HEADER OXIDOREDUCTASE 02-MAY-11 3RSH TITLE STRUCTURE OF 3-KETOACYL-(ACYL-CARRIER-PROTEIN)REDUCTASE (FABG) FROM TITLE 2 VIBRIO CHOLERAE O1 COMPLEXED WITH NADP+ (SPACE GROUP P62) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.100; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: VCD_002346; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, OXIREDUCTASE, FABG, ACYL CARRIER PROTEIN, CELL KEYWDS 3 PLASMA, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HOU,M.CHRUSZCZ,D.R.COOPER,M.GRABOWSKI,H.ZHENG,T.OSINSKI,I.SHUMILIN, AUTHOR 2 W.ANDERSON,W.MINOR,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS AUTHOR 3 DISEASES (CSGID) REVDAT 6 13-SEP-23 3RSH 1 REMARK REVDAT 5 13-APR-22 3RSH 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 23-MAR-16 3RSH 1 JRNL REVDAT 3 25-NOV-15 3RSH 1 JRNL REVDAT 2 02-MAY-12 3RSH 1 AUTHOR JRNL VERSN REVDAT 1 11-MAY-11 3RSH 0 JRNL AUTH J.HOU,H.ZHENG,M.CHRUSZCZ,M.D.ZIMMERMAN,I.A.SHUMILIN, JRNL AUTH 2 T.OSINSKI,M.DEMAS,S.GRIMSHAW,W.MINOR JRNL TITL DISSECTING THE STRUCTURAL ELEMENTS FOR THE ACTIVATION OF JRNL TITL 2 BETA-KETOACYL-(ACYL CARRIER PROTEIN) REDUCTASE FROM VIBRIO JRNL TITL 3 CHOLERAE. JRNL REF J.BACTERIOL. V. 198 463 2015 JRNL REFN ISSN 0021-9193 JRNL PMID 26553852 JRNL DOI 10.1128/JB.00360-15 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 29935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1611 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2203 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1470 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 167 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.10000 REMARK 3 B22 (A**2) : 11.10000 REMARK 3 B33 (A**2) : -22.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.082 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3756 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2438 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5087 ; 1.261 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5968 ; 0.857 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 5.540 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;35.390 ;24.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 629 ;13.567 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.212 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 594 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4122 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 705 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2407 ; 0.510 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1026 ; 0.137 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3818 ; 0.890 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1349 ; 1.476 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1269 ; 2.429 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 180 4 REMARK 3 1 B 2 B 180 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2188 ; 0.200 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2188 ; 0.420 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 