HEADER MEMBRANE PROTEIN/SIGNALING PROTEIN 19-APR-11 3RL8 TITLE CRYSTAL STRUCTURE OF HDLG1-PDZ2 COMPLEXED WITH APC COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISKS LARGE HOMOLOG 1; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: UNP RESIDUES 315-410; COMPND 5 SYNONYM: SYNAPSE-ASSOCIATED PROTEIN 97, SAP-97, SAP97, HDLG; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 11-MER PEPTIDE FROM ADENOMATOUS POLYPOSIS COLI PROTEIN; COMPND 9 CHAIN: F; COMPND 10 SYNONYM: APC-C11; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DLG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS PDZ-LIGAND COMPLEX, MEMBRANE PROTEIN-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,H.LI,G.WU REVDAT 3 01-NOV-23 3RL8 1 SEQADV REVDAT 2 21-DEC-16 3RL8 1 TITLE REVDAT 1 14-DEC-11 3RL8 0 JRNL AUTH Z.ZHANG,H.LI,L.CHEN,X.LU,J.ZHANG,P.XU,K.LIN,G.WU JRNL TITL MOLECULAR BASIS FOR THE RECOGNITION OF ADENOMATOUS POLYPOSIS JRNL TITL 2 COLI BY THE DISCS LARGE 1 PROTEIN. JRNL REF PLOS ONE V. 6 23507 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21858148 JRNL DOI 10.1371/JOURNAL.PONE.0023507 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2108 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.51000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : 2.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.851 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3576 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4819 ; 1.306 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 5.954 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;40.406 ;26.905 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 675 ;15.885 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 569 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2552 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2312 ; 0.449 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3714 ; 0.842 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1264 ; 1.508 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1103 ; 2.529 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 317 A 405 4 REMARK 3 1 B 317 B 405 4 REMARK 3 1 C 317 C 405 4 REMARK 3 1 D 317 D 405 4 REMARK 3 1 E 317 E 405 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 653 ; 0.570 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 653 ; 0.550 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 653 ; 0.750 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 653 ; 0.450 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 E (A): 653 ; 0.370 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 653 ; 1.000 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 653 ; 0.960 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 653 ; 0.790 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 653 ; 0.620 ; 2.000 REMARK 3 MEDIUM THERMAL 1 E (A**2): 653 ; 0.520 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 409 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4883 5.4581 42.0125 REMARK 3 T TENSOR REMARK 3 T11: 0.1693 T22: 0.0260 REMARK 3 T33: 0.1462 T12: -0.0048 REMARK 3 T13: -0.0487 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 8.0496 L22: 3.2562 REMARK 3 L33: 1.6170 L12: -0.6752 REMARK 3 L13: -1.1211 L23: -0.0178 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: 0.2372 S13: -0.1639 REMARK 3 S21: -0.2210 S22: 0.0673 S23: 0.2234 REMARK 3 S31: 0.2861 S32: 0.0381 S33: -0.0470 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 316 B 405 REMARK 3 ORIGIN FOR THE GROUP (A): 52.0523 6.0989 41.1407 REMARK 3 T TENSOR