HEADER TRANSFERASE/TRANSFERASE INHIBITOR 04-MAY-11 3RU0 TITLE COCRYSTAL STRUCTURE OF HUMAN SMYD3 WITH INHIBITOR SINEFUNGIN BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: SET AND MYND DOMAIN-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 1; COMPND 5 EC: 2.1.1.43; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD3, ZMYND1, ZNFN3A1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS METHYLTRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.W.FOREMAN,M.BROWN,F.PARK,S.EMTAGE,J.HARRISS,C.DAS,L.ZHU,A.CREW, AUTHOR 2 L.ARNOLD,S.SHAABAN,P.TUCKER REVDAT 3 28-FEB-24 3RU0 1 REMARK SEQADV LINK REVDAT 2 24-AUG-11 3RU0 1 JRNL VERSN REVDAT 1 18-MAY-11 3RU0 0 JRNL AUTH K.W.FOREMAN,M.BROWN,F.PARK,S.EMTAGE,J.HARRISS,C.DAS,L.ZHU, JRNL AUTH 2 A.CREW,L.ARNOLD,S.SHAABAN,P.TUCKER JRNL TITL STRUCTURAL AND FUNCTIONAL PROFILING OF THE HUMAN HISTONE JRNL TITL 2 METHYLTRANSFERASE SMYD3. JRNL REF PLOS ONE V. 6 22290 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21779408 JRNL DOI 10.1371/JOURNAL.PONE.0022290 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 94957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6521 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 482 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RU0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28146, 1.24294 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94957 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.849 REMARK 200 RESOLUTION RANGE LOW (A) : 21.832 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.75UL OF PROTEIN 10MG/ML AND 1MM REMARK 280 SINEFUNGIN IN 25MM TRISHCL PH7.6, 150MM NACL, 1MM TCEP AND REMARK 280 0.75UL RESERVOIR SOLUTION: 100MM HEPES PH 7.5, 16% PEG 3350, REMARK 280 200MM MAGNESIUM CHLORIDE , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.03650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 LEU A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 429 REMARK 465 GLY A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 LEU B 1 REMARK 465 GLU B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 423 REMARK 465 ASN B 424 REMARK 465 ILE B 425 REMARK 465 ARG B 426 REMARK 465 ALA B 427 REMARK 465 SER B 428 REMARK 465 GLU B 429 REMARK 465 GLY B 430 REMARK 465 HIS B 431 REMARK 465 HIS B 432 REMARK 465 HIS B 433 REMARK 465 HIS B 434 REMARK 465 HIS B 435 REMARK 465 HIS B 436 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 4 CG CD1 CD2 REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 84 CD CE NZ REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 114 CG OD1 OD2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 ASN A 134 CG OD1 ND2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 ASP A 139 CG OD1 OD2 REMARK 470 GLU A 142 CD OE1 OE2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 GLN A 281 CG CD OE1 NE2 REMARK 470 LYS A 292 CD CE NZ REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 GLU A 303 CD OE1 OE2 REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 ARG A 426 CG CD NE CZ NH1 NH2 REMARK 470 SER A 428 OG REMARK 470 LEU B 4 CG CD1 CD2 REMARK 470 ASN B 13 CG OD1 ND2 REMARK 470 THR B 22 OG1 CG2 REMARK 470 ARG B 25 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 ARG B 96 CD NE CZ NH1 NH2 REMARK 470 ASP B 114 CG OD1 OD2 REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 ASN B 134 CG OD1 ND2 REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 ASP B 139 CG OD1 OD2 REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 ARG B 145 CD NE CZ NH1 NH2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 GLU B 247 CD OE1 OE2 REMARK 470 ARG B 250 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 267 CG CD OE1 NE2 REMARK 470 GLN B 281 CG CD OE1 NE2 REMARK 470 LYS B 284 CG CD CE NZ REMARK 470 GLU B 295 CD OE1 OE2 REMARK 470 ARG B 319 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 383 CG CD OE1 NE2 REMARK 470 LYS B 391 CG CD CE NZ REMARK 470 ARG B 394 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 406 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 412 CG CD OE1 OE2 REMARK 470 LEU B 416 CG CD1 CD2 REMARK 470 GLU B 419 CG CD OE1 OE2 REMARK 470 GLU B 420 CG CD OE1 OE2 REMARK 470 ASP B 422 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 461 O HOH A 658 1.94 REMARK 500 O HOH B 577 O HOH B 615 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 107 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP B 241 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 51 -64.30 -90.36 REMARK 500 PHE A 362 68.83 -117.80 REMARK 500 PHE B 31 147.20 -172.28 REMARK 500 ASN B 132 29.36 45.32 REMARK 500 PHE B 362 71.65 -119.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 440 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 CYS A 52 SG 108.7 REMARK 620 3 CYS A 71 SG 110.4 108.3 REMARK 620 4 CYS A 75 SG 111.5 114.0 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 439 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 62 SG REMARK 620 2 CYS A 65 SG 109.1 REMARK 620 3 HIS A 83 NE2 110.9 105.3 REMARK 620 4 CYS A 87 SG 110.8 114.6 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 438 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 CYS A 261 SG 115.8 REMARK 620 3 CYS A 263 SG 104.0 109.3 REMARK 620 4 CYS A 266 SG 99.3 113.9 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 438 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 49 SG REMARK 620 2 CYS B 52 SG 108.1 REMARK 620 3 CYS B 71 SG 109.0 110.8 REMARK 620 4 CYS B 75 SG 109.8 116.5 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 439 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 62 SG REMARK 620 2 CYS B 65 SG 111.7 REMARK 620 3 HIS B 83 NE2 108.8 108.4 REMARK 620 4 CYS B 87 SG 108.6 112.2 106.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 440 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 208 SG REMARK 620 2 CYS B 261 SG 111.7 REMARK 620 3 CYS B 263 SG 108.9 105.4 REMARK 620 4 CYS B 266 SG 98.0 109.0 123.