181 A 210 4 REMARK 3 1 B 181 B 210 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 278 ; 0.300 ; 0.500 REMARK 3 MEDIUM THERMAL 2 A (A**2): 278 ; 0.260 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 211 A 248 1 REMARK 3 1 B 211 B 248 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 465 ; 0.020 ; 0.050 REMARK 3 TIGHT THERMAL 3 A (A**2): 465 ; 0.100 ; 0.500 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.536 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H-K, K, -L REMARK 3 TWIN FRACTION : 0.464 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1610 11.8630 -2.2090 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.1226 REMARK 3 T33: 0.1647 T12: -0.0548 REMARK 3 T13: -0.0170 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.8789 L22: 1.8307 REMARK 3 L33: 2.7119 L12: 0.2939 REMARK 3 L13: -0.8355 L23: -0.4662 REMARK 3 S TENSOR REMARK 3 S11: -0.1346 S12: 0.1623 S13: -0.0775 REMARK 3 S21: -0.0985 S22: 0.1770 S23: 0.0906 REMARK 3 S31: 0.3422 S32: -0.2101 S33: -0.0424 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 169 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1270 22.9410 -4.5690 REMARK 3 T TENSOR REMARK 3 T11: 0.0051 T22: 0.1060 REMARK 3 T33: 0.1356 T12: -0.0044 REMARK 3 T13: -0.0040 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.1131 L22: 0.6572 REMARK 3 L33: 0.7518 L12: 0.1501 REMARK 3 L13: -0.0786 L23: 0.1731 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: 0.2176 S13: -0.0218 REMARK 3 S21: -0.0251 S22: 0.0524 S23: 0.0285 REMARK 3 S31: 0.0442 S32: -0.1044 S33: -0.0473 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9280 16.5030 9.4350 REMARK 3 T TENSOR REMARK 3 T11: 0.0434 T22: 0.0682 REMARK 3 T33: 0.1495 T12: 0.0010 REMARK 3 T13: 0.0055 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.6760 L22: 0.9273 REMARK 3 L33: 0.6923 L12: 0.2114 REMARK 3 L13: 0.4239 L23: -0.3008 REMARK 3 S TENSOR REMARK 3 S11: 0.0764 S12: 0.1130 S13: -0.0721 REMARK 3 S21: 0.0264 S22: -0.0372 S23: -0.0033 REMARK 3 S31: 0.1087 S32: 0.0323 S33: -0.0392 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 78 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7130 15.6380 34.6330 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.0521 REMARK 3 T33: 0.1395 T12: -0.0691 REMARK 3 T13: 0.0541 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.6023 L22: 1.3407 REMARK 3 L33: 4.0425 L12: -0.0309 REMARK 3 L13: -0.3198 L23: 0.9575 REMARK 3 S TENSOR REMARK 3 S11: 0.0778 S12: -0.1172 S13: -0.0455 REMARK 3 S21: 0.1378 S22: -0.0937 S23: 0.1160 REMARK 3 S31: 0.1923 S32: -0.1532 S33: 0.0160 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 169 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1550 23.1880 33.3880 REMARK 3 T TENSOR REMARK 3 T11: 0.1478 T22: 0.0239 REMARK 3 T33: 0.1450 T12: -0.0500 REMARK 3 T13: 0.0165 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.9933 L22: 1.1361 REMARK 3 L33: 0.5361 L12: 0.7629 REMARK 3 L13: -0.0271 L23: 0.1914 