HEADER HYDROLASE/HYDROLASE INHIBITOR 26-APR-11 3ROQ TITLE CRYSTAL STRUCTURE OF HUMAN CD38 IN COMPLEX WITH COMPOUND CZ-46 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYL CYCLASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ECTODOMAIN (UNP RESIDUES 45-296); COMPND 5 SYNONYM: CYCLIC ADP-RIBOSE HYDROLASE 1, CADPR HYDROLASE 1, T10; COMPND 6 EC: 3.2.2.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD38; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZALPHA KEYWDS CD38, ADP-RIBOSYL CYCLASE, CYCLIC ADP-RIBOSE, CALCIUM SIGNALING, KEYWDS 2 INHIBITORY COMPOUND, COVALENT INTERMEDIATE, CZ-46, HYDROLASE- KEYWDS 3 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,H.C.LEE,Q.HAO REVDAT 5 01-NOV-23 3ROQ 1 REMARK REVDAT 4 29-JUL-20 3ROQ 1 REMARK SEQADV LINK SITE REVDAT 3 08-NOV-17 3ROQ 1 REMARK REVDAT 2 03-JUL-13 3ROQ 1 JRNL HETNAM FORMUL HETATM REVDAT 2 2 1 HETSYN REVDAT 1 21-DEC-11 3ROQ 0 JRNL AUTH A.K.KWONG,Z.CHEN,H.ZHANG,F.P.LEUNG,C.M.LAM,K.Y.TING,L.ZHANG, JRNL AUTH 2 Q.HAO,L.H.ZHANG,H.C.LEE JRNL TITL CATALYSIS-BASED INHIBITORS OF THE CALCIUM SIGNALING FUNCTION JRNL TITL 2 OF CD38. JRNL REF BIOCHEMISTRY V. 51 555 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22142305 JRNL DOI 10.1021/BI201509F REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 29217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1482 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4062 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.59000 REMARK 3 B22 (A**2) : 3.24000 REMARK 3 B33 (A**2) : 3.97000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 3.95000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.227 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.183 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.067 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4230 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5743 ; 1.199 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 503 ; 5.326 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;36.105 ;24.314 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 730 ;14.154 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.152 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 621 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3192 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2517 ; 0.385 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4105 ; 0.720 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1713 ; 1.343 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1636 ; 2.043 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 70 REMARK 3 ORIGIN FOR THE GROUP (A):-389.7630-918.4400 13.9030 REMARK 3 T TENSOR REMARK 3 T11: 0.2753 T22: 0.1498 