HEADER MEMBRANE PROTEIN/EXOCYTOSIS 17-APR-11 3RK3 TITLE TRUNCATED SNARE COMPLEX WITH COMPLEXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VAMP2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 28-60; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SYNTAXIN 1A; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 191-253; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: SNAP25; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: UNP RESIDUES 7-82; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: SNAP25; COMPND 18 CHAIN: D; COMPND 19 FRAGMENT: UNP RESIDUES 141-203; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: COMPLEXIN-1; COMPND 23 CHAIN: E; COMPND 24 FRAGMENT: UNP RESIDUES 26-83; COMPND 25 SYNONYM: COMPLEXIN I, CPX I, SYNAPHIN-2; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: VAMP2, SYB2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 9 ORGANISM_TAXID: 10116; SOURCE 10 GENE: STX1A, SAP; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: SNAP25, SNAP; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 GENE: SNAP25, SNAP; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 MOL_ID: 5; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_COMMON: HUMAN; SOURCE 28 ORGANISM_TAXID: 9606; SOURCE 29 GENE: CPLX1; SOURCE 30 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 31 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SNARE PROTEINS, MEMBRANE FUSION, MEMBRANE PROTEIN-EXOCYTOSIS- KEYWDS 2 TRANSPORT PROTEIN COMPLEX, MEMBRANE PROTEIN-EXOCYTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.KUEMMEL,K.M.REINISCH REVDAT 3 13-SEP-23 3RK3 1 SEQADV REVDAT 2 24-AUG-11 3RK3 1 JRNL REVDAT 1 27-JUL-11 3RK3 0 JRNL AUTH D.KUMMEL,S.S.KRISHNAKUMAR,D.T.RADOFF,F.LI,C.G.GIRAUDO, JRNL AUTH 2 F.PINCET,J.E.ROTHMAN,K.M.REINISCH JRNL TITL COMPLEXIN CROSS-LINKS PREFUSION SNARES INTO A ZIGZAG ARRAY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 927 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21785414 JRNL DOI 10.1038/NSMB.2101 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 6172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.272 REMARK 3 R VALUE (WORKING SET) : 0.270 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 314 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 433 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 22 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2215 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.58000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : -11.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 10.83000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.674 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.475 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 65.568 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2475 ; 0.054 ; 0.030 REMARK 3 BOND LENGTHS OTHERS (A): 1540 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2942 ; 1.280 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3743 ; 0.773 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 5.563 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;33.762 ;25.