REMARK 3 S TENSOR REMARK 3 S11: 0.1413 S12: -0.1146 S13: -0.0018 REMARK 3 S21: 0.2783 S22: -0.1113 S23: 0.0380 REMARK 3 S31: 0.0368 S32: -0.0083 S33: -0.0300 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 170 B 248 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2660 26.3070 20.9340 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.0406 REMARK 3 T33: 0.1607 T12: -0.0181 REMARK 3 T13: 0.0387 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.8264 L22: 1.7330 REMARK 3 L33: 0.6875 L12: -0.2918 REMARK 3 L13: 0.1850 L23: -0.5653 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: 0.0224 S13: 0.0336 REMARK 3 S21: 0.2398 S22: -0.0317 S23: 0.0606 REMARK 3 S31: -0.0404 S32: -0.1257 S33: 0.0038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31596 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 26.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59300 REMARK 200 R SYM FOR SHELL (I) : 0.59300 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: 3OP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH9.0, 2.6M AMMONIUM REMARK 280 SULFATE, 5% TACSIMATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.78667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.39333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 126.78667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.39333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -318.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 31.88800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 55.23164 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 B 254 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 195 REMARK 465 LEU A 196 REMARK 465 ASN A 197 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 68 CD OE1 OE2 REMARK 470 LYS A 131 CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 ASP A 198 CG OD1 OD2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 191 CG OD1 OD2 REMARK 470 MET B 192 CG SD CE REMARK 470 ASP B 198 CG OD1 OD2 REMARK 470 GLU B 199 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 97 144.93 -177.45 REMARK 500 LEU A 115 -60.92 -129.45 REMARK 500 LEU B 115 -58.52 -122.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 261 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OP4 RELATED DB: PDB REMARK 900 RELATED ID: 3RRO RELATED DB: PDB REMARK 900 RELATED ID: IDP90557 RELATED DB: TARGETDB DBREF 3RSH A 1 248 UNP C3NP04 C3NP04_VIBCJ 1 248 DBREF 3RSH B 1 248 UNP C3NP04 C3NP04_VIBCJ 1 248 SEQADV 3RSH SER A -2 UNP C3NP04 EXPRESSION TAG SEQADV 3RSH ASN A -1 UNP C3NP04 EXPRESSION TAG SEQADV 3RSH ALA A 0 UNP C3NP04 EXPRESSION TAG SEQADV 3RSH SER B -2 UNP C3NP04 EXPRESSION TAG SEQADV 3RSH ASN B -1 UNP C3NP04 EXPRESSION TAG SEQADV 3RSH ALA B 0 UNP C3NP04 EXPRESSION TAG SEQRES 1 A 251 SER ASN ALA MET SER GLN PHE MET ASN LEU GLU GLY LYS SEQRES 2 A 251 VAL ALA LEU VAL THR GLY ALA SER ARG GLY ILE GLY LYS SEQRES 3 A 251 ALA ILE ALA GLU LEU LEU ALA GLU ARG GLY ALA LYS VAL SEQRES 4 A 251 ILE GLY THR ALA THR