REMARK 3 T33: 0.1311 T12: -0.0013 REMARK 3 T13: 0.0104 T23: -0.1154 REMARK 3 L TENSOR REMARK 3 L11: 2.2050 L22: 3.5277 REMARK 3 L33: 8.1272 L12: -0.4410 REMARK 3 L13: 0.5028 L23: -3.8257 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: -0.1704 S13: 0.2022 REMARK 3 S21: 0.0365 S22: -0.0838 S23: -0.1725 REMARK 3 S31: -0.1352 S32: 0.4218 S33: 0.1393 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 115 REMARK 3 ORIGIN FOR THE GROUP (A):-399.8070-912.8200 4.6010 REMARK 3 T TENSOR REMARK 3 T11: 0.3409 T22: 0.1403 REMARK 3 T33: 0.2367 T12: 0.0265 REMARK 3 T13: 0.0229 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 3.3125 L22: 2.9722 REMARK 3 L33: 8.3150 L12: 1.6035 REMARK 3 L13: -1.9870 L23: -3.5745 REMARK 3 S TENSOR REMARK 3 S11: -0.0902 S12: 0.3407 S13: 0.5403 REMARK 3 S21: -0.1024 S22: 0.0280 S23: -0.0018 REMARK 3 S31: -0.3300 S32: -0.1863 S33: 0.0623 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 140 REMARK 3 ORIGIN FOR THE GROUP (A):-392.4450-928.9990 -8.2380 REMARK 3 T TENSOR REMARK 3 T11: 0.3820 T22: 0.2047 REMARK 3 T33: 0.1632 T12: -0.0195 REMARK 3 T13: 0.0334 T23: -0.1139 REMARK 3 L TENSOR REMARK 3 L11: 6.3698 L22: 1.6241 REMARK 3 L33: 7.7491 L12: -0.7584 REMARK 3 L13: 1.6801 L23: -0.5824 REMARK 3 S TENSOR REMARK 3 S11: -0.1025 S12: 0.0623 S13: 0.1703 REMARK 3 S21: -0.0886 S22: 0.0113 S23: -0.3686 REMARK 3 S31: 0.0187 S32: 0.5572 S33: 0.0912 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 193 REMARK 3 ORIGIN FOR THE GROUP (A):-397.2500-922.3630 9.6580 REMARK 3 T TENSOR REMARK 3 T11: 0.2723 T22: 0.0908 REMARK 3 T33: 0.1536 T12: 0.0285 REMARK 3 T13: 0.0373 T23: -0.0970 REMARK 3 L TENSOR REMARK 3 L11: 3.2210 L22: 0.9405 REMARK 3 L33: 6.0397 L12: 0.5019 REMARK 3 L13: 0.3087 L23: -1.1664 REMARK 3 S TENSOR REMARK 3 S11: -0.0647 S12: 0.0160 S13: 0.0030 REMARK 3 S21: -0.0663 S22: -0.0192 S23: 0.1336 REMARK 3 S31: 0.1029 S32: 0.0212 S33: 0.0839 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 268 REMARK 3 ORIGIN FOR THE GROUP (A):-401.5920-938.6550 -6.1650 REMARK 3 T TENSOR REMARK 3 T11: 0.4806 T22: 0.2392 REMARK 3 T33: 0.1485 T12: -0.0503 REMARK 3 T13: 0.0289 T23: -0.1193 REMARK 3 L TENSOR REMARK 3 L11: 4.6416 L22: 4.4403 REMARK 3 L33: 2.6929 L12: -0.7696 REMARK 3 L13: -0.2999 L23: -1.0328 REMARK 3 S TENSOR REMARK 3 S11: -0.1538 S12: -0.1731 S13: -0.4835 REMARK 3 S21: 0.2564 S22: 0.0542 S23: 0.0975 REMARK 3 S31: 0.3694 S32: -0.1889 S33: 0.0996 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 296 REMARK 3 ORIGIN FOR THE GROUP (A):-389.6940-939.3990 -14.7240 REMARK 3 T TENSOR REMARK 3 T11: 0.5980 T22: 0.3611 REMARK 3 T33: 0.3302 T12: 0.0230 REMARK 3 T13: 0.1343 T23: -0.1499 REMARK 3 L TENSOR REMARK 3 L11: 5.4067 