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 453 ;16.636 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.633 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 323 ; 0.038 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2478 ; 0.001 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 402 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1634 ; 4.741 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 559 ; 0.859 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2172 ; 7.096 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 840 ;10.921 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 770 ;17.249 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7544 -6.1956 64.9213 REMARK 3 T TENSOR REMARK 3 T11: 0.0413 T22: 0.1854 REMARK 3 T33: 0.1644 T12: 0.0089 REMARK 3 T13: -0.0683 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 0.9981 L22: 6.2706 REMARK 3 L33: 12.2220 L12: -0.7378 REMARK 3 L13: -3.1767 L23: -1.2576 REMARK 3 S TENSOR REMARK 3 S11: -0.0906 S12: -0.1354 S13: 0.0820 REMARK 3 S21: 0.4004 S22: -0.0483 S23: -0.0491 REMARK 3 S31: -0.0985 S32: 0.4747 S33: 0.1390 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6148 -4.1746 38.6770 REMARK 3 T TENSOR REMARK 3 T11: 0.0513 T22: 0.1727 REMARK 3 T33: 0.0948 T12: 0.0121 REMARK 3 T13: -0.0611 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.0847 L22: 2.3226 REMARK 3 L33: 6.7770 L12: 0.1130 REMARK 3 L13: -2.7020 L23: -0.2121 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: 0.3611 S13: 0.2992 REMARK 3 S21: -0.1723 S22: 0.1184 S23: 0.0287 REMARK 3 S31: -0.2693 S32: -0.4616 S33: -0.0809 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 210 B 250 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8955 -6.6730 28.3271 REMARK 3 T TENSOR REMARK 3 T11: 0.1745 T22: 0.2334 REMARK 3 T33: 0.3446 T12: -0.0299 REMARK 3 T13: 0.0912 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.2519 L22: 1.7528 REMARK 3 L33: 1.2087 L12: -0.5732 REMARK 3 L13: 0.8089 L23: -0.9291 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: 0.1288 S13: 0.0124 REMARK 3 S21: -0.2932 S22: -0.4236 S23: -0.4947 REMARK 3 S31: -0.0610 S32: 0.2265 S33: 0.4695 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 30 C 74 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9926 -2.9326 36.0808 REMARK 3 T TENSOR REMARK 3 T11: 0.0612 T22: 0.1476 REMARK 3 T33: 0.1356 T12: -0.0431 REMARK 3 T13: 0.0744 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.5689 L22: 3.1388 REMARK 3 L33: 6.2144 L12: 0.4535 REMARK 3 L13: -0.5985 L23: -3.9224 REMARK 3 S TENSOR REMARK 3 S11: -0.0957 S12: 0.0173 S13: -0.1749 REMARK 3 S21: -0.1819 S22: -0.2818 S23: -0.4651 REMARK 3 S31: 0.0265 S32: 0.5439 S33: 0.3775 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 161 D 203 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5149 5.1030 23.6730 REMARK 3 T TENSOR REMARK 3 T11: 0.2764 T22: 0.2162 REMARK 3 T33: 0.0491 T12: -0.0154 REMARK 3 T13: -0.0305 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.0748 L22: 1.0600 REMARK 3 L33: 9.1895 L12: 0.3577 REMARK 3 L13: -0.9636 L23: -3.0997 REMARK 3 S TENSOR REMARK 3 S11: -0.1370 S12: -0.0491 S13: -0.0117 REMARK 3 S21: -0.0847 S22: -0.1994 S23: -0.1159 REMARK 3 S31: -0.0247 S32: 0.3461 S33: 0.3364 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 24 E 69 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3183 -19.9343 12.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.5438 T22: 0.4066 REMARK 3 T33: 0.0743 T12: 0.0680 REMARK 3 T13: 0.1018 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 2.6261 L22: 3.0754 REMARK 3 L33: 12.2471 L12: -2.4799 REMARK 3 L13: -5.0069 L23: 6.3344 REMARK 3 S TENSOR REMARK 3 S11: -0.3595 S12: -0.2116 S13: -0.4472 REMARK 3 S21: -0.3162 S22: -0.2036 S23: 0.2859 REMARK 3 S31: -0.5150 S32: 0.2350 S33: 0.5632 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 189 B 209 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7517 -17.7552 67.6458 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.1603 REMARK 3 T33: 0.1605 T12: 0.0258 REMARK 3 T13: -0.0751 