REMARK 3 T11: 0.1177 T22: 0.0206 REMARK 3 T33: 0.1418 T12: 0.0181 REMARK 3 T13: -0.0063 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 11.3171 L22: 4.4867 REMARK 3 L33: 1.2439 L12: 1.4452 REMARK 3 L13: 1.6766 L23: 0.3877 REMARK 3 S TENSOR REMARK 3 S11: -0.0882 S12: 0.3217 S13: 0.3777 REMARK 3 S21: 0.0684 S22: 0.0426 S23: -0.2013 REMARK 3 S31: -0.2369 S32: -0.0518 S33: 0.0457 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 316 C 410 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2410 8.7956 63.8628 REMARK 3 T TENSOR REMARK 3 T11: 0.1804 T22: 0.2566 REMARK 3 T33: 0.1221 T12: -0.0156 REMARK 3 T13: 0.0185 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.2474 L22: 2.6480 REMARK 3 L33: 5.6620 L12: -0.0316 REMARK 3 L13: 1.5558 L23: -0.0373 REMARK 3 S TENSOR REMARK 3 S11: 0.0438 S12: -0.6426 S13: -0.1395 REMARK 3 S21: 0.1881 S22: 0.0046 S23: 0.1983 REMARK 3 S31: 0.1636 S32: -0.4782 S33: -0.0484 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 316 D 409 REMARK 3 ORIGIN FOR THE GROUP (A): 44.0424 20.1692 79.7109 REMARK 3 T TENSOR REMARK 3 T11: 0.1507 T22: 0.3888 REMARK 3 T33: 0.1554 T12: 0.0221 REMARK 3 T13: -0.0051 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 12.0597 L22: 4.0904 REMARK 3 L33: 3.9069 L12: 0.9363 REMARK 3 L13: 2.2009 L23: 1.5415 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: -0.9700 S13: 0.3414 REMARK 3 S21: 0.1897 S22: -0.1347 S23: -0.1176 REMARK 3 S31: -0.0119 S32: -0.0352 S33: 0.1232 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 316 E 405 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1057 20.7229 79.1349 REMARK 3 T TENSOR REMARK 3 T11: 0.2144 T22: 0.4815 REMARK 3 T33: 0.3167 T12: 0.0145 REMARK 3 T13: 0.0204 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 19.4618 L22: 1.5905 REMARK 3 L33: 4.6954 L12: 1.2878 REMARK 3 L13: -2.6299 L23: 0.1915 REMARK 3 S TENSOR REMARK 3 S11: -0.0960 S12: -0.0081 S13: 0.7736 REMARK 3 S21: -0.1065 S22: 0.2362 S23: 0.3158 REMARK 3 S31: 0.1088 S32: 0.0045 S33: -0.1402 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 2838 F 2843 REMARK 3 ORIGIN FOR THE GROUP (A): 57.1838 -4.0696 48.9956 REMARK 3 T TENSOR REMARK 3 T11: 0.3883 T22: 0.2755 REMARK 3 T33: 0.3986 T12: 0.0947 REMARK 3 T13: -0.1830 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 46.3981 L22: 50.4297 REMARK 3 L33: 32.8998 L12: -33.7563 REMARK 3 L13: 17.2550 L23: -0.2484 REMARK 3 S TENSOR REMARK 3 S11: -0.6677 S12: -0.6898 S13: -1.1980 REMARK 3 S21: 2.8535 S22: 1.5932 S23: -1.6130 REMARK 3 S31: 1.4764 S32: 1.8893 S33: -0.9255 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5764 10.3953 55.8690 REMARK 3 T TENSOR REMARK 3 T11: 0.3355 T22: 0.2545 REMARK 3 T33: 0.3235 T12: 0.0127 REMARK 3 T13: -0.0131 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.3384 L22: 0.2511 REMARK 3 L33: 0.3011 L12: 0.0411 REMARK 3 L13: -0.1060 L23: 0.0232 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.3100 S13: 0.0105 REMARK 3 S21: 0.0264 S22: -0.0271 S23: 0.0087 REMARK 3 S31: -0.0142 S32: -0.0245 S33: 0.0297 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3RL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30730 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 85.