L22: 4.3567 REMARK 3 L33: 4.4118 L12: 0.8318 REMARK 3 L13: -0.2796 L23: 0.9463 REMARK 3 S TENSOR REMARK 3 S11: -0.5172 S12: 0.8435 S13: -0.8855 REMARK 3 S21: -0.3124 S22: 0.2439 S23: -0.8055 REMARK 3 S31: 0.5365 S32: 0.4764 S33: 0.2733 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 123 REMARK 3 ORIGIN FOR THE GROUP (A):-414.4540-947.9820 24.9390 REMARK 3 T TENSOR REMARK 3 T11: 0.3598 T22: 0.1894 REMARK 3 T33: 0.3224 T12: -0.0077 REMARK 3 T13: -0.0466 T23: -0.1481 REMARK 3 L TENSOR REMARK 3 L11: 5.5208 L22: 3.2554 REMARK 3 L33: 0.7411 L12: -2.2195 REMARK 3 L13: 0.4946 L23: -0.6589 REMARK 3 S TENSOR REMARK 3 S11: 0.2963 S12: 0.2114 S13: -1.0394 REMARK 3 S21: -0.2322 S22: -0.0833 S23: 0.3201 REMARK 3 S31: 0.1810 S32: -0.0521 S33: -0.2130 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 124 B 144 REMARK 3 ORIGIN FOR THE GROUP (A):-424.1500-933.2180 34.4440 REMARK 3 T TENSOR REMARK 3 T11: 0.4410 T22: 0.2557 REMARK 3 T33: 0.1891 T12: 0.0051 REMARK 3 T13: 0.0617 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 19.0700 L22: 17.3179 REMARK 3 L33: 5.4671 L12: 11.4898 REMARK 3 L13: -8.5312 L23: -5.0223 REMARK 3 S TENSOR REMARK 3 S11: 0.1454 S12: -0.3488 S13: -0.6970 REMARK 3 S21: 0.9180 S22: -0.2561 S23: 0.5443 REMARK 3 S31: 0.1685 S32: -0.3362 S33: 0.1107 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 145 B 193 REMARK 3 ORIGIN FOR THE GROUP (A):-407.3330-945.0660 28.8080 REMARK 3 T TENSOR REMARK 3 T11: 0.3188 T22: 0.1601 REMARK 3 T33: 0.2267 T12: -0.0058 REMARK 3 T13: -0.0007 T23: -0.0780 REMARK 3 L TENSOR REMARK 3 L11: 11.2037 L22: 2.8267 REMARK 3 L33: 2.2207 L12: -2.1281 REMARK 3 L13: 1.7808 L23: -1.4797 REMARK 3 S TENSOR REMARK 3 S11: 0.2415 S12: -0.2694 S13: -0.8077 REMARK 3 S21: 0.0708 S22: -0.1541 S23: -0.1828 REMARK 3 S31: -0.1048 S32: 0.1509 S33: -0.0874 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 194 B 271 REMARK 3 ORIGIN FOR THE GROUP (A):-416.0890-922.0470 29.0760 REMARK 3 T TENSOR REMARK 3 T11: 0.3226 T22: 0.1505 REMARK 3 T33: 0.0878 T12: 0.0015 REMARK 3 T13: 0.0268 T23: -0.0960 REMARK 3 L TENSOR REMARK 3 L11: 2.9505 L22: 3.7534 REMARK 3 L33: 4.1634 L12: 0.5738 REMARK 3 L13: 0.1366 L23: 0.2735 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: -0.2078 S13: 0.1301 REMARK 3 S21: 0.2981 S22: -0.0194 S23: -0.2243 REMARK 3 S31: -0.0967 S32: 0.1893 S33: -0.0310 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 272 B 296 REMARK 3 ORIGIN FOR THE GROUP (A):-430.4400-922.6160 40.3860 REMARK 3 T TENSOR REMARK 3 T11: 0.5330 T22: 0.3601 REMARK 3 T33: 0.2324 T12: 0.0560 REMARK 3 T13: 0.0263 T23: -0.0801 REMARK 3 L TENSOR REMARK 3 L11: 29.4820 L22: 4.3206 REMARK 3 L33: 12.6219 L12: 9.4674 REMARK 3 L13: -18.8516 L23: -6.0798 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: -0.8401 S13: -0.3569 REMARK 3 S21: 0.4015 S22: -0.1519 S23: 0.2474 REMARK 3 S31: 0.2071 S32: 0.1947 S33: 0.2224 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 3ROQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37960 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YH3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH4.0, 0.2M REMARK 280 AMMONIUM ACETATE, 3% ISOPROPANOL, 15% PEG 10000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 43 REMARK 465 PHE A 44 REMARK 465 GLU B 43 REMARK 465 PHE B 44 REMARK 465 ARG B 247 REMARK 465 GLU B 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 45 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 78 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 226 O4 46Z B 301 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 98 8.91 -69.78 REMARK 500 ASP A 179 -77.27 -103.55 REMARK 500 ASN A 182 55.24 -92.54 REMARK 500 ASP A 202 -116.85 60.33 REMARK 500 VAL A 225 -51.65 -122.88 REMARK 500 SER A 295 -21.16 -173.82 REMARK 500 PRO B 98 3.90 -68.96 REMARK 500 PRO B 118 108.04 -44.83 REMARK 500 ASN B 182 46.44 -82.96 REMARK 500 ASP B 202 -114.46 61.63 REMARK 500 VAL B 225 -60.71 -124.18 REMARK 500 ASN B 270 39.92 73.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE REAL LEAVING GROUP NICOTINAMIDE OF LIGAND 46Z CAN NOT BE SEEN REMARK 600 IN THE STRUCTURE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YH3 RELATED DB: PDB REMARK 900 NATIVE FORM REMARK 900 RELATED ID: 3ROK RELATED DB: PDB REMARK 900 RELATED ID: 3ROM RELATED DB: PDB REMARK 900 RELATED ID: 3ROP RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 Q -> T AT THIS POSITION IN GENBANK AAA68482 DBREF 3ROQ A 45 296 UNP P28907 CD38_HUMAN 45 296 DBREF 3ROQ B 45 296 UNP P28907 CD38_HUMAN 45 296 SEQADV 3ROQ GLU A 43 UNP P28907 EXPRESSION TAG SEQADV 3ROQ PHE A 44 UNP P28907 EXPRESSION TAG SEQADV 3ROQ THR A 49 UNP P28907 GLN 49 SEE REMARK 999 SEQADV 3ROQ ASP A 100 UNP P28907 ASN 100 ENGINEERED MUTATION SEQADV 3ROQ ASP A 164 UNP P28907 ASN 164 ENGINEERED MUTATION SEQADV 3ROQ ASP A 209 UNP P28907 ASN 209 ENGINEERED MUTATION SEQADV 3ROQ ASP A 219 UNP P28907 ASN 219 ENGINEERED MUTATION SEQADV 3ROQ GLU B 43 UNP P28907 EXPRESSION TAG SEQADV 3ROQ PHE B 44 UNP P28907 EXPRESSION TAG SEQADV 3ROQ THR B 49 UNP P28907 GLN 49 SEE REMARK 999 SEQADV 3ROQ ASP B 100 UNP P28907 ASN 100 ENGINEERED MUTATION SEQADV 3ROQ ASP B 164 UNP P28907 ASN 164 ENGINEERED MUTATION SEQADV 3ROQ ASP B 209 UNP P28907 ASN 209 ENGINEERED MUTATION SEQADV 3ROQ ASP B 219 UNP P28907 ASN 219 ENGINEERED MUTATION SEQRES 1 A 254 GLU PHE ARG TRP ARG GLN THR TRP SER GLY PRO GLY THR SEQRES 2 A 254 THR LYS ARG PHE PRO