SER GLU SER GLY ALA GLN ALA ILE SEQRES 5 A 251 SER ASP TYR LEU GLY ASP ASN GLY LYS GLY MET ALA LEU SEQRES 6 A 251 ASN VAL THR ASN PRO GLU SER ILE GLU ALA VAL LEU LYS SEQRES 7 A 251 ALA ILE THR ASP GLU PHE GLY GLY VAL ASP ILE LEU VAL SEQRES 8 A 251 ASN ASN ALA GLY ILE THR ARG ASP ASN LEU LEU MET ARG SEQRES 9 A 251 MET LYS GLU GLU GLU TRP SER ASP ILE MET GLU THR ASN SEQRES 10 A 251 LEU THR SER ILE PHE ARG LEU SER LYS ALA VAL LEU ARG SEQRES 11 A 251 GLY MET MET LYS LYS ARG GLN GLY ARG ILE ILE ASN VAL SEQRES 12 A 251 GLY SER VAL VAL GLY THR MET GLY ASN ALA GLY GLN ALA SEQRES 13 A 251 ASN TYR ALA ALA ALA LYS ALA GLY VAL ILE GLY PHE THR SEQRES 14 A 251 LYS SER MET ALA ARG GLU VAL ALA SER ARG GLY VAL THR SEQRES 15 A 251 VAL ASN THR VAL ALA PRO GLY PHE ILE GLU THR ASP MET SEQRES 16 A 251 THR LYS ALA LEU ASN ASP GLU GLN ARG THR ALA THR LEU SEQRES 17 A 251 ALA GLN VAL PRO ALA GLY ARG LEU GLY ASP PRO ARG GLU SEQRES 18 A 251 ILE ALA SER ALA VAL ALA PHE LEU ALA SER PRO GLU ALA SEQRES 19 A 251 ALA TYR ILE THR GLY GLU THR LEU HIS VAL ASN GLY GLY SEQRES 20 A 251 MET TYR MET ILE SEQRES 1 B 251 SER ASN ALA MET SER GLN PHE MET ASN LEU GLU GLY LYS SEQRES 2 B 251 VAL ALA LEU VAL THR GLY ALA SER ARG GLY ILE GLY LYS SEQRES 3 B 251 ALA ILE ALA GLU LEU LEU ALA GLU ARG GLY ALA LYS VAL SEQRES 4 B 251 ILE GLY THR ALA THR SER GLU SER GLY ALA GLN ALA ILE SEQRES 5 B 251 SER ASP TYR LEU GLY ASP ASN GLY LYS GLY MET ALA LEU SEQRES 6 B 251 ASN VAL THR ASN PRO GLU SER ILE GLU ALA VAL LEU LYS SEQRES 7 B 251 ALA ILE THR ASP GLU PHE GLY GLY VAL ASP ILE LEU VAL SEQRES 8 B 251 ASN ASN ALA GLY ILE THR ARG ASP ASN LEU LEU MET ARG SEQRES 9 B 251 MET LYS GLU GLU GLU TRP SER ASP ILE MET GLU THR ASN SEQRES 10 B 251 LEU THR SER ILE PHE ARG LEU SER LYS ALA VAL LEU ARG SEQRES 11 B 251 GLY MET MET LYS LYS ARG GLN GLY ARG ILE ILE ASN VAL SEQRES 12 B 251 GLY SER VAL VAL GLY THR MET GLY ASN ALA GLY GLN ALA SEQRES 13 B 251 ASN TYR ALA ALA ALA LYS ALA GLY VAL ILE GLY PHE THR SEQRES 14 B 251 LYS SER MET ALA ARG GLU VAL ALA SER ARG GLY VAL THR SEQRES 15 B 251 VAL ASN THR VAL ALA PRO GLY PHE ILE GLU THR ASP MET SEQRES 16 B 251 THR LYS ALA LEU ASN ASP GLU GLN ARG THR ALA THR LEU SEQRES 17 B 251 ALA GLN VAL PRO ALA GLY ARG LEU GLY ASP PRO ARG GLU SEQRES 18 B 251 ILE ALA SER ALA VAL ALA PHE LEU ALA SER PRO GLU ALA SEQRES 19 B 251 ALA TYR ILE THR GLY GLU THR LEU HIS VAL ASN GLY GLY SEQRES 20 B 251 MET TYR MET ILE HET SO4 A 249 5 HET SO4 A 250 5 HET SO4 A 251 5 HET SO4 A 252 5 HET SO4 A 253 5 HET NAP A 254 48 HET EDO A 255 4 HET UNX A 256 1 HET UNX A 257 1 HET UNX A 258 1 HET SO4 B 249 5 HET SO4 B 250 5 HET SO4 B 251 5 HET SO4 B 252 5 HET SO4 B 253 5 HET SO4 B 254 5 HET NAP B 255 48 HET UNX B 256 1 HET UNX B 257 1 HET UNX B 258 1 HET UNX B 259 1 HET UNX B 260 1 HET EDO B 261 4 HETNAM SO4 SULFATE ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM UNX UNKNOWN ATOM OR ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 11(O4 S 2-) FORMUL 8 NAP 2(C21 H28 N7 O17 P3) FORMUL 9 EDO 