HEADER UNKNOWN FUNCTION 28-APR-11 3RQT TITLE 1.5 ANGSTROM CRYSTAL STRUCTURE OF THE COMPLEX OF LIGAND BINDING TITLE 2 COMPONENT OF ABC-TYPE IMPORT SYSTEM FROM STAPHYLOCOCCUS AUREUS WITH TITLE 3 NICKEL AND TWO HISTIDINES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING COMPONENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 93061; SOURCE 4 STRAIN: NCTC 8325; SOURCE 5 GENE: SAOUHSC_00001, SAOUHSC_00201; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 15B KEYWDS LIGAND BINDING COMPONENT, ABC-TYPE IMPORT SYSTEM, NICKEL, SINGLE OR KEYWDS 2 DI-PEPTIDES, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 3 INFECTIOUS DISEASES, CSGID, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,A.HALAVATY,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,O.KIRYUKHINA, AUTHOR 2 F.FALUGI,M.BOTTOMLEY,F.BAGNOLI,G.GRANDI,W.F.ANDERSON,CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 30-OCT-24 3RQT 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3RQT 1 REMARK REVDAT 1 11-MAY-11 3RQT 0 JRNL AUTH G.MINASOV,A.HALAVATY,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR, JRNL AUTH 2 O.KIRYUKHINA,F.FALUGI,M.BOTTOMLEY,F.BAGNOLI,G.GRANDI, JRNL AUTH 3 W.F.ANDERSON JRNL TITL 1.5 ANGSTROM CRYSTAL STRUCTURE OF THE COMPLEX OF LIGAND JRNL TITL 2 BINDING COMPONENT OF ABC-TYPE IMPORT SYSTEM FROM JRNL TITL 3 STAPHYLOCOCCUS AUREUS WITH NICKEL AND TWO HISTIDINES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 73346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3886 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5302 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 299 REMARK 3 BIN FREE R VALUE : 0.2060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 736 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.124 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4272 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2953 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5813 ; 1.588 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7330 ; 0.944 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 3.938 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;37.113 ;25.979 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 832 ; 9.079 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;12.371 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4818 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 767 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2605 ; 0.933 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1026 ; 0.290 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4288 ; 1.668 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1667 ; 2.766 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1525 ; 4.496 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1788 43.0308 13.8294 REMARK 3 T TENSOR REMARK 3 T11: 0.0064 T22: 0.0165 REMARK 3 T33: 0.0189 T12: 0.0026 REMARK 3 T13: 0.0061 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.3546 L22: 0.5864 REMARK 3 L33: 0.8852 L12: -0.1355 REMARK 3 L13: -0.2783 L23: 0.3614 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.0165 