GLU THR VAL LEU ALA ARG CYS VAL SEQRES 3 A 254 LYS TYR THR GLU ILE HIS PRO GLU MET ARG HIS VAL ASP SEQRES 4 A 254 CYS GLN SER VAL TRP ASP ALA PHE LYS GLY ALA PHE ILE SEQRES 5 A 254 SER LYS HIS PRO CYS ASP ILE THR GLU GLU ASP TYR GLN SEQRES 6 A 254 PRO LEU MET LYS LEU GLY THR GLN THR VAL PRO CYS ASN SEQRES 7 A 254 LYS ILE LEU LEU TRP SER ARG ILE LYS ASP LEU ALA HIS SEQRES 8 A 254 GLN PHE THR GLN VAL GLN ARG ASP MET PHE THR LEU GLU SEQRES 9 A 254 ASP THR LEU LEU GLY TYR LEU ALA ASP ASP LEU THR TRP SEQRES 10 A 254 CYS GLY GLU PHE ASP THR SER LYS ILE ASN TYR GLN SER SEQRES 11 A 254 CYS PRO ASP TRP ARG LYS ASP CYS SER ASN ASN PRO VAL SEQRES 12 A 254 SER VAL PHE TRP LYS THR VAL SER ARG ARG PHE ALA GLU SEQRES 13 A 254 ALA ALA CYS ASP VAL VAL HIS VAL MET LEU ASP GLY SER SEQRES 14 A 254 ARG SER LYS ILE PHE ASP LYS ASP SER THR PHE GLY SER SEQRES 15 A 254 VAL GLU VAL HIS ASN LEU GLN PRO GLU LYS VAL GLN THR SEQRES 16 A 254 LEU GLU ALA TRP VAL ILE HIS GLY GLY ARG GLU ASP SER SEQRES 17 A 254 ARG ASP LEU CYS GLN ASP PRO THR ILE LYS GLU LEU GLU SEQRES 18 A 254 SER ILE ILE SER LYS ARG ASN ILE GLN PHE SER CYS LYS SEQRES 19 A 254 ASN ILE TYR ARG PRO ASP LYS PHE LEU GLN CYS VAL LYS SEQRES 20 A 254 ASN PRO GLU ASP SER SER CYS SEQRES 1 B 254 GLU PHE ARG TRP ARG GLN THR TRP SER GLY PRO GLY THR SEQRES 2 B 254 THR LYS ARG PHE PRO GLU THR VAL LEU ALA ARG CYS VAL SEQRES 3 B 254 LYS TYR THR GLU ILE HIS PRO GLU MET ARG HIS VAL ASP SEQRES 4 B 254 CYS GLN SER VAL TRP ASP ALA PHE LYS GLY ALA PHE ILE SEQRES 5 B 254 SER LYS HIS PRO CYS ASP ILE THR GLU GLU ASP TYR GLN SEQRES 6 B 254 PRO LEU MET LYS LEU GLY THR GLN THR VAL PRO CYS ASN SEQRES 7 B 254 LYS ILE LEU LEU TRP SER ARG ILE LYS ASP LEU ALA HIS SEQRES 8 B 254 GLN PHE THR GLN VAL GLN ARG ASP MET PHE THR LEU GLU SEQRES 9 B 254 ASP THR LEU LEU GLY TYR LEU ALA ASP ASP LEU THR TRP SEQRES 10 B 254 CYS GLY GLU PHE ASP THR SER LYS ILE ASN TYR GLN SER SEQRES 11 B 254 CYS PRO ASP TRP ARG LYS ASP CYS SER ASN ASN PRO VAL SEQRES 12 B 254 SER VAL PHE TRP LYS THR VAL SER ARG ARG PHE ALA GLU SEQRES 13 B 254 ALA ALA CYS ASP VAL VAL HIS VAL MET LEU ASP GLY SER SEQRES 14 B 254 ARG SER LYS ILE PHE ASP LYS ASP SER THR PHE GLY SER SEQRES 15 B 254 VAL GLU VAL HIS ASN LEU GLN PRO GLU LYS VAL GLN THR SEQRES 16 B 254 LEU GLU ALA TRP VAL ILE HIS GLY GLY ARG GLU ASP SER SEQRES 17 B 254 ARG ASP LEU CYS GLN ASP PRO THR ILE LYS GLU LEU GLU SEQRES 18 B 254 SER ILE ILE SER LYS ARG ASN ILE GLN PHE SER CYS LYS SEQRES 19 B 254 ASN ILE TYR ARG PRO ASP LYS PHE LEU GLN CYS VAL LYS SEQRES 20 B 254 ASN PRO GLU ASP SER SER CYS HET 46Z A 301 20 HET 46Z B 301 20 HETNAM 46Z (2R,3R,4S,5S)-4-FLUORO-3,5-DIHYDROXYTETRAHYDROFURAN-2- HETNAM 2 46Z YL 2-PHENYLETHYL HYDROGEN (S)-PHOSPHATE HETSYN 46Z INHIBITOR CZ-46 BASED ON ARABINOSYL-2-FLUORO-2- HETSYN 2 46Z DEOXYNICOTINAMIDE MONONUCLEOTIDE, BOUND FORM FORMUL 3 46Z 2(C12 H16 F O7 P) FORMUL 5 HOH *198(H2 O) HELIX 1 1 ARG A 58 HIS A 74 1 17 HELIX 2 2 PRO A 75 ARG A 78 5 4 HELIX 3 3 ASP A 81 ILE A 94 1 14 HELIX 4 4 THR A 102 ASP A 105 5 4 HELIX 5 5 TYR A 106 GLY A 113 1 8 HELIX 6 6 ILE A 128 GLN A 139 1 12 HELIX 7 7 THR A 144 ASP A 147 5 4 HELIX 8 8 THR A 148 ASP A 155 1 8 HELIX 9 9 ASN A 183 ALA A 200 1 18 HELIX 10 10 SER A 220 VAL A 225 1 6 HELIX 11 11 GLU A 226 LEU A 230 5 5 HELIX 12 12 ASP A 252 GLN A 255 5 4 HELIX 13 13 ASP A 256 ARG A 269 1 14 HELIX 14 14 ARG A 280 ASN A 290 1 11 HELIX 15 15 ARG B 58 HIS B 74 1 17 HELIX 16 16 PRO B 75 ARG B 78 5 4 HELIX 17 17 ASP B 81 ILE B 94 1 14 HELIX 18 18 THR B 102 ASP B 105 5 4 HELIX 19 19 TYR B 106 GLY B 113 1 8 HELIX 20 20 PRO B 118 LYS B 121 5 4 HELIX 21 21 ILE B 128 GLN B 139 1 12 HELIX 22 22 THR B 144 ASP B 147 5 4 HELIX 23 23 THR B 148 ASP B 155 1 8 HELIX 24 24 ASN B 183 ALA B 200 1 18 HELIX 25 25 SER B 220 VAL B 225 1 6 HELIX 26 26 ASP B 252 GLN B 255 5 4 HELIX 27 27 ASP B 256 LYS B 268 1 13 HELIX 28 28 ARG B 280 ASN B 290 1 11 SHEET 1 A 2 GLY A 52 PRO A 53 0 SHEET 2 A 2 SER A 172 CYS A 173 -1 O CYS A 173 N GLY A 52 SHEET 1 B 4 LEU A 123 SER A 126 0 SHEET 2 B 4 ASP A 202 ASP A 209 1 O HIS A 205 N LEU A 124 SHEET 3 B 4 VAL A 235 ILE A 243 1 O TRP A 241 N VAL A 206 SHEET 4 B 4 GLN A 272 ILE A 278 1 O LYS A 276 N ALA A 240 SHEET 1 C 2 GLY A 161 GLU A 162 0 SHEET 2 C 2 THR A 165 ILE A 168 -1 O THR A 165 N GLU A 162 SHEET 1 D 2 GLY B 52 PRO B 53 0 SHEET 2 D 2 SER B 172 CYS B 173 -1 O CYS B 173 N GLY B 52 SHEET 1 E 4 LEU B 123 SER B 126 0 SHEET 2 E 4 ASP B 202 ASP B 209 1 O HIS B 205 N LEU B 124 SHEET 3 E 4 VAL B 235 ILE B 243 1 O TRP B 241 N VAL B 206 SHEET 4 E 4 GLN B 272 ILE B 278 1 O LYS B 276 N ALA B 240 SSBOND 1 CYS A 67 CYS A 82 1555 1555 2.05 SSBOND 2 CYS A 99 CYS A 180 1555 1555 2.03 SSBOND 3 CYS A 119 CYS A 201 1555 1555 2.06 SSBOND 4 CYS A 160 CYS A 173 1555 1555 2.03 SSBOND 5 CYS A 254 CYS A 275 1555 1555 2.04 SSBOND 6 CYS A 287 CYS A 296 1555 1555 2.03 SSBOND 7 CYS B 67 CYS B 82 1555 1555 2.05 SSBOND 8 CYS B 99 CYS B 180 1555 1555 2.03 SSBOND 9 CYS B 119 CYS B 201 1555 1555 2.05 SSBOND 10 CYS B 160 CYS B 173 1555 1555 2.03 SSBOND 11 CYS B 254 CYS B 275 1555 1555 2.06 SSBOND 12 CYS B 287 CYS B 296 1555 1555 2.02 LINK OE2 GLU A 226 C1 46Z A 301 1555 1555 1.60 LINK OE2 GLU B 226 C1 46Z B 301 1555 1555 1.62 CRYST1 41.881 53.511 63.906 109.33 90.53 94.83 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023877 0.002016 0.000946 0.00000 SCALE2 0.000000 0.018754 0.006622 0.00000 SCALE3 0.000000 0.000000 0.016596 0.00000