HEADER HYDROLASE 18-APR-11 3RKJ TITLE CRYSTAL STRUCTURE OF NEW DELHI METALLO-BETA-LACTAMASE-1 FROM TITLE 2 KLEBSIELLA PNUEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE NDM-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 39-270; COMPND 5 SYNONYM: NDM-1, METALLO-BETA-LACTAMASE NDM-1; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLANDM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, ALPHA-BETA STRUCTURE, HYDROLASE, STRUCTURES OF MTB KEYWDS 3 PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN MTB INHIBITORS, MTBI EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.TESAR,R.JEDRZEJCZAK,T.A.BINKOWSKI,G.BABNIGG,J.SACCHETTINI, AUTHOR 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG), AUTHOR 3 STRUCTURES OF MTB PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN MTB AUTHOR 4 INHIBITORS (MTBI) REVDAT 5 13-SEP-23 3RKJ 1 REMARK SEQADV REVDAT 4 28-MAR-12 3RKJ 1 JRNL REVDAT 3 28-SEP-11 3RKJ 1 REMARK REVDAT 2 21-SEP-11 3RKJ 1 JRNL VERSN REVDAT 1 18-MAY-11 3RKJ 0 JRNL AUTH Y.KIM,C.TESAR,J.MIRE,R.JEDRZEJCZAK,A.BINKOWSKI,G.BABNIGG, JRNL AUTH 2 J.SACCHETTINI,A.JOACHIMIAK JRNL TITL STRUCTURE OF APO- AND MONOMETALATED FORMS OF NDM-1 A HIGHLY JRNL TITL 2 POTENT CARBAPENEM-HYDROLYZING METALLO-BETA-LACTAMASE JRNL REF PLOS ONE V. 6 24621 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21931780 JRNL DOI 10.1371/JOURNAL.PONE.0024621 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 26368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4564 - 4.3071 0.91 2465 132 0.1995 0.2245 REMARK 3 2 4.3071 - 3.4193 0.92 2438 126 0.1737 0.1893 REMARK 3 3 3.4193 - 2.9873 0.94 2483 134 0.1801 0.2445 REMARK 3 4 2.9873 - 2.7142 0.95 2500 139 0.2000 0.2694 REMARK 3 5 2.7142 - 2.5197 0.96 2526 124 0.1973 0.2236 REMARK 3 6 2.5197 - 2.3712 0.96 2547 119 0.1908 0.2966 REMARK 3 7 2.3712 - 2.2525 0.96 2517 140 0.2042 0.3018 REMARK 3 8 2.2525 - 2.1544 0.96 2542 122 0.1969 0.3026 REMARK 3 9 2.1544 - 2.0715 0.97 2510 121 0.2024 0.2921 REMARK 3 10 2.0715 - 2.0000 0.96 2505 178 0.2053 0.2787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 54.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.50390 REMARK 3 B22 (A**2) : -0.11480 REMARK 3 B33 (A**2) : -1.38910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.56540 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3573 REMARK 3 ANGLE : 1.235 4880 REMARK 3 CHIRALITY : 0.100 536 REMARK 3 PLANARITY : 0.007 647 REMARK 3 DIHEDRAL : 14.518 1238 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 45:57) REMARK 3 ORIGIN FOR THE GROUP (A): -34.5084 12.6186 31.0748 REMARK 3 T TENSOR REMARK 3 T11: 0.1454 T22: 0.1408 REMARK 3 T33: 0.1803 T12: 0.0387 REMARK 3 T13: -0.0134 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.4680 L22: 0.3245 REMARK 3 L33: 0.8403 L12: -0.3713 REMARK 3 L13: 0.3714 L23: -0.2237 REMARK 3 S TENSOR REMARK 3 S11: -0.1222 S12: 0.0336 S13: 0.1311 REMARK 3 S21: -0.0362 S22: -0.1643 S23: -0.2382 REMARK 3 S31: -0.0515 S32: -0.0015 S33: 0.1383 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 58:73) REMARK 3 ORIGIN FOR THE GROUP (A): -34.0903 9.2165 18.9872 REMARK 3 T TENSOR REMARK 3 T11: 0.1448 T22: -0.0335 REMARK 3 T33: 0.0393 T12: -0.0138 REMARK 3 T13: -0.0215 T23: 0.0934 REMARK 3 L TENSOR REMARK 3 L11: 0.8711 