S13: -0.0371 REMARK 3 S21: 0.0464 S22: -0.0171 S23: -0.0009 REMARK 3 S31: 0.0331 S32: -0.0214 S33: 0.0475 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 50.2679 59.2932 29.8339 REMARK 3 T TENSOR REMARK 3 T11: 0.0612 T22: 0.0723 REMARK 3 T33: 0.0430 T12: -0.0201 REMARK 3 T13: -0.0418 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.3238 L22: 1.0467 REMARK 3 L33: 0.8396 L12: -0.1660 REMARK 3 L13: 0.1107 L23: -0.0104 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: -0.0218 S13: 0.0258 REMARK 3 S21: 0.2234 S22: -0.0098 S23: -0.1489 REMARK 3 S31: -0.1043 S32: 0.1640 S33: 0.0511 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 226 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 37.7524 76.8051 4.8922 REMARK 3 T TENSOR REMARK 3 T11: 0.0402 T22: 0.0128 REMARK 3 T33: 0.0353 T12: -0.0186 REMARK 3 T13: -0.0038 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.5641 L22: 0.9549 REMARK 3 L33: 0.7857 L12: 0.0078 REMARK 3 L13: 0.0727 L23: 0.0499 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: 0.0432 S13: 0.0965 REMARK 3 S21: -0.0518 S22: -0.0129 S23: -0.0825 REMARK 3 S31: -0.1439 S32: 0.0753 S33: 0.0260 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 313 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8704 66.7137 6.2270 REMARK 3 T TENSOR REMARK 3 T11: 0.0029 T22: 0.0024 REMARK 3 T33: 0.0079 T12: -0.0009 REMARK 3 T13: -0.0007 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.4349 L22: 0.7339 REMARK 3 L33: 0.8769 L12: -0.0751 REMARK 3 L13: -0.0377 L23: 0.1733 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: 0.0193 S13: 0.0237 REMARK 3 S21: -0.0205 S22: -0.0107 S23: -0.0319 REMARK 3 S31: -0.0458 S32: 0.0181 S33: 0.0042 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 441 A 469 REMARK 3 ORIGIN FOR THE GROUP (A): 55.8941 56.0321 23.3273 REMARK 3 T TENSOR REMARK 3 T11: 0.0478 T22: 0.1550 REMARK 3 T33: 0.1065 T12: -0.0117 REMARK 3 T13: -0.0291 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.6459 L22: 2.8093 REMARK 3 L33: 0.5816 L12: 0.5360 REMARK 3 L13: 0.2832 L23: 0.3653 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.1030 S13: -0.0010 REMARK 3 S21: 0.0515 S22: 0.0007 S23: -0.3708 REMARK 3 S31: 0.0076 S32: 0.2817 S33: 0.0109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77770 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.5MG/ML, 0.5M SODIUM REMARK 280 CHLORIDE, 0.01M TRIS, PH 8.3. SCREEN: CLASSICS II (D8), 0.1M REMARK 280 HEPES, PH 7.5, 25% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.97050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.74600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.37950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.74600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.97050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.37950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 GLY A 1 REMARK 465 HIS A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ARG A 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 14 60.49 69.98 REMARK 500 LEU A 14 61.06 69.98 REMARK 500 LYS A 17 -94.24 -103.60 REMARK 500 ALA A 48 -72.95 -122.25 REMARK 500 ARG A 162 -59.06 -134.79 REMARK 500 TYR A 269 33.86 -90.56 REMARK 500 THR A 274 -72.29 -125.80 REMARK 500 ASN A 340 39.97 72.44 REMARK 500 ILE A 371 72.62 -151.63 REMARK 500 LEU A 461 -62.81 -149.