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SFG A 437 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 438 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 439 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 440 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SFG B 437 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 438 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 439 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 440 DBREF 3RU0 A 2 428 UNP Q9H7B4 SMYD3_HUMAN 2 428 DBREF 3RU0 B 2 428 UNP Q9H7B4 SMYD3_HUMAN 2 428 SEQADV 3RU0 MET A -1 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 ALA A 0 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 LEU A 1 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 ASN A 13 UNP Q9H7B4 LYS 13 CONFLICT SEQADV 3RU0 GLU A 429 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 GLY A 430 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 HIS A 431 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 HIS A 432 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 HIS A 433 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 HIS A 434 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 HIS A 435 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 HIS A 436 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 MET B -1 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 ALA B 0 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 LEU B 1 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 ASN B 13 UNP Q9H7B4 LYS 13 CONFLICT SEQADV 3RU0 GLU B 429 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 GLY B 430 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 HIS B 431 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 HIS B 432 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 HIS B 433 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 HIS B 434 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 HIS B 435 UNP Q9H7B4 EXPRESSION TAG SEQADV 3RU0 HIS B 436 UNP Q9H7B4 EXPRESSION TAG SEQRES 1 A 438 MET ALA LEU GLU PRO LEU LYS VAL GLU LYS PHE ALA THR SEQRES 2 A 438 ALA ASN ARG GLY ASN GLY LEU ARG ALA VAL THR PRO LEU SEQRES 3 A 438 ARG PRO GLY GLU LEU LEU PHE ARG SER ASP PRO LEU ALA SEQRES 4 A 438 TYR THR VAL CYS LYS GLY SER ARG GLY VAL VAL CYS ASP SEQRES 5 A 438 ARG CYS LEU LEU GLY LYS GLU LYS LEU MET ARG CYS SER SEQRES 6 A 438 GLN CYS ARG VAL ALA LYS TYR CYS SER ALA LYS CYS GLN SEQRES 7 A 438 LYS LYS ALA TRP PRO ASP HIS LYS ARG GLU CYS LYS CYS SEQRES 8 A 438 LEU LYS SER CYS LYS PRO ARG TYR PRO PRO ASP SER VAL SEQRES 9 A 438 ARG LEU LEU GLY ARG VAL VAL PHE LYS LEU MET ASP GLY SEQRES 10 A 438 ALA PRO SER GLU SER GLU LYS LEU TYR SER PHE TYR ASP SEQRES 11 A 438 LEU GLU SER ASN ILE ASN LYS LEU THR GLU ASP LYS LYS SEQRES 12 A 438 GLU GLY LEU ARG GLN LEU VAL MET THR PHE GLN HIS PHE SEQRES 13 A 438 MET ARG GLU GLU ILE GLN ASP ALA SER GLN