L22: 0.8550 REMARK 3 L33: 0.0457 L12: 0.2235 REMARK 3 L13: -0.0142 L23: 0.1892 REMARK 3 S TENSOR REMARK 3 S11: -0.1374 S12: 0.2820 S13: 0.0383 REMARK 3 S21: -0.1925 S22: 0.0337 S23: 0.0958 REMARK 3 S31: -0.0328 S32: 0.0039 S33: 0.0339 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 74:94) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4664 4.4181 30.2467 REMARK 3 T TENSOR REMARK 3 T11: 0.1032 T22: 0.1202 REMARK 3 T33: 0.0695 T12: -0.0056 REMARK 3 T13: 0.0153 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.4378 L22: 0.9716 REMARK 3 L33: 0.3404 L12: 0.1899 REMARK 3 L13: -0.3525 L23: 0.0333 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.0474 S13: 0.0053 REMARK 3 S21: 0.2054 S22: -0.0449 S23: 0.0871 REMARK 3 S31: -0.0705 S32: 0.1691 S33: -0.0080 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 95:137) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2660 8.8409 27.3948 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.1010 REMARK 3 T33: 0.1024 T12: -0.0092 REMARK 3 T13: -0.0033 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.6639 L22: 0.6362 REMARK 3 L33: 0.5437 L12: -0.3404 REMARK 3 L13: -0.0103 L23: -0.3886 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.0159 S13: 0.0652 REMARK 3 S21: -0.0936 S22: 0.0229 S23: -0.0425 REMARK 3 S31: 0.1203 S32: -0.1666 S33: -0.0093 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 138:166) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3400 -4.4598 21.1894 REMARK 3 T TENSOR REMARK 3 T11: 0.0436 T22: -0.2772 REMARK 3 T33: -0.1609 T12: 0.1169 REMARK 3 T13: 0.1121 T23: -0.3496 REMARK 3 L TENSOR REMARK 3 L11: 0.6502 L22: 0.5993 REMARK 3 L33: 0.8252 L12: -0.1762 REMARK 3 L13: 0.2269 L23: -0.1433 REMARK 3 S TENSOR REMARK 3 S11: 0.1612 S12: -0.1226 S13: -0.4583 REMARK 3 S21: -0.2000 S22: 0.1525 S23: 0.1538 REMARK 3 S31: 0.1288 S32: 0.1670 S33: -0.0562 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 167:194) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8140 -10.1710 27.4742 REMARK 3 T TENSOR REMARK 3 T11: 0.0039 T22: 0.1471 REMARK 3 T33: 0.1198 T12: 0.0262 REMARK 3 T13: -0.0198 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 0.5118 L22: 0.3814 REMARK 3 L33: 0.4165 L12: 0.0118 REMARK 3 L13: -0.3073 L23: 0.0952 REMARK 3 S TENSOR REMARK 3 S11: -0.2247 S12: -0.0478 S13: 0.2285 REMARK 3 S21: 0.0049 S22: -0.0646 S23: -0.0386 REMARK 3 S31: 0.0402 S32: 0.0998 S33: 0.0936 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 195:212) REMARK 3 ORIGIN FOR THE GROUP (A): -34.5165 -6.1632 27.2293 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.1100 REMARK 3 T33: 0.1341 T12: -0.0429 REMARK 3 T13: 0.0393 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.8070 L22: 0.3518 REMARK 3 L33: 0.5493 L12: 0.0430 REMARK 3 L13: -0.2159 L23: 0.3348 REMARK 3 S TENSOR REMARK 3 S11: -0.1211 S12: -0.1344 S13: -0.0247 REMARK 3 S21: 0.1148 S22: -0.0704 S23: 0.1335 REMARK 3 S31: 0.0818 S32: -0.0321 S33: 0.0783 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 213:228) REMARK 3 ORIGIN FOR THE GROUP (A): -35.4821 -11.1410 12.0106 REMARK 3 T TENSOR REMARK 3 T11: 0.1939 T22: 0.2447 REMARK 3 T33: 0.1969 T12: 0.0246 REMARK 3 T13: -0.0091 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.0063 L22: 0.0386 REMARK 3 L33: 