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 473 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 471 ND1 REMARK 620 2 HIS A 471 O 92.0 REMARK 620 3 HIS A 471 N 84.8 78.9 REMARK 620 4 HIS A 472 N 99.5 91.9 170.1 REMARK 620 5 HIS A 472 ND1 94.7 172.8 98.9 89.8 REMARK 620 6 HIS A 472 OXT 175.7 84.6 97.1 78.1 88.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS A 471 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS A 472 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 473 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 474 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 477 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 479 DBREF 3RQT A 2 470 UNP Q2G2P5 Q2G2P5_STAA8 2 470 SEQADV 3RQT MSE A -15 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT GLY A -14 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT SER A -13 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT SER A -12 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT HIS A -11 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT HIS A -10 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT HIS A -9 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT HIS A -8 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT HIS A -7 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT HIS A -6 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT GLU A -5 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT ASN A -4 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT LEU A -3 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT TYR A -2 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT PHE A -1 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT GLN A 0 UNP Q2G2P5 EXPRESSION TAG SEQADV 3RQT GLY A 1 UNP Q2G2P5 EXPRESSION TAG SEQRES 1 A 486 MSE GLY SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 A 486 TYR PHE GLN GLY HIS SER SER GLY LYS ASP LEU ASN ILE SEQRES 3 A 486 SER LEU PRO LEU LYS THR LYS SER ILE ALA PRO TYR GLU SEQRES 4 A 486 THR ASP VAL PRO VAL LYS ILE GLY ALA ALA GLU SER LEU SEQRES 5 A 486 PHE LYS THR ASN ASP GLN GLY LYS ILE GLU LYS ALA LEU SEQRES 6 A 486 VAL LYS SER TYR HIS GLN PRO ASN ASP THR THR LEU ASP SEQRES 7 A 486 ILE GLU LEU LYS ASP ASN ILE LYS PHE GLN ASN GLY GLN SEQRES 8 A 486 LYS LEU THR ALA GLU LYS VAL LYS SER SER LEU GLU ASN SEQRES 9 A 486 SER MSE LYS LYS SER ASP LEU VAL LYS TYR SER LEU PRO SEQRES 10 A 486 ILE SER SER ILE THR ALA LYS GLY GLN LYS LEU THR ILE SEQRES 11 A 486 LYS THR ASN SER ALA TYR PRO GLU LEU VAL SER GLU LEU SEQRES 12 A 486 ALA ASN PRO PHE MSE ALA ILE TYR ASP THR ASP ALA LYS SEQRES 13 A 486 SER ASP VAL ASN GLN THR PRO VAL GLY THR GLY PRO TYR SEQRES 14 A 486 GLN ILE LYS ASP TYR LYS GLN SER ARG LYS ILE SER LEU SEQRES 15 A 486 SER ASN PHE LYS ASP TYR TRP GLN GLY LYS PRO LYS LEU SEQRES 16 A 486 ASP HIS ILE THR VAL THR TYR GLN GLU