LEU PRO PRO SEQRES 14 A 438 ALA PHE ASP LEU PHE GLU ALA PHE ALA LYS VAL ILE CYS SEQRES 15 A 438 ASN SER PHE THR ILE CYS ASN ALA GLU MET GLN GLU VAL SEQRES 16 A 438 GLY VAL GLY LEU TYR PRO SER ILE SER LEU LEU ASN HIS SEQRES 17 A 438 SER CYS ASP PRO ASN CYS SER ILE VAL PHE ASN GLY PRO SEQRES 18 A 438 HIS LEU LEU LEU ARG ALA VAL ARG ASP ILE GLU VAL GLY SEQRES 19 A 438 GLU GLU LEU THR ILE CYS TYR LEU ASP MET LEU MET THR SEQRES 20 A 438 SER GLU GLU ARG ARG LYS GLN LEU ARG ASP GLN TYR CYS SEQRES 21 A 438 PHE GLU CYS ASP CYS PHE ARG CYS GLN THR GLN ASP LYS SEQRES 22 A 438 ASP ALA ASP MET LEU THR GLY ASP GLU GLN VAL TRP LYS SEQRES 23 A 438 GLU VAL GLN GLU SER LEU LYS LYS ILE GLU GLU LEU LYS SEQRES 24 A 438 ALA HIS TRP LYS TRP GLU GLN VAL LEU ALA MET CYS GLN SEQRES 25 A 438 ALA ILE ILE SER SER ASN SER GLU ARG LEU PRO ASP ILE SEQRES 26 A 438 ASN ILE TYR GLN LEU LYS VAL LEU ASP CYS ALA MET ASP SEQRES 27 A 438 ALA CYS ILE ASN LEU GLY LEU LEU GLU GLU ALA LEU PHE SEQRES 28 A 438 TYR GLY THR ARG THR MET GLU PRO TYR ARG ILE PHE PHE SEQRES 29 A 438 PRO GLY SER HIS PRO VAL ARG GLY VAL GLN VAL MET LYS SEQRES 30 A 438 VAL GLY LYS LEU GLN LEU HIS GLN GLY MET PHE PRO GLN SEQRES 31 A 438 ALA MET LYS ASN LEU ARG LEU ALA PHE ASP ILE MET ARG SEQRES 32 A 438 VAL THR HIS GLY ARG GLU HIS SER LEU ILE GLU ASP LEU SEQRES 33 A 438 ILE LEU LEU LEU GLU GLU CYS ASP ALA ASN ILE ARG ALA SEQRES 34 A 438 SER GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 438 MET ALA LEU GLU PRO LEU LYS VAL GLU LYS PHE ALA THR SEQRES 2 B 438 ALA ASN ARG GLY ASN GLY LEU ARG ALA VAL THR PRO LEU SEQRES 3 B 438 ARG PRO GLY GLU LEU LEU PHE ARG SER ASP PRO LEU ALA SEQRES 4 B 438 TYR THR VAL CYS LYS GLY SER ARG GLY VAL VAL CYS ASP SEQRES 5 B 438 ARG CYS LEU LEU GLY LYS GLU LYS LEU MET ARG CYS SER SEQRES 6 B 438 GLN CYS ARG VAL ALA LYS TYR CYS SER ALA LYS CYS GLN SEQRES 7 B 438 LYS LYS ALA TRP PRO ASP HIS LYS ARG GLU CYS LYS CYS SEQRES 8 B 438 LEU LYS SER CYS LYS PRO ARG TYR PRO PRO ASP SER VAL SEQRES 9 B 438 ARG LEU LEU GLY ARG VAL VAL PHE LYS LEU MET ASP GLY SEQRES 10 B 438 ALA PRO SER GLU SER GLU LYS LEU TYR SER PHE TYR ASP SEQRES 11 B 438 LEU GLU SER ASN ILE ASN LYS LEU THR GLU ASP LYS LYS SEQRES 12 B 438 GLU GLY LEU ARG GLN LEU VAL MET THR PHE GLN HIS PHE SEQRES 13 B 438 MET ARG GLU GLU ILE GLN ASP ALA SER GLN LEU PRO PRO SEQRES 14 B 438 ALA PHE ASP LEU PHE GLU ALA PHE ALA LYS VAL ILE CYS SEQRES 15 B 438 ASN SER PHE THR ILE CYS ASN ALA GLU MET GLN GLU VAL SEQRES 16 B 438 GLY VAL GLY LEU TYR PRO SER ILE SER LEU LEU ASN HIS SEQRES 17 B 438 SER CYS ASP PRO ASN CYS SER ILE VAL PHE ASN GLY PRO SEQRES 18 B 438 HIS LEU LEU LEU ARG ALA VAL ARG ASP ILE GLU VAL GLY SEQRES 19 B 438 GLU GLU LEU THR ILE CYS TYR LEU ASP MET LEU MET THR SEQRES 20 B 438 SER GLU GLU ARG ARG LYS GLN LEU ARG ASP GLN TYR CYS SEQRES 21 B 438 PHE GLU CYS ASP CYS PHE ARG CYS GLN THR GLN ASP LYS SEQRES 22 B 438 ASP ALA ASP MET LEU THR GLY ASP GLU GLN VAL TRP LYS SEQRES 23 B 