0.9432 L12: 0.1138 REMARK 3 L13: -0.2255 L23: -0.1912 REMARK 3 S TENSOR REMARK 3 S11: -0.3032 S12: 0.2193 S13: -0.0247 REMARK 3 S21: -0.0148 S22: -0.0325 S23: -0.0649 REMARK 3 S31: -0.1506 S32: -0.2379 S33: 0.1015 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 229:255) REMARK 3 ORIGIN FOR THE GROUP (A): -37.8182 -9.2851 25.3755 REMARK 3 T TENSOR REMARK 3 T11: 0.1031 T22: 0.0815 REMARK 3 T33: 0.0715 T12: -0.0188 REMARK 3 T13: 0.0080 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.4893 L22: 0.6205 REMARK 3 L33: 0.2909 L12: 0.1312 REMARK 3 L13: -0.0020 L23: -0.1492 REMARK 3 S TENSOR REMARK 3 S11: -0.1654 S12: 0.0457 S13: -0.0233 REMARK 3 S21: -0.1206 S22: 0.0848 S23: 0.1588 REMARK 3 S31: 0.0665 S32: 0.0760 S33: 0.0377 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 256:270) REMARK 3 ORIGIN FOR THE GROUP (A): -41.5512 -15.1906 16.9260 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.1935 REMARK 3 T33: 0.1184 T12: -0.0455 REMARK 3 T13: -0.0135 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.5597 L22: 0.9928 REMARK 3 L33: 2.2799 L12: -0.3468 REMARK 3 L13: -0.6833 L23: 1.1179 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: 0.3077 S13: -0.1773 REMARK 3 S21: -0.2145 S22: 0.0399 S23: 0.0290 REMARK 3 S31: -0.2324 S32: -0.3426 S33: 0.0462 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 45:57) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5788 13.9588 4.6297 REMARK 3 T TENSOR REMARK 3 T11: 0.1896 T22: -0.2955 REMARK 3 T33: 0.2125 T12: 0.0211 REMARK 3 T13: 0.0435 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 0.3475 L22: 0.1875 REMARK 3 L33: 0.4528 L12: -0.1649 REMARK 3 L13: 0.1981 L23: 0.1096 REMARK 3 S TENSOR REMARK 3 S11: 0.1817 S12: 0.0411 S13: 0.1058 REMARK 3 S21: -0.0242 S22: -0.2687 S23: -0.2012 REMARK 3 S31: 0.2233 S32: 0.0065 S33: 0.0436 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 58:94) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0269 17.9245 7.1380 REMARK 3 T TENSOR REMARK 3 T11: 0.0743 T22: 0.0379 REMARK 3 T33: 0.0708 T12: -0.0045 REMARK 3 T13: -0.0312 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 0.3433 L22: 0.5072 REMARK 3 L33: 0.3281 L12: 0.1045 REMARK 3 L13: -0.2751 L23: -0.1460 REMARK 3 S TENSOR REMARK 3 S11: 0.0758 S12: 0.0746 S13: -0.0862 REMARK 3 S21: -0.0955 S22: -0.0360 S23: -0.1892 REMARK 3 S31: -0.0866 S32: -0.1152 S33: -0.0138 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 95:137) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8646 15.4575 14.7601 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.0909 REMARK 3 T33: 0.1392 T12: 0.0153 REMARK 3 T13: 0.0180 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.3469 L22: 0.2680 REMARK 3 L33: 0.5539 L12: 0.2447 REMARK 3 L13: 0.0140 L23: 0.3072 REMARK 3 S TENSOR REMARK 3 S11: -0.0935 S12: 0.0135 S13: -0.0054 REMARK 3 S21: -0.0350 S22: 0.0311 S23: 0.0079 REMARK 3 S31: 0.0938 S32: -0.0455 S33: 0.0488 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 138:166) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4162 28.6414 20.3031 REMARK 3 T TENSOR REMARK 3 T11: -0.0093 T22: 0.0686 REMARK 3 T33: 0.1044 T12: 0.0940 REMARK 3 T13: -0.0261 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.9992 L22: 0.7788 REMARK 3 L33: 0.5028 L12: -0.3601 