYS SEQRES 1 B 143 ALA VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 143 ALA GLY GLY SER LEU ARG LEU SER CYS THR ALA SER GLY SEQRES 3 B 143 ARG ILE SER SER SER TYR ASP MET GLY TRP PHE ARG GLN SEQRES 4 B 143 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE SER SEQRES 5 B 143 TRP SER GLY GLY THR THR ASP TYR ALA ASP SER VAL LYS SEQRES 6 B 143 GLY ARG PHE ALA ILE SER LYS ASP ASN ALA LYS ASN ALA SEQRES 7 B 143 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 143 ALA VAL TYR TYR CYS ALA ALA LYS TRP ARG PRO LEU ARG SEQRES 9 B 143 TYR SER ASP TYR PRO SER ASN SER ASP TYR TYR ASP TRP SEQRES 10 B 143 GLY GLN GLY THR GLN VAL THR VAL SER SER GLU GLN LYS SEQRES 11 B 143 LEU ILE SER GLU GLU ASP LEU HIS HIS HIS HIS HIS HIS MODRES 3RJQ ASN A 386 ASN GLYCOSYLATION SITE MODRES 3RJQ ASN A 289 ASN GLYCOSYLATION SITE MODRES 3RJQ ASN A 276 ASN GLYCOSYLATION SITE MODRES 3RJQ ASN A 262 ASN GLYCOSYLATION SITE MODRES 3RJQ ASN A 234 ASN GLYCOSYLATION SITE MODRES 3RJQ ASN A 397 ASN GLYCOSYLATION SITE MODRES 3RJQ ASN A 241 ASN GLYCOSYLATION SITE HET NAG A 734 14 HET NAG A 741 14 HET NAG A 762 14 HET NAG A 776 14 HET NAG A 789 14 HET NAG A 886 14 HET NAG A 892 14 HET NAG A 897 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 8(C8 H15 N O6) HELIX 1 1 GLU A 64 CYS A 74 1 11 HELIX 2 2 ASN A 98 LEU A 116 1 19 HELIX 3 3 ASN A 334 PHE A 353 1 20 HELIX 4 4 ASP A 368 THR A 373 1 6 HELIX 5 5 MET A 475 SER A 481 1 7 HELIX 6 6 LYS B 83 THR B 87 5 5 SHEET 1 A 5 LYS A 46 GLU A 47 0 SHEET 2 A 5 TYR A 486 GLU A 490 -1 O GLU A 490 N LYS A 46 SHEET 3 A 5 PHE A 223 CYS A 228 -1 N ALA A 224 O VAL A 489 SHEET 4 A 5 VAL A 242 VAL A 245 -1 O VAL A 245 N ILE A 225 SHEET 5 A 5 MET A 84 VAL A 85 -1 N MET A 84 O THR A 244 SHEET 1 B 3 VAL A 75 PRO A 76 0 SHEET 2 B 3 PHE A 53 SER A 56 1 N CYS A 54 O VAL A 75 SHEET 3 B 3 HIS A 216 CYS A 218 -1 O CYS A 218 N PHE A 53 SHEET 1 C 2 GLU A 91 ASN A 94 0 SHEET 2 C 2 THR A 236 CYS A 239 -1 O GLY A 237 N PHE A 93 SHEET 1 D 4 LEU A 259 LEU A 261 0 SHEET 2 D 4 CYS A 445 ARG A 456 -1 O THR A 450 N LEU A 260 SHEET 3 D 4 ILE A 284 CYS A 296 -1 N VAL A 292 O ILE A 449 SHEET 4 D 4 ILE A 271 ARG A 273 -1 N ILE A 271 O HIS A 287 SHEET 1 E 3 LEU A 259 LEU A 261 0 SHEET 2 E 3 CYS A 445 ARG A 456 -1 O THR A 450 N LEU A 260 SHEET 3 E 3 PHE A 468 PRO A 470 -1 O ARG A 469 N LEU A 455 SHEET 1 F 4 HIS A 330 ILE A 333 0 SHEET 2 F 4 ILE A 414 LYS A 419 -1 O ILE A 414 N ILE A 333 SHEET 3 F 4 GLU A 381 CYS A 385 -1 N TYR A 384 O LYS A 419 SHEET 4 F 4 HIS A 374 CYS A 378 -1 N HIS A 374 O CYS A 385 SHEET 1 G 3 ILE A 359 LYS A 360 0 SHEET 2 G 3 GLY A 393 TYR A 395 -1 O TYR A 395 N ILE A 359 SHEET 3 G 3 TYR A 400 ASN A 401 -1 O TYR A 400 N THR A 394 SHEET 1 H 4 LEU B 4 SER B 7 0 SHEET 2 H 4 LEU B 18 ALA B 24 -1 O SER B 21 N SER B 7 SHEET 3 H 4 ALA B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 H 4 PHE B 67 ASP B 72 -1 N SER B 70 O TYR B 79 SHEET 1 I 6 GLY B 10 GLN B 13 0 SHEET 2 I 6 THR B 107 SER B 112 1 O THR B 110 N GLY B 10 SHEET 3 I 6 ALA B 88 TRP B 96 -1 N TYR B 90 O THR B 107 SHEET 4 I 6 TYR B 32 GLN B 39 -1 N PHE B 37 O TYR B 91 SHEET 5 I 6 ARG B 45 SER B 52 -1 O ALA B 49 N TRP B 36 SHEET 6 I 6 THR B 57 TYR B 59 -1 O ASP B 58 N ALA B 50 SHEET 1 J 4 GLY B 10 GLN B 13 0 SHEET 2 J 4 THR B 107 SER B 112 1 O THR B 110 N GLY B 10 SHEET 3 J 4 ALA B 88 TRP B 96 -1 N TYR B 90 O THR B 107 SHEET 4 J 4 ASP B 102 TRP B 103 -1 O ASP B 102 N ALA B 94 SSBOND 1 CYS A 54 CYS A 74 1555 1555 2.02 SSBOND 2 CYS A 218 CYS A 247 1555 1555 2.03 SSBOND 3 CYS A 228 CYS A 239 1555 1555 2.03 SSBOND 4 CYS A 296 CYS A 331 1555 1555 2.02 SSBOND 5 CYS A 378 CYS A 445 1555 1555 2.03 SSBOND 6 CYS A 385 CYS A 418 1555 1555 2.03 SSBOND 7 CYS B 22 CYS B 92 1555 1555 2.03 LINK ND2 ASN A 234 C1 NAG A 734 1555 1555 1.44 LINK ND2 ASN A 241 C1 NAG A 741 1555 1555 1.48 LINK ND2 ASN A 262 C1 NAG A 762 1555 1555 1.44 LINK ND2 ASN A 276 C1 NAG A 776 1555 1555 1.44 LINK ND2 ASN A 289 C1 NAG A 789 1555 1555 1.44 LINK ND2 ASN A 386 C1 NAG A 886 1555 1555 1.44 LINK ND2 ASN A 397 C1 NAG A 897 1555 1555 1.44 CISPEP 1 PRO A 81 GLN A 82 0 -16.45 CRYST1 66.600 66.600 266.920 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003746 0.00000