HEADER LIGASE 26-APR-11 3RPG TITLE BMI1/RING1B-UBCH5C COMPLEX STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 D3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBIQUITIN CARRIER PROTEIN D3, UBIQUITIN-CONJUGATING ENZYME COMPND 5 E2(17)KB 3, UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 3, UBIQUITIN- COMPND 6 PROTEIN LIGASE D3; COMPND 7 EC: 6.3.2.19; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: POLYCOMB COMPLEX PROTEIN BMI-1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 1-109; COMPND 13 SYNONYM: POLYCOMB GROUP RING FINGER PROTEIN 4, RING FINGER PROTEIN COMPND 14 51; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RING2; COMPND 18 CHAIN: C; COMPND 19 FRAGMENT: UNP RESIDUES 1-116; COMPND 20 SYNONYM: HUNTINGTIN-INTERACTING PROTEIN 2-INTERACTING PROTEIN 3, COMPND 21 HIP2-INTERACTING PROTEIN 3, PROTEIN DING, RING FINGER PROTEIN 1B, COMPND 22 RING1B, RING FINGER PROTEIN 2, RING FINGER PROTEIN BAP-1; COMPND 23 EC: 6.3.2.-; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2D3, UBC5C, UBCH5C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BMI1, PCGF4, RNF51; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: RNF2, BAP1, DING, HIPI3, RING1B; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.L.BENTLEY,K.C.DONG,A.G.COCHRAN REVDAT 3 13-SEP-23 3RPG 1 REMARK SEQADV LINK REVDAT 2 31-AUG-11 3RPG 1 JRNL REVDAT 1 17-AUG-11 3RPG 0 JRNL AUTH M.L.BENTLEY,J.E.CORN,K.C.DONG,Q.PHUNG,T.K.CHEUNG,A.G.COCHRAN JRNL TITL RECOGNITION OF UBCH5C AND THE NUCLEOSOME BY THE BMI1/RING1B JRNL TITL 2 UBIQUITIN LIGASE COMPLEX. JRNL REF EMBO J. V. 30 3285 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21772249 JRNL DOI 10.1038/EMBOJ.2011.243 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8255 - 4.8095 1.00 2563 128 0.1889 0.2122 REMARK 3 2 4.8095 - 3.8188 0.99 2437 126 0.1765 0.1880 REMARK 3 3 3.8188 - 3.3365 1.00 2443 138 0.2168 0.2537 REMARK 3 4 3.3365 - 3.0316 0.99 2404 120 0.2501 0.2684 REMARK 3 5 3.0316 - 2.8144 1.00 2411 126 0.2843 0.3409 REMARK 3 6 2.8144 - 2.6485 1.00 2401 133 0.3092 0.3366 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 22.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28960 REMARK 3 B22 (A**2) : 0.28960 REMARK 3 B33 (A**2) : -0.57920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2858 REMARK 3 ANGLE : 0.900 3876 REMARK 3 CHIRALITY : 0.057 440 REMARK 3 PLANARITY : 0.004 492 REMARK 3 DIHEDRAL : 12.138 1093 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.649 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2H0D AND 2FUH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% MPD, 0.1 M MES PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.71467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.85733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.85733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.71467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 PRO B 102 REMARK 465 SER B 103 REMARK 465 ALA B 104 REMARK 465 ASP B 105 REMARK 465 ALA B 106 REMARK 465 ALA B 107 REMARK 465 ASN B 108 REMARK 465 GLY B 109 REMARK 465 LEU B 110 REMARK 465 GLU B 111 REMARK 465 HIS B 112 REMARK 465 HIS B 113 REMARK 465 HIS B 114 REMARK 465 HIS B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 GLY C -4 REMARK 465 PRO C -3 REMARK 465 LEU C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLN C 3 REMARK 465 ALA C 4 REMARK 465 VAL C 5 REMARK 465 GLN C 6 REMARK 465 THR C 7 REMARK 465 ASN C 8 REMARK 465 GLY C 9 REMARK 465 THR C 10 REMARK 465 GLN C 11 REMARK 465 PRO C 12 REMARK 465 LEU C 13 REMARK 465 SER C 14 REMARK 465 LYS C 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 20 -2.71 78.52 REMARK 500 ASP A 42 48.68 -88.03 REMARK 500 ARG A 90 -63.36 -130.71 REMARK 500 LEU B 35 32.75 72.48 REMARK 500 ASP B 72 78.75 -110.28 REMARK 500 ARG C 91 6.39 84.