REMARK 3 L13: 0.0009 L23: -0.1123 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: -0.3366 S13: -0.3438 REMARK 3 S21: -0.0934 S22: 0.0244 S23: 0.3056 REMARK 3 S31: -0.2173 S32: 0.0568 S33: 0.0431 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 167:194) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1787 34.3311 15.0358 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: 0.1328 REMARK 3 T33: 0.0992 T12: -0.0091 REMARK 3 T13: -0.0336 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.2445 L22: 0.6082 REMARK 3 L33: 1.0867 L12: 0.0758 REMARK 3 L13: 0.1206 L23: 0.3168 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: -0.0263 S13: -0.0491 REMARK 3 S21: 0.1392 S22: 0.0510 S23: -0.0234 REMARK 3 S31: 0.1648 S32: -0.2497 S33: 0.0112 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 195:215) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9093 30.4957 2.4998 REMARK 3 T TENSOR REMARK 3 T11: 0.1346 T22: 0.1162 REMARK 3 T33: 0.1190 T12: 0.0257 REMARK 3 T13: 0.0256 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.6701 L22: 0.7685 REMARK 3 L33: 0.3415 L12: -0.3291 REMARK 3 L13: -0.2061 L23: 0.1900 REMARK 3 S TENSOR REMARK 3 S11: 0.1180 S12: 0.0920 S13: 0.0009 REMARK 3 S21: -0.1256 S22: -0.0927 S23: -0.1047 REMARK 3 S31: -0.0045 S32: -0.0392 S33: -0.0356 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 216:239) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2925 37.8170 2.9433 REMARK 3 T TENSOR REMARK 3 T11: 0.1167 T22: 0.1457 REMARK 3 T33: 0.1041 T12: -0.0442 REMARK 3 T13: -0.0167 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.3327 L22: 0.5547 REMARK 3 L33: 0.5272 L12: 0.0992 REMARK 3 L13: 0.0474 L23: 0.1557 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: -0.0132 S13: 0.1305 REMARK 3 S21: -0.0525 S22: -0.0688 S23: 0.1344 REMARK 3 S31: -0.0185 S32: -0.1197 S33: 0.0500 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 240:255) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5755 29.6620 -0.2397 REMARK 3 T TENSOR REMARK 3 T11: 0.1593 T22: 0.1044 REMARK 3 T33: 0.0919 T12: -0.0059 REMARK 3 T13: -0.0186 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.7408 L22: 0.5231 REMARK 3 L33: 0.3664 L12: 0.1822 REMARK 3 L13: 0.0704 L23: 0.2658 REMARK 3 S TENSOR REMARK 3 S11: 0.2330 S12: 0.0695 S13: -0.0042 REMARK 3 S21: -0.1498 S22: 0.1402 S23: 0.0095 REMARK 3 S31: 0.0231 S32: -0.0253 S33: -0.0768 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 256:270) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5003 39.6184 -4.0962 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: 0.1119 REMARK 3 T33: 0.0772 T12: 0.0272 REMARK 3 T13: 0.0338 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 5.0851 L22: 0.7651 REMARK 3 L33: 0.3168 L12: -1.0906 REMARK 3 L13: 0.0284 L23: -0.1587 REMARK 3 S TENSOR REMARK 3 S11: -0.2571 S12: 0.3689 S13: 0.0599 REMARK 3 S21: 0.1348 S22: 0.1503 S23: -0.0237 REMARK 3 S31: -0.1579 S32: -0.0797 S33: 0.1029 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26835 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP, BALBES REMARK 200 STARTING MODEL: PDB ID 2YZ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULFATE 25.5 % (W/V) REMARK 280 PEG 4000, 15 % (V/V) GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.55650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 36 REMARK 465 ASN A 37 REMARK 465 ALA A 38 REMARK 465 MET A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 GLY A 42 REMARK 465 ASP A 43 REMARK 465 GLN A 44 REMARK 465 SER B 36 REMARK 465 ASN B 37 REMARK 465 ALA B 38 REMARK 465 MET B 39 REMARK 465 GLU B 40 REMARK 465 THR B 41 REMARK 465 GLY B 42 REMARK 465 ASP B 43 REMARK 465 GLN B 44 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 155.28 79.91 REMARK 500 ILE A 109 -58.12 -128.63 REMARK 500 ASP B 90 148.88 78.49 REMARK 500 ILE B 109 -56.75 -126.56 REMARK 500 ASP B 202 0.28 84.26 REMARK 500 HIS B 250 -59.49 -122.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 283 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC105101 RELATED DB: TARGETDB DBREF 3RKJ A 39 270 UNP C7C422 BLAN1_KLEPN 39 270 DBREF 3RKJ B 39 270 UNP C7C422 BLAN1_KLEPN 39 270 SEQADV 3RKJ SER A 36 UNP C7C422 EXPRESSION TAG SEQADV 3RKJ ASN A 37 UNP C7C422 EXPRESSION TAG SEQADV 3RKJ ALA A 38 UNP C7C422 EXPRESSION TAG SEQADV 3RKJ SER B 36 UNP C7C422 EXPRESSION TAG SEQADV 3RKJ ASN B 37 UNP C7C422 EXPRESSION TAG SEQADV 3RKJ ALA B 38 UNP C7C422 EXPRESSION TAG SEQRES 1 A 235 SER ASN ALA MET GLU THR GLY ASP GLN ARG PHE GLY ASP SEQRES 2 A 235 LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS SEQRES 3 A 235 THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA VAL ALA SEQRES 4 A 235 SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG VAL LEU SEQRES 5 A 235 VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR ALA GLN SEQRES 6 A 235 ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO VAL SEQRES 7 A 235 ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP LYS MET SEQRES 8 A 235 GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE ALA THR SEQRES 9 A 235 TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO GLN GLU SEQRES 10 A 235 GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE ALA ALA SEQRES 11 A 235 ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN PHE GLY SEQRES 12 A 235 PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS THR SER SEQRES 13 A 235 ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP ILE ALA SEQRES 14 A 235 PHE GLY GLY CYS LEU ILE LYS ASP SER LYS ALA LYS SER SEQRES 15 A 235 LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS TYR ALA SEQRES 16 A 235 ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS ALA SEQRES 17 A 235 SER MET ILE VAL MET SER HIS SER ALA PRO ASP SER ARG SEQRES 18 A 235 ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP LYS LEU SEQRES 19 A 235 ARG SEQRES 1 B 235 SER ASN ALA MET GLU THR GLY ASP GLN ARG PHE GLY ASP SEQRES 2 B 235 LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS SEQRES 3 B 235 THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA VAL ALA SEQRES 4 B 235 SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG VAL LEU SEQRES 5 B 235 VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR ALA GLN SEQRES 6 B 235 ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO VAL SEQRES 7 B 235 ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP LYS MET SEQRES 8 B 235 GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE ALA THR SEQRES 9 B 235 TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO GLN GLU