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZOK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M NA2HPO4, 0.9M KH2PO4, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.25100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 306 REMARK 465 GLY A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 MET A 314 REMARK 465 GLU A 315 REMARK 465 MET A 410 REMARK 465 MET B 306 REMARK 465 GLY B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 465 HIS B 313 REMARK 465 MET B 314 REMARK 465 GLU B 315 REMARK 465 THR B 406 REMARK 465 SER B 407 REMARK 465 MET B 408 REMARK 465 TYR B 409 REMARK 465 MET B 410 REMARK 465 MET C 306 REMARK 465 GLY C 307 REMARK 465 HIS C 308 REMARK 465 HIS C 309 REMARK 465 HIS C 310 REMARK 465 HIS C 311 REMARK 465 HIS C 312 REMARK 465 HIS C 313 REMARK 465 MET C 314 REMARK 465 GLU C 315 REMARK 465 MET D 306 REMARK 465 GLY D 307 REMARK 465 HIS D 308 REMARK 465 HIS D 309 REMARK 465 HIS D 310 REMARK 465 HIS D 311 REMARK 465 HIS D 312 REMARK 465 HIS D 313 REMARK 465 MET D 314 REMARK 465 GLU D 315 REMARK 465 MET D 410 REMARK 465 MET E 306 REMARK 465 GLY E 307 REMARK 465 HIS E 308 REMARK 465 HIS E 309 REMARK 465 HIS E 310 REMARK 465 HIS E 311 REMARK 465 HIS E 312 REMARK 465 HIS E 313 REMARK 465 MET E 314 REMARK 465 GLU E 315 REMARK 465 THR E 406 REMARK 465 SER E 407 REMARK 465 MET E 408 REMARK 465 TYR E 409 REMARK 465 MET E 410 REMARK 465 ARG F 2833 REMARK 465 HIS F 2834 REMARK 465 SER F 2835 REMARK 465 GLY F 2836 REMARK 465 SER F 2837 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET C 410 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 339 56.83 -143.85 REMARK 500 ASN A 375 -127.02 49.84 REMARK 500 ASN A 393 41.99 -79.16 REMARK 500 SER A 395 -149.27 -103.59 REMARK 500 ASN B 339 49.43 -151.57 REMARK 500 ASN C 339 47.23 -144.26 REMARK 500 TYR C 409 -8.52 82.09 REMARK 500 ASN D 339 51.14 -140.83 REMARK 500 ASN D 376 -6.14 74.59 REMARK 500 SER D 407 -154.70 -106.63 REMARK 500 ASN E 339 56.52 -141.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RL7 RELATED DB: PDB DBREF 3RL8 A 315 410 UNP Q12959 DLG1_HUMAN 315 410 DBREF 3RL8 B 315 410 UNP Q12959 DLG1_HUMAN 315 410 DBREF 3RL8 C 315 410 UNP Q12959 DLG1_HUMAN 315 410 DBREF 3RL8 D 315 410 UNP Q12959 DLG1_HUMAN 315 410 DBREF 3RL8 E 315 410 UNP Q12959 DLG1_HUMAN 315 410 DBREF 3RL8 F 2833 2843 UNP P25054 APC_HUMAN 2833 2843 SEQADV 3RL8 MET A 306 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 GLY A 307 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS A 308 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS A 309 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS A 310 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS A 311 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS A 312 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS A 313 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 MET A 314 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 MET B 306 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 GLY B 307 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS B 308 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS B 309 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS B 310 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS B 311 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS B 312 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS B 313 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 MET B 314 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 MET C 306 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 GLY C 307 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS C 308 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS C 309 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS C 310 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS C 311 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS C 312 