ASP GLY ASN ASN SEQRES 17 A 486 ARG VAL ARG ASN LEU GLU SER GLN LYS ASP ASP LEU ILE SEQRES 18 A 486 THR ASP VAL PRO VAL ASN LYS VAL GLN ASP ILE GLU ASN SEQRES 19 A 486 ASN GLN ASN LEU LYS VAL SER LYS GLU SER GLY PHE ARG SEQRES 20 A 486 THR SER LEU LEU MSE TYR ASN HIS THR ASN LYS LYS MSE SEQRES 21 A 486 THR LYS SER VAL ARG GLU ALA LEU ASP HIS ILE ILE ASP SEQRES 22 A 486 ARG GLN GLY ILE ALA ASP HIS ILE TYR GLN GLY TYR ALA SEQRES 23 A 486 LYS PRO ALA THR SER PRO PHE ASN ASP LYS ILE PRO TYR SEQRES 24 A 486 ILE LYS GLU PRO LYS LEU THR LYS GLN ASN ILE GLU GLN SEQRES 25 A 486 ALA LYS MSE LEU LEU ALA LYS ASP GLY TYR THR LYS GLU SEQRES 26 A 486 HIS PRO LEU LYS ILE LYS LEU ILE THR TYR ASP GLY ARG SEQRES 27 A 486 PRO GLU LEU SER LYS ILE ALA GLN VAL LEU GLN SER ASP SEQRES 28 A 486 ALA LYS LYS ALA ASN ILE GLU ILE ASP ILE LYS SER VAL SEQRES 29 A 486 ASP ASP ILE GLU GLY TYR LEU LYS ASP ARG SER ALA TRP SEQRES 30 A 486 ASP ALA THR MSE TYR SER PHE GLY THR ILE PRO ARG GLY SEQRES 31 A 486 ASP THR GLY TYR PHE PHE ASN GLN ALA TYR LYS LYS ASP SEQRES 32 A 486 GLY ALA ILE ASN LYS GLY ASP TYR ASN ASN SER ASN VAL SEQRES 33 A 486 ASP ASP LEU ILE ASN GLN LEU ASN HIS THR VAL ASP VAL SEQRES 34 A 486 LYS GLU ARG HIS ASN ILE SER ASN ASP ILE ILE LYS LEU SEQRES 35 A 486 SER SER ARG ASP VAL PRO ASN SER TYR ILE ALA TYR ASN SEQRES 36 A 486 ASP GLN ILE VAL ALA ALA ASN SER LYS VAL LYS ASN TYR SEQRES 37 A 486 LYS VAL THR PRO GLU GLY ILE TYR LEU ILE ASP TYR ARG SEQRES 38 A 486 THR THR ILE GLU ARG MODRES 3RQT MSE A 90 MET SELENOMETHIONINE MODRES 3RQT MSE A 132 MET SELENOMETHIONINE MODRES 3RQT MSE A 236 MET SELENOMETHIONINE MODRES 3RQT MSE A 244 MET SELENOMETHIONINE MODRES 3RQT MSE A 299 MET SELENOMETHIONINE MODRES 3RQT MSE A 365 MET SELENOMETHIONINE HET MSE A 90 8 HET MSE A 132 8 HET MSE A 236 8 HET MSE A 244 8 HET MSE A 299 16 HET MSE A 365 8 HET HIS A 471 11 HET HIS A 472 11 HET NI A 473 1 HET EPE A 474 15 HET EPE A 475 15 HET SO4 A 476 5 HET SO4 A 477 5 HET SO4 A 478 5 HET SO4 A 479 5 HETNAM MSE SELENOMETHIONINE HETNAM HIS HISTIDINE HETNAM NI NICKEL (II) ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM SO4 SULFATE ION HETSYN EPE HEPES FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 HIS 2(C6 H10 N3 O2 1+) FORMUL 4 NI NI 2+ FORMUL 5 EPE 2(C8 H18 N2 O4 S) FORMUL 7 SO4 4(O4 S 2-) FORMUL 11 HOH *736(H2 O) HELIX 1 1 ASP A 25 ILE A 30 1 6 HELIX 2 2 THR A 78 SER A 93 1 16 HELIX 3 3 SER A 93 LEU A 100 1 8 HELIX 4 4 GLU A 122 LEU A 127 1 6 HELIX 5 5 ALA A 128 ALA A 133 5 6 HELIX 6 6 ASP A 189 SER A 199 1 11 HELIX 7 7 PRO A 209 ASN A 211 5 3 HELIX 8 8 LYS A 212 ASN A 219 1 8 HELIX 9 9 THR A 245 ILE A 256 1 12 HELIX 10 10 ASP A 257 ILE A 265 1 9 HELIX 11 11 ASN A 293 LYS A 303 1 11 HELIX 12 12 PRO A 323 LYS A 338 1 16 HELIX 13 13 ASP A 350 LEU A 355 1 6 HELIX 14 14 THR A 376 TYR A 384 1 9 HELIX 15 15 ASN A 397 HIS A 409 1 13 HELIX 16 16 ASP A 412 VAL A 431 1 20 SHEET 1 A 7 TYR A 153 LYS A 159 0 SHEET 2 A 7 LYS A 163 ASN A 168 -1 O SER A 165 N LYS A 156 SHEET 3 A 7 HIS A 181 TYR A 186 -1 O VAL A 184 N ILE A 164 SHEET 4 A 7 ASP A 7 LEU A 12 1 N ILE A 10 O THR A 183 SHEET 5 