438 GLU VAL GLN GLU SER LEU LYS LYS ILE GLU GLU LEU LYS SEQRES 24 B 438 ALA HIS TRP LYS TRP GLU GLN VAL LEU ALA MET CYS GLN SEQRES 25 B 438 ALA ILE ILE SER SER ASN SER GLU ARG LEU PRO ASP ILE SEQRES 26 B 438 ASN ILE TYR GLN LEU LYS VAL LEU ASP CYS ALA MET ASP SEQRES 27 B 438 ALA CYS ILE ASN LEU GLY LEU LEU GLU GLU ALA LEU PHE SEQRES 28 B 438 TYR GLY THR ARG THR MET GLU PRO TYR ARG ILE PHE PHE SEQRES 29 B 438 PRO GLY SER HIS PRO VAL ARG GLY VAL GLN VAL MET LYS SEQRES 30 B 438 VAL GLY LYS LEU GLN LEU HIS GLN GLY MET PHE PRO GLN SEQRES 31 B 438 ALA MET LYS ASN LEU ARG LEU ALA PHE ASP ILE MET ARG SEQRES 32 B 438 VAL THR HIS GLY ARG GLU HIS SER LEU ILE GLU ASP LEU SEQRES 33 B 438 ILE LEU LEU LEU GLU GLU CYS ASP ALA ASN ILE ARG ALA SEQRES 34 B 438 SER GLU GLY HIS HIS HIS HIS HIS HIS HET SFG A 437 27 HET ZN A 438 1 HET ZN A 439 1 HET ZN A 440 1 HET SFG B 437 27 HET ZN B 438 1 HET ZN B 439 1 HET ZN B 440 1 HETNAM SFG SINEFUNGIN HETNAM ZN ZINC ION HETSYN SFG ADENOSYL-ORNITHINE FORMUL 3 SFG 2(C15 H23 N7 O5) FORMUL 4 ZN 6(ZN 2+) FORMUL 11 HOH *482(H2 O) HELIX 1 1 SER A 72 LYS A 84 1 13 HELIX 2 2 GLU A 86 LYS A 94 1 9 HELIX 3 3 PRO A 99 LEU A 112 1 14 HELIX 4 4 SER A 118 LYS A 122 5 5 HELIX 5 5 SER A 125 LEU A 129 5 5 HELIX 6 6 ASN A 132 LEU A 136 5 5 HELIX 7 7 THR A 137 MET A 155 1 19 HELIX 8 8 ASP A 161 LEU A 165 5 5 HELIX 9 9 ASP A 170 SER A 182 1 13 HELIX 10 10 SER A 200 LEU A 204 5 5 HELIX 11 11 THR A 245 CYS A 258 1 14 HELIX 12 12 CYS A 263 THR A 268 1 6 HELIX 13 13 LYS A 271 LEU A 276 1 6 HELIX 14 14 ASP A 279 HIS A 299 1 21 HELIX 15 15 LYS A 301 SER A 317 1 17 HELIX 16 16 ASN A 324 LEU A 341 1 18 HELIX 17 17 LEU A 343 PHE A 362 1 20 HELIX 18 18 HIS A 366 GLN A 383 1 18 HELIX 19 19 MET A 385 HIS A 404 1 20 HELIX 20 20 HIS A 408 SER A 428 1 21 HELIX 21 21 LYS B 42 ARG B 45 5 4 HELIX 22 22 SER B 72 LYS B 84 1 13 HELIX 23 23 GLU B 86 LYS B 94 1 9 HELIX 24 24 PRO B 99 LEU B 112 1 14 HELIX 25 25 SER B 118 LYS B 122 5 5 HELIX 26 26 ASN B 132 LEU B 136 5 5 HELIX 27 27 THR B 137 MET B 155 1 19 HELIX 28 28 ASP B 161 LEU B 165 5 5 HELIX 29 29 ASP B 170 SER B 182 1 13 HELIX 30 30 SER B 200 LEU B 204 5 5 HELIX 31 31 THR B 245 CYS B 258 1 14 HELIX 32 32 CYS B 263 GLN B 269 1 7 HELIX 33 33 LYS B 271 LEU B 276 1 6 HELIX 34 34 ASP B 279 HIS B 299 1 21 HELIX 35 35 LYS B 301 ASN B 316 1 16 HELIX 36 36 ASN B 324 GLY B 342 1 19 HELIX 37 37 LEU B 343 THR B 354 1 12 HELIX 38 38 THR B 354 PHE B 362 1 9 HELIX 39 39 HIS B 366 GLN B 383 1 18 HELIX 40 40 MET B 385 HIS B 404 1 20 HELIX 41 41 HIS B 408 ASP B 422 1 15 SHEET 1 A 4 VAL A 6 ALA A 10 0 SHEET 2 A 4 ASN A 16 ALA A 20 -1 O ARG A 19 N GLU A 7 SHEET 3 A 4 GLU A 234 ILE A 237 -1 O LEU A 235 N LEU A 18 SHEET 4 A 4 ASN A 205 HIS A 206 1 N ASN A 205 O ILE A 237 SHEET 1 B 3 LEU A 29 SER A 33 0 SHEET 2 B 3 HIS A 220 ALA A 225 -1 O LEU A 221 N SER A 33 SHEET 3 B 3 CYS A 212 ASN A 217 -1 N VAL A 215 O LEU A 222 SHEET 1 C 3 ALA A 37 VAL A 40 0 SHEET 2 C 3 GLU A 192 