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS C 313 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 MET C 314 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 MET D 306 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 GLY D 307 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS D 308 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS D 309 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS D 310 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS D 311 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS D 312 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS D 313 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 MET D 314 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 MET E 306 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 GLY E 307 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS E 308 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS E 309 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS E 310 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS E 311 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS E 312 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 HIS E 313 UNP Q12959 EXPRESSION TAG SEQADV 3RL8 MET E 314 UNP Q12959 EXPRESSION TAG SEQRES 1 A 105 MET GLY HIS HIS HIS HIS HIS HIS MET GLU LYS ILE MET SEQRES 2 A 105 GLU ILE LYS LEU ILE LYS GLY PRO LYS GLY LEU GLY PHE SEQRES 3 A 105 SER ILE ALA GLY GLY VAL GLY ASN GLN HIS ILE PRO GLY SEQRES 4 A 105 ASP ASN SER ILE TYR VAL THR LYS ILE ILE GLU GLY GLY SEQRES 5 A 105 ALA ALA HIS LYS ASP GLY LYS LEU GLN ILE GLY ASP LYS SEQRES 6 A 105 LEU LEU ALA VAL ASN ASN VAL CYS LEU GLU GLU VAL THR SEQRES 7 A 105 HIS GLU GLU ALA VAL THR ALA LEU LYS ASN THR SER ASP SEQRES 8 A 105 PHE VAL TYR LEU LYS VAL ALA LYS PRO THR SER MET TYR SEQRES 9 A 105 MET SEQRES 1 B 105 MET GLY HIS HIS HIS HIS HIS HIS MET GLU LYS ILE MET SEQRES 2 B 105 GLU ILE LYS LEU ILE LYS GLY PRO LYS GLY LEU GLY PHE SEQRES 3 B 105 SER ILE ALA GLY GLY VAL GLY ASN GLN HIS ILE PRO GLY SEQRES 4 B 105 ASP ASN SER ILE TYR VAL THR LYS ILE ILE GLU GLY GLY SEQRES 5 B 105 ALA ALA HIS LYS ASP GLY LYS LEU GLN ILE GLY ASP LYS SEQRES 6 B 105 LEU LEU ALA VAL ASN ASN VAL CYS LEU GLU GLU VAL THR SEQRES 7 B 105 HIS GLU GLU ALA VAL THR ALA LEU LYS ASN THR SER ASP SEQRES 8 B 105 PHE VAL TYR LEU LYS VAL ALA LYS PRO THR SER MET TYR SEQRES 9 B 105 MET SEQRES 1 C 105 MET GLY HIS HIS HIS HIS HIS HIS MET GLU LYS ILE MET SEQRES 2 C 105 GLU ILE LYS LEU ILE LYS GLY PRO LYS GLY LEU GLY PHE SEQRES 3 C 105 SER ILE ALA GLY GLY VAL GLY ASN GLN HIS ILE PRO GLY SEQRES 4 C 105 ASP ASN SER ILE TYR VAL THR LYS ILE ILE GLU GLY GLY SEQRES 5 C 105 ALA ALA HIS LYS ASP GLY LYS LEU GLN ILE GLY ASP LYS SEQRES 6 C 105 LEU LEU ALA VAL ASN ASN VAL CYS LEU GLU GLU VAL THR SEQRES 7 C 105 HIS GLU GLU ALA VAL THR ALA LEU LYS ASN THR SER ASP SEQRES 8 C 105 PHE VAL TYR LEU LYS VAL ALA LYS PRO THR SER MET TYR SEQRES 9 C 105 MET SEQRES 1 D 105 MET GLY HIS HIS HIS HIS HIS HIS MET GLU LYS ILE MET SEQRES 2 D 105 GLU ILE LYS LEU ILE LYS GLY PRO LYS GLY LEU GLY PHE SEQRES 3 D 105 SER ILE ALA GLY GLY VAL GLY ASN GLN HIS ILE PRO GLY SEQRES 4 D 105 ASP ASN SER ILE TYR VAL THR LYS ILE ILE GLU GLY GLY SEQRES 5 D 105 ALA ALA HIS LYS ASP GLY LYS LEU GLN ILE GLY ASP LYS SEQRES 6 D 105 LEU LEU ALA VAL ASN ASN VAL CYS LEU GLU GLU VAL THR SEQRES 7 D 105 HIS GLU GLU ALA VAL THR ALA LEU LYS ASN THR SER ASP SEQRES 8 D 105 PHE VAL TYR LEU LYS VAL ALA LYS PRO THR SER MET TYR SEQRES 9 D 105 MET SEQRES 1 E 105 MET GLY HIS HIS HIS HIS HIS HIS MET GLU LYS ILE MET SEQRES 2 E 105 GLU