A 7 LEU A 204 THR A 206 1 O LEU A 204 N SER A 11 SHEET 6 A 7 ASN A 433 ASN A 446 -1 O ALA A 444 N ILE A 205 SHEET 7 A 7 ALA A 270 PRO A 272 -1 N LYS A 271 O TYR A 438 SHEET 1 B10 TYR A 153 LYS A 159 0 SHEET 2 B10 LYS A 163 ASN A 168 -1 O SER A 165 N LYS A 156 SHEET 3 B10 HIS A 181 TYR A 186 -1 O VAL A 184 N ILE A 164 SHEET 4 B10 ASP A 7 LEU A 12 1 N ILE A 10 O THR A 183 SHEET 5 B10 LEU A 204 THR A 206 1 O LEU A 204 N SER A 11 SHEET 6 B10 ASN A 433 ASN A 446 -1 O ALA A 444 N ILE A 205 SHEET 7 B10 LEU A 222 TYR A 237 -1 N SER A 225 O VAL A 443 SHEET 8 B10 ALA A 363 GLY A 369 -1 O THR A 364 N MSE A 236 SHEET 9 B10 LEU A 312 THR A 318 1 N ILE A 317 O MSE A 365 SHEET 10 B10 ILE A 341 SER A 347 1 O GLU A 342 N LEU A 312 SHEET 1 C 2 PHE A 37 THR A 39 0 SHEET 2 C 2 ILE A 45 LYS A 47 -1 O GLU A 46 N LYS A 38 SHEET 1 D 4 VAL A 50 ASN A 57 0 SHEET 2 D 4 THR A 60 LEU A 65 -1 O GLU A 64 N SER A 52 SHEET 3 D 4 LYS A 111 THR A 116 -1 O LEU A 112 N ILE A 63 SHEET 4 D 4 ILE A 102 LYS A 108 -1 N SER A 104 O LYS A 115 SHEET 1 E 2 VAL A 449 LYS A 450 0 SHEET 2 E 2 THR A 467 ILE A 468 -1 O THR A 467 N LYS A 450 LINK C SER A 89 N MSE A 90 1555 1555 1.32 LINK C MSE A 90 N LYS A 91 1555 1555 1.32 LINK C PHE A 131 N MSE A 132 1555 1555 1.33 LINK C MSE A 132 N ALA A 133 1555 1555 1.32 LINK C LEU A 235 N MSE A 236 1555 1555 1.33 LINK C MSE A 236 N TYR A 237 1555 1555 1.32 LINK C LYS A 243 N MSE A 244 1555 1555 1.34 LINK C MSE A 244 N THR A 245 1555 1555 1.32 LINK C LYS A 298 N AMSE A 299 1555 1555 1.33 LINK C LYS A 298 N BMSE A 299 1555 1555 1.33 LINK C AMSE A 299 N LEU A 300 1555 1555 1.34 LINK C BMSE A 299 N LEU A 300 1555 1555 1.33 LINK C THR A 364 N MSE A 365 1555 1555 1.32 LINK C MSE A 365 N TYR A 366 1555 1555 1.33 LINK ND1 HIS A 471 NI NI A 473 1555 1555 2.06 LINK O HIS A 471 NI NI A 473 1555 1555 2.12 LINK N HIS A 471 NI NI A 473 1555 1555 2.14 LINK N HIS A 472 NI NI A 473 1555 1555 2.08 LINK ND1 HIS A 472 NI NI A 473 1555 1555 2.10 LINK OXT HIS A 472 NI NI A 473 1555 1555 2.14 SITE 1 AC1 12 ASP A 25 ARG A 231 GLU A 352 TYR A 366 SITE 2 AC1 12 SER A 367 PHE A 368 GLY A 369 ILE A 390 SITE 3 AC1 12 HIS A 472 NI A 473 HOH A 843 HOH A 915 SITE 1 AC2 11 LEU A 14 ARG A 231 TYR A 319 ARG A 322 SITE 2 AC2 11 ILE A 351 GLU A 352 TYR A 366 SER A 367 SITE 3 AC2 11 HIS A 471 NI A 473 HOH A 811 SITE 1 AC3 2 HIS A 471 HIS A 472 SITE 1 AC4 12 ILE A 45 GLU A 46 LYS A 47 TYR A 53 SITE 2 AC4 12 TYR A 98 LYS A 386 ASP A 387 ASP A 401 SITE 3 AC4 12 HOH A 765 HOH A 812 HOH A 907 HOH A1034 SITE 1 AC5 9 GLU A 87 ILE A 102 SER A 103 PRO A 282 SITE 2 AC5 9 TYR A 283 HOH A 582 HOH A 609 HOH A 674 SITE 3 AC5 9 HOH A 982 SITE 1 AC6 5 LYS A 51 LYS A 66 ASP A 67 ASN A 399 SITE 2 AC6 5 HOH A1038 SITE 1 AC7 7 ILE A 216 GLU A 217 LEU A 222 LYS A 223 SITE 2 AC7 7 VAL A 224 HOH A 607 HOH A 668 SITE 1 AC8 8 GLN A 145 TYR A 158 LYS A 159 GLN A 160 SITE 2 AC8 8 ARG A 162 GLN A 330 GLN A 333 HOH A 942 SITE 1 AC9 7 LYS A 156 LYS A 315 LYS A 346 TYR A 354 SITE 2 AC9 7 HOH A 745 HOH A1067 HOH A1182 CRYST1 61.941 66.759 115.492 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008659 0.00000