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.7811 L22: 0.1446 REMARK 3 L33: 5.2825 L12: -0.0682 REMARK 3 L13: -2.1421 L23: 0.2676 REMARK 3 S TENSOR REMARK 3 S11: -0.0361 S12: 0.0313 S13: -0.0517 REMARK 3 S21: 0.1099 S22: 0.0084 S23: -0.1492 REMARK 3 S31: 0.0865 S32: -0.0912 S33: 0.0277 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 29 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7672 -28.6537 73.9012 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.0811 REMARK 3 T33: 0.2318 T12: -0.0354 REMARK 3 T13: -0.0279 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.0662 L22: 0.9310 REMARK 3 L33: 9.7758 L12: 1.4731 REMARK 3 L13: -2.7567 L23: -2.4999 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: 0.0802 S13: 0.0630 REMARK 3 S21: -0.0840 S22: 0.0803 S23: 0.0912 REMARK 3 S31: 0.8875 S32: -0.3387 S33: -0.1172 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 139 D 160 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4384 -13.7505 67.2066 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.1526 REMARK 3 T33: 0.2017 T12: 0.0049 REMARK 3 T13: -0.0842 T23: -0.0498 REMARK 3 L TENSOR REMARK 3 L11: 1.4603 L22: -0.3526 REMARK 3 L33: 0.5730 L12: 0.4023 REMARK 3 L13: 1.0482 L23: 0.5927 REMARK 3 S TENSOR REMARK 3 S11: -0.0390 S12: -0.0599 S13: -0.0616 REMARK 3 S21: 0.0172 S22: 0.0739 S23: -0.0879 REMARK 3 S31: -0.0829 S32: 0.0499 S33: -0.0350 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 70 E 73 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8063 -9.6757 41.6218 REMARK 3 T TENSOR REMARK 3 T11: 0.0506 T22: 0.6992 REMARK 3 T33: 0.3839 T12: -0.0150 REMARK 3 T13: -0.0226 T23: -0.2383 REMARK 3 L TENSOR REMARK 3 L11: 33.4778 L22: 108.1712 REMARK 3 L33: 26.3304 L12: -39.0212 REMARK 3 L13: 17.4690 L23: -45.7458 REMARK 3 S TENSOR REMARK 3 S11: -0.5080 S12: -4.4342 S13: 1.3199 REMARK 3 S21: 0.2244 S22: 2.4777 S23: 2.0256 REMARK 3 S31: 0.0843 S32: -2.1924 S33: -1.9697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3RK2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13-15% POLYETHYLENEGLYCOL (PEG) REMARK 280 5000MME, 0.2 M AMMONIUM SULFATE, 0.01 M EDTA, 0.1 M TRIS PH 7.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.93050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.36450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.93050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.36450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 LEU A 26 REMARK 465 THR B 251 REMARK 465 LYS B 252 REMARK 465 LYS B 253 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 HIS C 5 REMARK 465 MET C 6 REMARK 465 MET C 7 REMARK 465 ARG C 8 REMARK 465 ASN C 9 REMARK 465 GLU C 75 REMARK 465 LYS C 76 REMARK 465 ASN C 77 REMARK 465 LEU C 78 REMARK 465 LYS C 79 REMARK 465 ASP C 80 REMARK 465 LEU C 81 REMARK 465 GLY C 82 REMARK 465 TRP C 83 REMARK 465 GLY E 21 REMARK 465 PRO E 22 REMARK 465 LEU E 23 REMARK 465 LYS E 74 REMARK 465 LYS E 75 REMARK 465 GLU E 76 REMARK 465 GLU E 77 REMARK 465 ARG E 78 REMARK 465 GLU E 79 REMARK 465 ALA E 80 REMARK 465 GLU E 81 REMARK 465 ALA E 82 REMARK 465 GLN E 83 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 201 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG C 45 CG CD NE CZ NH1 NH2 REMARK 480 GLU D 151 CG CD OE1 OE2 REMARK 480 ILE E 72 CG1 CG2 CD1 REMARK 480 LYS E 73 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU C 26 OG1 THR C 29 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS E 73 CB LYS E 73 CG -0.309 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE E 72 CG1 - CB - CG2 ANGL. DEV. = 18.6 DEGREES REMARK 500 ILE E 72 CA - CB - CG1 ANGL. DEV. = -21.