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 18 SG REMARK 620 2 CYS B 21 SG 114.3 REMARK 620 3 CYS B 39 SG 114.4 101.4 REMARK 620 4 CYS B 42 SG 112.1 106.8 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 34 SG REMARK 620 2 HIS B 36 ND1 106.1 REMARK 620 3 CYS B 53 SG 107.3 110.7 REMARK 620 4 CYS B 56 SG 106.7 111.0 114.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1116 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 51 SG REMARK 620 2 CYS C 54 SG 110.1 REMARK 620 3 CYS C 72 SG 101.9 106.3 REMARK 620 4 CYS C 75 SG 111.0 109.5 117.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1115 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 67 SG REMARK 620 2 HIS C 69 ND1 112.9 REMARK 620 3 CYS C 87 SG 120.9 110.6 REMARK 620 4 CYS C 90 SG 96.1 99.8 113.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1116 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H0D RELATED DB: PDB REMARK 900 RELATED ID: 2CKL RELATED DB: PDB REMARK 900 RELATED ID: 2FUH RELATED DB: PDB REMARK 900 RELATED ID: 1X23 RELATED DB: PDB DBREF 3RPG A 2 147 UNP P61077 UB2D3_HUMAN 2 147 DBREF 3RPG B 1 109 UNP P35226 BMI1_HUMAN 1 109 DBREF 3RPG C 1 116 UNP Q99496 RING2_HUMAN 1 116 SEQADV 3RPG LEU A -1 UNP P61077 EXPRESSION TAG SEQADV 3RPG GLY A 0 UNP P61077 EXPRESSION TAG SEQADV 3RPG SER A 1 UNP P61077 EXPRESSION TAG SEQADV 3RPG LEU B 110 UNP P35226 EXPRESSION TAG SEQADV 3RPG GLU B 111 UNP P35226 EXPRESSION TAG SEQADV 3RPG HIS B 112 UNP P35226 EXPRESSION TAG SEQADV 3RPG HIS B 113 UNP P35226 EXPRESSION TAG SEQADV 3RPG HIS B 114 UNP P35226 EXPRESSION TAG SEQADV 3RPG HIS B 115 UNP P35226 EXPRESSION TAG SEQADV 3RPG HIS B 116 UNP P35226 EXPRESSION TAG SEQADV 3RPG HIS B 117 UNP P35226 EXPRESSION TAG SEQADV 3RPG GLY C -4 UNP Q99496 EXPRESSION TAG SEQADV 3RPG PRO C -3 UNP Q99496 EXPRESSION TAG SEQADV 3RPG LEU C -2 UNP Q99496 EXPRESSION TAG SEQADV 3RPG GLY C -1 UNP Q99496 EXPRESSION TAG SEQADV 3RPG SER C 0 UNP Q99496 EXPRESSION TAG SEQRES 1 A 149 LEU GLY SER ALA LEU LYS ARG ILE ASN LYS GLU LEU SER SEQRES 2 A 149 ASP LEU ALA ARG ASP PRO PRO ALA GLN CYS SER ALA GLY SEQRES 3 A 149 PRO VAL GLY ASP ASP MET PHE HIS TRP GLN ALA THR ILE SEQRES 4 A 149 MET GLY PRO ASN ASP SER PRO TYR GLN GLY GLY VAL PHE SEQRES 5 A 149 PHE LEU THR ILE HIS PHE PRO THR ASP TYR PRO PHE LYS SEQRES 6 A 149 PRO PRO LYS VAL ALA PHE THR THR ARG ILE TYR HIS PRO SEQRES 7 A 149 ASN ILE ASN SER ASN GLY SER ILE CYS LEU ASP ILE LEU SEQRES 8 A 149 ARG SER GLN TRP SER PRO ALA LEU THR ILE SER LYS VAL SEQRES 9 A 149 LEU LEU SER ILE CYS SER LEU LEU CYS ASP PRO ASN PRO SEQRES 10 A 149 ASP ASP PRO LEU VAL PRO GLU ILE ALA ARG ILE TYR LYS SEQRES 11 A 149 THR ASP ARG ASP LYS TYR ASN ARG ILE SER ARG GLU TRP SEQRES 12 A 149 THR GLN LYS TYR ALA MET SEQRES 1 B 117 MET HIS ARG THR THR ARG ILE LYS ILE THR GLU LEU ASN SEQRES 2 B 117 PRO HIS LEU MET CYS VAL LEU CYS GLY GLY TYR PHE ILE SEQRES 3 B 117 ASP ALA THR THR ILE ILE GLU CYS LEU HIS SER PHE