SEQRES 10 B 235 GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE ALA ALA SEQRES 11 B 235 ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN PHE GLY SEQRES 12 B 235 PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS THR SER SEQRES 13 B 235 ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP ILE ALA SEQRES 14 B 235 PHE GLY GLY CYS LEU ILE LYS ASP SER LYS ALA LYS SER SEQRES 15 B 235 LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS TYR ALA SEQRES 16 B 235 ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS ALA SEQRES 17 B 235 SER MET ILE VAL MET SER HIS SER ALA PRO ASP SER ARG SEQRES 18 B 235 ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP LYS LEU SEQRES 19 B 235 ARG HET SO4 A 281 5 HET SO4 A 282 5 HET GOL A 283 6 HET SO4 B 281 5 HET SO4 B 282 5 HET SO4 B 283 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 5(O4 S 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 9 HOH *262(H2 O) HELIX 1 1 THR A 94 ILE A 109 1 16 HELIX 2 2 HIS A 122 GLY A 127 1 6 HELIX 3 3 GLY A 128 ALA A 135 1 8 HELIX 4 4 ALA A 143 ALA A 149 1 7 HELIX 5 5 PRO A 150 GLY A 153 5 4 HELIX 6 6 HIS A 228 PHE A 240 1 13 HELIX 7 7 ARG A 256 LYS A 268 1 13 HELIX 8 8 THR B 94 ILE B 109 1 16 HELIX 9 9 HIS B 122 GLY B 127 1 6 HELIX 10 10 GLY B 128 ALA B 135 1 8 HELIX 11 11 ALA B 143 ALA B 149 1 7 HELIX 12 12 GLU B 170 ALA B 174 5 5 HELIX 13 13 HIS B 228 PHE B 240 1 13 HELIX 14 14 ARG B 256 LYS B 268 1 13 SHEET 1 A 7 VAL A 50 ALA A 55 0 SHEET 2 A 7 VAL A 58 TYR A 64 -1 O VAL A 58 N LEU A 54 SHEET 3 A 7 ALA A 74 ASP A 82 -1 O ILE A 79 N TRP A 59 SHEET 4 A 7 ARG A 85 VAL A 89 -1 O VAL A 89 N LEU A 78 SHEET 5 A 7 VAL A 113 VAL A 118 1 O ALA A 114 N VAL A 86 SHEET 6 A 7 ALA A 138 ASN A 142 1 O TYR A 140 N VAL A 118 SHEET 7 A 7 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 B 4 LEU A 180 PHE A 183 0 SHEET 2 B 4 THR A 195 ILE A 198 -1 O THR A 195 N PHE A 183 SHEET 3 B 4 ILE A 203 GLY A 207 -1 O PHE A 205 N VAL A 196 SHEET 4 B 4 MET A 245 MET A 248 1 O VAL A 247 N ALA A 204 SHEET 1 C 7 VAL B 50 ALA B 55 0 SHEET 2 C 7 VAL B 58 MET B 67 -1 O GLN B 60 N ARG B 52 SHEET 3 C 7 GLY B 71 ASP B 82 -1 O VAL B 73 N LEU B 65 SHEET 4 C 7 ARG B 85 VAL B 89 -1 O VAL B 89 N LEU B 78 SHEET 5 C 7 VAL B 113 VAL B 118 1 O ALA B 114 N VAL B 86 SHEET 6 C 7 ALA B 138 ASN B 142 1 O TYR B 140 N VAL B 118 SHEET 7 C 7 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141 SHEET 1 D 4 LEU B 180 PHE B 183 0 SHEET 2 D 4 THR B 195 ILE B 198 -1 O GLY B 197 N LYS B 181 SHEET 3 D 4 ILE B 203 PHE B 205 -1 O PHE B 205 N VAL B 196 SHEET 4 D 4 MET B 245 VAL B 247 1 O VAL B 247 N ALA B 204 SITE 1 AC1 3 ARG A 234 ARG A 264 HOH A 365 SITE 1 AC2 5 LYS A 211 ASP A 212 MET A 248 HIS A 250 SITE 2 AC2 5 SER A 251 SITE 1 AC3 6 ASN A 166 TRP A 168 PHE A 183 ALA A 235 SITE 2 AC3 6 ALA A 239 HOH A 319 SITE 1 AC4 8 HIS B 120 HIS B 122 ASP B 124 LYS B 125 SITE 2 AC4 8 CYS B 208 SER B 249 HIS B 250 HOH B 362 SITE 1 AC5 3 ARG B 234 ARG B 264 HOH B 315 SITE 1 AC6 6 ASP B 212 MET B 248 SER B 249 HIS B 250 SITE 2 AC6 6 SER B 251 HOH B 288 CRYST1 59.712 51.113 70.680 90.00 106.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016747 0.000000 0.005107 0.00000 SCALE2 0.000000 0.019564 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014792 0.00000