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 190 -38.89 -38.55 REMARK 500 ILE B 195 -74.50 -64.90 REMARK 500 ALA B 247 36.55 -88.06 REMARK 500 VAL B 248 -40.32 -135.35 REMARK 500 ARG D 161 -70.44 -50.39 REMARK 500 SER E 25 -37.82 -141.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RK2 RELATED DB: PDB DBREF 3RK3 A 28 60 UNP P63027 VAMP2_HUMAN 28 60 DBREF 3RK3 B 191 253 UNP P32851 STX1A_RAT 191 253 DBREF 3RK3 C 7 82 UNP P60880 SNP25_HUMAN 7 82 DBREF 3RK3 D 141 203 UNP P60880 SNP25_HUMAN 141 203 DBREF 3RK3 E 26 83 UNP O14810 CPLX1_HUMAN 26 83 SEQADV 3RK3 GLY A 24 UNP P63027 EXPRESSION TAG SEQADV 3RK3 PRO A 25 UNP P63027 EXPRESSION TAG SEQADV 3RK3 LEU A 26 UNP P63027 EXPRESSION TAG SEQADV 3RK3 GLY A 27 UNP P63027 EXPRESSION TAG SEQADV 3RK3 GLY B 189 UNP P32851 EXPRESSION TAG SEQADV 3RK3 SER B 190 UNP P32851 EXPRESSION TAG SEQADV 3RK3 GLY C 3 UNP P60880 EXPRESSION TAG SEQADV 3RK3 SER C 4 UNP P60880 EXPRESSION TAG SEQADV 3RK3 HIS C 5 UNP P60880 EXPRESSION TAG SEQADV 3RK3 MET C 6 UNP P60880 EXPRESSION TAG SEQADV 3RK3 TRP C 83 UNP P60880 EXPRESSION TAG SEQADV 3RK3 GLY D 139 UNP P60880 EXPRESSION TAG SEQADV 3RK3 SER D 140 UNP P60880 EXPRESSION TAG SEQADV 3RK3 GLY E 21 UNP O14810 EXPRESSION TAG SEQADV 3RK3 PRO E 22 UNP O14810 EXPRESSION TAG SEQADV 3RK3 LEU E 23 UNP O14810 EXPRESSION TAG SEQADV 3RK3 GLY E 24 UNP O14810 EXPRESSION TAG SEQADV 3RK3 SER E 25 UNP O14810 EXPRESSION TAG SEQADV 3RK3 LEU E 27 UNP O14810 ASP 27 ENGINEERED MUTATION SEQADV 3RK3 PHE E 34 UNP O14810 GLU 34 ENGINEERED MUTATION SEQADV 3RK3 ALA E 37 UNP O14810 ARG 37 ENGINEERED MUTATION SEQRES 1 A 37 GLY PRO LEU GLY SER ASN ARG ARG LEU GLN GLN THR GLN SEQRES 2 A 37 ALA GLN VAL ASP GLU VAL VAL ASP ILE MET ARG VAL ASN SEQRES 3 A 37 VAL ASP LYS VAL LEU GLU ARG ASP GLN LYS LEU SEQRES 1 B 65 GLY SER ALA LEU SER GLU ILE GLU THR ARG HIS SER GLU SEQRES 2 B 65 ILE ILE LYS LEU GLU ASN SER ILE ARG GLU LEU HIS ASP SEQRES 3 B 65 MET PHE MET ASP MET ALA MET LEU VAL GLU SER GLN GLY SEQRES 4 B 65 GLU MET ILE ASP ARG ILE GLU TYR ASN VAL GLU HIS ALA SEQRES 5 B 65 VAL ASP TYR VAL GLU ARG ALA VAL SER ASP THR LYS LYS SEQRES 1 C 81 GLY SER HIS MET MET ARG ASN GLU LEU GLU GLU MET GLN SEQRES 2 C 81 ARG ARG ALA ASP GLN LEU ALA ASP GLU SER LEU GLU SER SEQRES 3 C 81 THR ARG ARG MET LEU GLN LEU VAL GLU GLU SER LYS ASP SEQRES 4 C 81 ALA GLY ILE ARG THR LEU VAL MET LEU ASP GLU GLN GLY SEQRES 5 C 81 GLU GLN LEU ASP ARG VAL GLU GLU GLY MET ASN HIS ILE SEQRES 6 C 81 ASN GLN ASP MET LYS GLU ALA GLU LYS ASN LEU LYS ASP SEQRES 7 C 81 LEU GLY TRP SEQRES 1 D 65 GLY SER ALA ARG GLU ASN GLU MET ASP GLU ASN LEU GLU SEQRES 2 D 65 GLN VAL SER GLY ILE ILE GLY ASN LEU ARG HIS MET ALA SEQRES 3 D 65 LEU ASP MET GLY ASN GLU ILE ASP THR GLN ASN ARG GLN SEQRES 4 D 65 ILE ASP ARG ILE MET GLU LYS ALA ASP SER ASN LYS THR SEQRES 5 D 65 ARG ILE ASP GLU ALA ASN GLN ARG ALA THR LYS MET LEU SEQRES 1 E 63 GLY PRO LEU GLY SER LYS LEU PRO ASP ALA ALA LYS LYS SEQRES 2 E 63 PHE GLU GLU ALA GLN GLU ALA LEU ARG GLN ALA GLU GLU SEQRES 3 E 63 GLU ARG LYS ALA LYS TYR ALA LYS MET GLU ALA GLU ARG SEQRES 4 E 63 GLU ALA VAL ARG GLN GLY ILE ARG ASP LYS TYR GLY ILE SEQRES 5 E 63 LYS LYS LYS GLU GLU ARG GLU ALA GLU ALA GLN HELIX 1 1 GLY A 27 LEU A 60 1 34 HELIX 2 2 GLY B 189 ALA B 247 1 59 HELIX 3 3 GLU C 10 ALA C 74 1 65 HELIX 4 4 GLY D 139 LEU D 203 1 65 HELIX 5 5 PRO E 28 GLY E 71 1 44 CRYST1 75.861 52.729 128.712 90.00 95.21 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013182 0.000000 0.001203 0.00000 SCALE2 0.000000 0.018965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007802 0.00000