ILE LYS LEU ILE LYS GLY PRO LYS GLY LEU GLY PHE SEQRES 3 E 105 SER ILE ALA GLY GLY VAL GLY ASN GLN HIS ILE PRO GLY SEQRES 4 E 105 ASP ASN SER ILE TYR VAL THR LYS ILE ILE GLU GLY GLY SEQRES 5 E 105 ALA ALA HIS LYS ASP GLY LYS LEU GLN ILE GLY ASP LYS SEQRES 6 E 105 LEU LEU ALA VAL ASN ASN VAL CYS LEU GLU GLU VAL THR SEQRES 7 E 105 HIS GLU GLU ALA VAL THR ALA LEU LYS ASN THR SER ASP SEQRES 8 E 105 PHE VAL TYR LEU LYS VAL ALA LYS PRO THR SER MET TYR SEQRES 9 E 105 MET SEQRES 1 F 11 ARG HIS SER GLY SER TYR LEU VAL THR SER VAL FORMUL 7 HOH *286(H2 O) HELIX 1 1 GLY A 357 GLY A 363 1 7 HELIX 2 2 THR A 383 ASN A 393 1 11 HELIX 3 3 GLY B 357 GLY B 363 1 7 HELIX 4 4 THR B 383 ASN B 393 1 11 HELIX 5 5 GLY C 357 GLY C 363 1 7 HELIX 6 6 THR C 383 ASN C 393 1 11 HELIX 7 7 GLY D 357 GLY D 363 1 7 HELIX 8 8 THR D 383 ASN D 393 1 11 HELIX 9 9 GLY E 357 GLY E 363 1 7 HELIX 10 10 THR E 383 ASN E 393 1 11 SHEET 1 A 5 ILE A 317 ILE A 323 0 SHEET 2 A 5 PHE A 397 ALA A 403 -1 O LEU A 400 N ILE A 320 SHEET 3 A 5 LYS A 370 VAL A 374 -1 N LYS A 370 O ALA A 403 SHEET 4 A 5 ILE A 348 ILE A 353 -1 N ILE A 348 O LEU A 371 SHEET 5 A 5 PHE A 331 GLY A 335 -1 N ALA A 334 O TYR A 349 SHEET 1 B 4 ILE A 317 ILE A 323 0 SHEET 2 B 4 PHE A 397 ALA A 403 -1 O LEU A 400 N ILE A 320 SHEET 3 B 4 LYS A 370 VAL A 374 -1 N LYS A 370 O ALA A 403 SHEET 4 B 4 VAL A 377 CYS A 378 -1 O VAL A 377 N VAL A 374 SHEET 1 C 5 ILE B 317 ILE B 323 0 SHEET 2 C 5 PHE B 397 ALA B 403 -1 O LEU B 400 N ILE B 320 SHEET 3 C 5 LYS B 370 VAL B 374 -1 N LEU B 372 O LYS B 401 SHEET 4 C 5 ILE B 348 ILE B 353 -1 N ILE B 348 O LEU B 371 SHEET 5 C 5 PHE B 331 GLY B 335 -1 N ALA B 334 O TYR B 349 SHEET 1 D 4 ILE B 317 ILE B 323 0 SHEET 2 D 4 PHE B 397 ALA B 403 -1 O LEU B 400 N ILE B 320 SHEET 3 D 4 LYS B 370 VAL B 374 -1 N LEU B 372 O LYS B 401 SHEET 4 D 4 VAL B 377 CYS B 378 -1 O VAL B 377 N VAL B 374 SHEET 1 E 5 ILE C 317 ILE C 323 0 SHEET 2 E 5 PHE C 397 ALA C 403 -1 O VAL C 402 N MET C 318 SHEET 3 E 5 LYS C 370 VAL C 374 -1 N LEU C 372 O LYS C 401 SHEET 4 E 5 ILE C 348 ILE C 353 -1 N ILE C 348 O LEU C 371 SHEET 5 E 5 PHE C 331 GLY C 335 -1 N ALA C 334 O TYR C 349 SHEET 1 F 4 ILE C 317 ILE C 323 0 SHEET 2 F 4 PHE C 397 ALA C 403 -1 O VAL C 402 N MET C 318 SHEET 3 F 4 LYS C 370 VAL C 374 -1 N LEU C 372 O LYS C 401 SHEET 4 F 4 VAL C 377 CYS C 378 -1 O VAL C 377 N VAL C 374 SHEET 1 G 5 ILE D 317 ILE D 323 0 SHEET 2 G 5 PHE D 397 ALA D 403 -1 O LEU D 400 N ILE D 320 SHEET 3 G 5 LYS D 370 VAL D 374 -1 N LEU D 372 O LYS D 401 SHEET 4 G 5 ILE D 348 ILE D 353 -1 N ILE D 348 O LEU D 371 SHEET 5 G 5 PHE D 331 GLY D 335 -1 N ALA D 334 O TYR D 349 SHEET 1 H 4 ILE D 317 ILE D 323 0 SHEET 2 H 4 PHE D 397 ALA D 403 -1 O LEU D 400 N ILE D 320 SHEET 3 H 4 LYS D 370 VAL D 374 -1 N LEU D 372 O LYS D 401 SHEET 4 H 4 VAL D 377 CYS D 378 -1 O VAL D 377 N VAL D 374 SHEET 1 I 5 ILE E 317 ILE E 323 0 SHEET 2 I 5 PHE E 397 ALA E 403 -1 O LEU E 400 N ILE E 320 SHEET 3 I 5 LYS E 370 VAL E 374 -1 N LEU E 372 O LYS E 401 SHEET 4 I 5 ILE E 348 ILE E 353 -1 N ILE E 348 O LEU E 371 SHEET 5 I 5 PHE E 331 GLY E 335 -1 N ALA E 334 O TYR E 349 SHEET 1 J 4 ILE E 317 ILE E 323 0 SHEET 2 J 4 PHE E 397 ALA E 403 -1 O LEU E 400 N ILE E 320 SHEET 3 J 4 LYS E 370 VAL E 374 -1 N LEU E 372 O LYS E 401 SHEET 4 J 4 VAL E 377 CYS E 378 -1 O VAL E 377 N VAL E 374 CRYST1 67.806 52.502 87.426 90.00 102.42 90.00 P 1 21 1 10 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014748 0.000000 0.003247 0.00000 SCALE2 0.000000 0.019047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011712 0.00000