LEU A 197 -1 O VAL A 195 N THR A 39 SHEET 3 C 3 PHE A 183 CYS A 186 -1 N ILE A 185 O VAL A 193 SHEET 1 D 2 MET A 60 ARG A 61 0 SHEET 2 D 2 LYS A 69 TYR A 70 -1 O TYR A 70 N MET A 60 SHEET 1 E 4 VAL B 6 ALA B 10 0 SHEET 2 E 4 ASN B 16 ALA B 20 -1 O GLY B 17 N PHE B 9 SHEET 3 E 4 GLU B 234 ILE B 237 -1 O LEU B 235 N LEU B 18 SHEET 4 E 4 ASN B 205 HIS B 206 1 N ASN B 205 O ILE B 237 SHEET 1 F 3 LEU B 29 SER B 33 0 SHEET 2 F 3 HIS B 220 ALA B 225 -1 O LEU B 223 N LEU B 30 SHEET 3 F 3 CYS B 212 ASN B 217 -1 N ASN B 217 O HIS B 220 SHEET 1 G 3 ALA B 37 VAL B 40 0 SHEET 2 G 3 GLU B 192 LEU B 197 -1 O VAL B 195 N THR B 39 SHEET 3 G 3 PHE B 183 CYS B 186 -1 N ILE B 185 O VAL B 193 SHEET 1 H 2 MET B 60 ARG B 61 0 SHEET 2 H 2 LYS B 69 TYR B 70 -1 O TYR B 70 N MET B 60 LINK SG CYS A 49 ZN ZN A 440 1555 1555 2.37 LINK SG CYS A 52 ZN ZN A 440 1555 1555 2.35 LINK SG CYS A 62 ZN ZN A 439 1555 1555 2.37 LINK SG CYS A 65 ZN ZN A 439 1555 1555 2.26 LINK SG CYS A 71 ZN ZN A 440 1555 1555 2.44 LINK SG CYS A 75 ZN ZN A 440 1555 1555 2.22 LINK NE2 HIS A 83 ZN ZN A 439 1555 1555 2.10 LINK SG CYS A 87 ZN ZN A 439 1555 1555 2.42 LINK SG CYS A 208 ZN ZN A 438 1555 1555 2.42 LINK SG CYS A 261 ZN ZN A 438 1555 1555 2.41 LINK SG CYS A 263 ZN ZN A 438 1555 1555 2.25 LINK SG CYS A 266 ZN ZN A 438 1555 1555 2.35 LINK SG CYS B 49 ZN ZN B 438 1555 1555 2.36 LINK SG CYS B 52 ZN ZN B 438 1555 1555 2.33 LINK SG CYS B 62 ZN ZN B 439 1555 1555 2.26 LINK SG CYS B 65 ZN ZN B 439 1555 1555 2.24 LINK SG CYS B 71 ZN ZN B 438 1555 1555 2.31 LINK SG CYS B 75 ZN ZN B 438 1555 1555 2.38 LINK NE2 HIS B 83 ZN ZN B 439 1555 1555 2.06 LINK SG CYS B 87 ZN ZN B 439 1555 1555 2.40 LINK SG CYS B 208 ZN ZN B 440 1555 1555 2.40 LINK SG CYS B 261 ZN ZN B 440 1555 1555 2.36 LINK SG CYS B 263 ZN ZN B 440 1555 1555 2.27 LINK SG CYS B 266 ZN ZN B 440 1555 1555 2.29 CISPEP 1 LYS A 94 PRO A 95 0 8.29 CISPEP 2 LYS B 94 PRO B 95 0 4.08 SITE 1 AC1 19 ARG A 14 ASN A 16 TYR A 124 ASN A 132 SITE 2 AC1 19 CYS A 180 ASN A 181 SER A 202 LEU A 203 SITE 3 AC1 19 ASN A 205 HIS A 206 TYR A 239 TYR A 257 SITE 4 AC1 19 PHE A 259 HOH A 477 HOH A 504 HOH A 552 SITE 5 AC1 19 HOH A 582 HOH A 588 HOH A 606 SITE 1 AC2 4 CYS A 208 CYS A 261 CYS A 263 CYS A 266 SITE 1 AC3 4 CYS A 62 CYS A 65 HIS A 83 CYS A 87 SITE 1 AC4 4 CYS A 49 CYS A 52 CYS A 71 CYS A 75 SITE 1 AC5 19 ARG B 14 ASN B 16 TYR B 124 ASN B 132 SITE 2 AC5 19 CYS B 180 ASN B 181 SER B 202 LEU B 203 SITE 3 AC5 19 LEU B 204 ASN B 205 HIS B 206 TYR B 239 SITE 4 AC5 19 TYR B 257 PHE B 259 HOH B 447 HOH B 482 SITE 5 AC5 19 HOH B 529 HOH B 589 HOH B 604 SITE 1 AC6 4 CYS B 49 CYS B 52 CYS B 71 CYS B 75 SITE 1 AC7 4 CYS B 62 CYS B 65 HIS B 83 CYS B 87 SITE 1 AC8 4 CYS B 208 CYS B 261 CYS B 263 CYS B 266 CRYST1 58.175 118.073 82.901 90.00 91.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017190 0.000000 0.000474 0.00000 SCALE2 0.000000 0.008469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012067 0.00000