2(C2 H6 O2) FORMUL 10 UNX 8(X) FORMUL 26 HOH *149(H2 O) HELIX 1 1 ARG A 19 ARG A 32 1 14 HELIX 2 2 SER A 42 GLY A 54 1 13 HELIX 3 3 ASN A 66 GLY A 82 1 17 HELIX 4 4 LEU A 98 MET A 102 5 5 HELIX 5 5 LYS A 103 LEU A 115 1 13 HELIX 6 6 LEU A 115 ARG A 133 1 19 HELIX 7 7 SER A 142 GLY A 148 1 7 HELIX 8 8 GLN A 152 ALA A 174 1 23 HELIX 9 9 ASP A 198 ALA A 206 1 9 HELIX 10 10 ASP A 215 SER A 228 1 14 HELIX 11 11 PRO A 229 ALA A 232 5 4 HELIX 12 12 ARG B 19 ARG B 32 1 14 HELIX 13 13 SER B 42 GLY B 54 1 13 HELIX 14 14 ASN B 66 GLY B 82 1 17 HELIX 15 15 LEU B 98 MET B 102 5 5 HELIX 16 16 LYS B 103 LEU B 115 1 13 HELIX 17 17 LEU B 115 ARG B 133 1 19 HELIX 18 18 SER B 142 GLY B 148 1 7 HELIX 19 19 GLN B 152 ALA B 174 1 23 HELIX 20 20 ASN B 197 ALA B 206 1 10 HELIX 21 21 ASP B 215 SER B 228 1 14 HELIX 22 22 PRO B 229 ALA B 232 5 4 SHEET 1 A 7 GLY A 57 ALA A 61 0 SHEET 2 A 7 LYS A 35 ALA A 40 1 N GLY A 38 O MET A 60 SHEET 3 A 7 VAL A 11 VAL A 14 1 N ALA A 12 O LYS A 35 SHEET 4 A 7 ILE A 86 ASN A 89 1 O VAL A 88 N LEU A 13 SHEET 5 A 7 GLY A 135 VAL A 140 1 O ILE A 138 N LEU A 87 SHEET 6 A 7 VAL A 178 PRO A 185 1 O VAL A 183 N ASN A 139 SHEET 7 A 7 THR A 238 VAL A 241 1 O LEU A 239 N THR A 182 SHEET 1 B 7 GLY B 57 ALA B 61 0 SHEET 2 B 7 LYS B 35 ALA B 40 1 N GLY B 38 O MET B 60 SHEET 3 B 7 VAL B 11 VAL B 14 1 N ALA B 12 O ILE B 37 SHEET 4 B 7 ILE B 86 ASN B 89 1 O VAL B 88 N LEU B 13 SHEET 5 B 7 GLY B 135 VAL B 140 1 O ILE B 138 N LEU B 87 SHEET 6 B 7 VAL B 178 PRO B 185 1 O VAL B 183 N ASN B 139 SHEET 7 B 7 THR B 238 VAL B 241 1 O LEU B 239 N THR B 182 SITE 1 AC1 2 ARG A 133 ARG A 176 SITE 1 AC2 4 ARG A 19 GLY A 20 LYS A 23 HOH A 277 SITE 1 AC3 3 LYS A 103 GLU A 104 LYS A 123 SITE 1 AC4 3 ILE A 93 ARG A 95 HOH A 321 SITE 1 AC5 2 GLY A 83 LYS A 132 SITE 1 AC6 28 GLY A 16 ALA A 17 SER A 18 ARG A 19 SITE 2 AC6 28 ILE A 21 THR A 41 LEU A 62 ASN A 63 SITE 3 AC6 28 VAL A 64 ASN A 90 ALA A 91 GLY A 92 SITE 4 AC6 28 VAL A 140 GLY A 141 SER A 142 TYR A 155 SITE 5 AC6 28 LYS A 159 PRO A 185 GLY A 186 ILE A 188 SITE 6 AC6 28 THR A 190 MET A 192 THR A 193 HOH A 298 SITE 7 AC6 28 HOH A 306 HOH A 309 HOH A 320 HOH A 322 SITE 1 AC7 2 ILE A 248 LYS B 167 SITE 1 AC8 5 ARG B 19 GLY B 20 LYS B 23 HOH B 278 SITE 2 AC8 5 HOH B 297 SITE 1 AC9 2 LYS B 103 GLU B 104 SITE 1 BC1 5 SER A 2 ARG A 32 MET B 1 SER B 2 SITE 2 BC1 5 ARG B 32 SITE 1 BC2 4 ILE B 93 ARG B 95 HOH B 269 HOH B 309 SITE 1 BC3 2 ARG B 133 ARG B 176 SITE 1 BC4 2 GLY B 83 LYS B 132 SITE 1 BC5 21 GLY B 16 SER B 18 ARG B 19 ILE B 21 SITE 2 BC5 21 THR B 41 LEU B 62 ASN B 63 VAL B 64 SITE 3 BC5 21 ASN B 90 ALA B 91 ILE B 93 VAL B 140 SITE 4 BC5 21 GLY B 141 TYR B 155 LYS B 159 PRO B 185 SITE 5 BC5 21 GLY B 186 ILE B 188 THR B 190 HOH B 286 SITE 6 BC5 21 HOH B 288 SITE 1 BC6 2 LYS A 167 ILE B 248 CRYST1 63.776 63.776 190.180 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015680 0.009053 0.000000 0.00000 SCALE2 0.000000 0.018106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005258 0.00000