CYS SEQRES 4 B 117 LYS THR CYS ILE VAL ARG TYR LEU GLU THR SER LYS TYR SEQRES 5 B 117 CYS PRO ILE CYS ASP VAL GLN VAL HIS LYS THR ARG PRO SEQRES 6 B 117 LEU LEU ASN ILE ARG SER ASP LYS THR LEU GLN ASP ILE SEQRES 7 B 117 VAL TYR LYS LEU VAL PRO GLY LEU PHE LYS ASN GLU MET SEQRES 8 B 117 LYS ARG ARG ARG ASP PHE TYR ALA ALA HIS PRO SER ALA SEQRES 9 B 117 ASP ALA ALA ASN GLY LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 121 GLY PRO LEU GLY SER MET SER GLN ALA VAL GLN THR ASN SEQRES 2 C 121 GLY THR GLN PRO LEU SER LYS THR TRP GLU LEU SER LEU SEQRES 3 C 121 TYR GLU LEU GLN ARG THR PRO GLN GLU ALA ILE THR ASP SEQRES 4 C 121 GLY LEU GLU ILE VAL VAL SER PRO ARG SER LEU HIS SER SEQRES 5 C 121 GLU LEU MET CYS PRO ILE CYS LEU ASP MET LEU LYS ASN SEQRES 6 C 121 THR MET THR THR LYS GLU CYS LEU HIS ARG PHE CYS ALA SEQRES 7 C 121 ASP CYS ILE ILE THR ALA LEU ARG SER GLY ASN LYS GLU SEQRES 8 C 121 CYS PRO THR CYS ARG LYS LYS LEU VAL SER LYS ARG SER SEQRES 9 C 121 LEU ARG PRO ASP PRO ASN PHE ASP ALA LEU ILE SER LYS SEQRES 10 C 121 ILE TYR PRO SER HET ZN B1104 1 HET ZN B1105 1 HET ZN C1115 1 HET ZN C1116 1 HETNAM ZN ZINC ION FORMUL 4 ZN 4(ZN 2+) FORMUL 8 HOH *115(H2 O) HELIX 1 1 GLY A 0 ASP A 16 1 17 HELIX 2 2 LEU A 86 ARG A 90 5 5 HELIX 3 3 THR A 98 ASP A 112 1 15 HELIX 4 4 VAL A 120 ASP A 130 1 11 HELIX 5 5 ASP A 130 ALA A 146 1 17 HELIX 6 6 ILE B 9 MET B 17 1 9 HELIX 7 7 CYS B 39 LEU B 47 1 9 HELIX 8 8 ARG B 64 LEU B 67 5 4 HELIX 9 9 ASP B 72 VAL B 83 1 12 HELIX 10 10 GLY B 85 ALA B 100 1 16 HELIX 11 11 LEU C 45 MET C 50 1 6 HELIX 12 12 ALA C 73 SER C 82 1 10 HELIX 13 13 SER C 96 ARG C 98 5 3 HELIX 14 14 ASP C 103 TYR C 114 1 12 SHEET 1 A 4 CYS A 21 PRO A 25 0 SHEET 2 A 4 HIS A 32 MET A 38 -1 O GLN A 34 N GLY A 24 SHEET 3 A 4 VAL A 49 HIS A 55 -1 O ILE A 54 N TRP A 33 SHEET 4 A 4 LYS A 66 PHE A 69 -1 O ALA A 68 N THR A 53 SHEET 1 B 2 THR B 5 LYS B 8 0 SHEET 2 B 2 GLU C 37 VAL C 40 -1 O ILE C 38 N ILE B 7 SHEET 1 C 3 SER B 37 PHE B 38 0 SHEET 2 C 3 THR B 29 ILE B 31 -1 N THR B 29 O PHE B 38 SHEET 3 C 3 ILE B 69 SER B 71 -1 O ARG B 70 N THR B 30 SHEET 1 D 3 ARG C 70 CYS C 72 0 SHEET 2 D 3 THR C 61 THR C 64 -1 N MET C 62 O PHE C 71 SHEET 3 D 3 LEU C 100 PRO C 102 -1 O ARG C 101 N THR C 63 LINK SG CYS B 18 ZN ZN B1104 1555 1555 2.67 LINK SG CYS B 21 ZN ZN B1104 1555 1555 2.63 LINK SG CYS B 34 ZN ZN B1105 1555 1555 2.59 LINK ND1 HIS B 36 ZN ZN B1105 1555 1555 2.19 LINK SG CYS B 39 ZN ZN B1104 1555 1555 2.68 LINK SG CYS B 42 ZN ZN B1104 1555 1555 2.61 LINK SG CYS B 53 ZN ZN B1105 1555 1555 2.51 LINK SG CYS B 56 ZN ZN B1105 1555 1555 2.57 LINK SG CYS C 51 ZN ZN C1116 1555 1555 2.61 LINK SG CYS C 54 ZN ZN C1116 1555 1555 2.59 LINK SG CYS C 67 ZN ZN C1115 1555 1555 2.46 LINK ND1 HIS C 69 ZN ZN C1115 1555 1555 2.12 LINK SG CYS C 72 ZN ZN C1116 1555 1555 2.64 LINK SG CYS C 75 ZN ZN C1116 1555 1555 2.54 LINK SG CYS C 87 ZN ZN C1115 1555 1555 2.35 LINK SG CYS C 90 ZN ZN C1115 1555 1555 2.66 CISPEP 1 TYR A 60 PRO A 61 0 5.08 SITE 1 AC1 4 CYS B 18 CYS B 21 CYS B 39 CYS B 42 SITE 1 AC2 4 CYS B 34 HIS B 36 CYS B 53 CYS B 56 SITE 1 AC3 4 CYS C 67 HIS C 69 CYS C 87 CYS C 90 SITE 1 AC4 4 CYS C 51 CYS C 54 CYS C 72 CYS C 75 CRYST1 107.890 107.890 77.572 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009269 0.005351 0.000000 0.00000 SCALE2 0.000000 0.010703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012891 0.00000