data_3RWX # _entry.id 3RWX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3RWX pdb_00003rwx 10.2210/pdb3rwx/pdb RCSB RCSB065478 ? ? WWPDB D_1000065478 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 393211 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3RWX _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-05-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of a Hypothetical bacterial outer membrane protein (BF2706) from Bacteroides fragilis NCTC 9343 at 2.40 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3RWX _cell.length_a 154.154 _cell.length_b 154.154 _cell.length_c 40.164 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3RWX _symmetry.Int_Tables_number 152 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical bacterial outer membrane protein' 28654.963 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 7 ? ? ? ? 4 water nat water 18.015 113 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Putative lipoprotein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GNNDDDGTN(MLY)AQEIAG(MLY)YEGYSIGNCA(MSE)FTDYV(MSE)GE(MLY)SVATIVPNEDGTINVTYDSGSGE F(MLY)LNNI(MLY)VTS(MLY)TFEGSGQVELS(MSE)ND(MLY)PAGA(MLY)DFTLTGSIDEQQ(MLY)LTL(MLY) VNVPSV(MSE)GGLTIEFIQGTLPISYHVSGTYN(MLY)EANLSVSVGSTTYPDITDC(MLY)VSI(MLY)RSSDDTVEL TL(MLY)GLSNLNSSQTGRA(MSE)NLGDFTVTDV(MLY)VTSTDNSIF(MLY)IEGSINTTDTNNTPITGTLSGTVSNS ETNITFTF(MLY)PGA(MSE)PIDITA(MSE)F(MLY)G(MLY)(MLY) ; _entity_poly.pdbx_seq_one_letter_code_can ;GNNDDDGTNKAQEIAGKYEGYSIGNCAMFTDYVMGEKSVATIVPNEDGTINVTYDSGSGEFKLNNIKVTSKTFEGSGQVE LSMNDKPAGAKDFTLTGSIDEQQKLTLKVNVPSVMGGLTIEFIQGTLPISYHVSGTYNKEANLSVSVGSTTYPDITDCKV SIKRSSDDTVELTLKGLSNLNSSQTGRAMNLGDFTVTDVKVTSTDNSIFKIEGSINTTDTNNTPITGTLSGTVSNSETNI TFTFKPGAMPIDITAMFKGKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 393211 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASN n 1 3 ASN n 1 4 ASP n 1 5 ASP n 1 6 ASP n 1 7 GLY n 1 8 THR n 1 9 ASN n 1 10 MLY n 1 11 ALA n 1 12 GLN n 1 13 GLU n 1 14 ILE n 1 15 ALA n 1 16 GLY n 1 17 MLY n 1 18 TYR n 1 19 GLU n 1 20 GLY n 1 21 TYR n 1 22 SER n 1 23 ILE n 1 24 GLY n 1 25 ASN n 1 26 CYS n 1 27 ALA n 1 28 MSE n 1 29 PHE n 1 30 THR n 1 31 ASP n 1 32 TYR n 1 33 VAL n 1 34 MSE n 1 35 GLY n 1 36 GLU n 1 37 MLY n 1 38 SER n 1 39 VAL n 1 40 ALA n 1 41 THR n 1 42 ILE n 1 43 VAL n 1 44 PRO n 1 45 ASN n 1 46 GLU n 1 47 ASP n 1 48 GLY n 1 49 THR n 1 50 ILE n 1 51 ASN n 1 52 VAL n 1 53 THR n 1 54 TYR n 1 55 ASP n 1 56 SER n 1 57 GLY n 1 58 SER n 1 59 GLY n 1 60 GLU n 1 61 PHE n 1 62 MLY n 1 63 LEU n 1 64 ASN n 1 65 ASN n 1 66 ILE n 1 67 MLY n 1 68 VAL n 1 69 THR n 1 70 SER n 1 71 MLY n 1 72 THR n 1 73 PHE n 1 74 GLU n 1 75 GLY n 1 76 SER n 1 77 GLY n 1 78 GLN n 1 79 VAL n 1 80 GLU n 1 81 LEU n 1 82 SER n 1 83 MSE n 1 84 ASN n 1 85 ASP n 1 86 MLY n 1 87 PRO n 1 88 ALA n 1 89 GLY n 1 90 ALA n 1 91 MLY n 1 92 ASP n 1 93 PHE n 1 94 THR n 1 95 LEU n 1 96 THR n 1 97 GLY n 1 98 SER n 1 99 ILE n 1 100 ASP n 1 101 GLU n 1 102 GLN n 1 103 GLN n 1 104 MLY n 1 105 LEU n 1 106 THR n 1 107 LEU n 1 108 MLY n 1 109 VAL n 1 110 ASN n 1 111 VAL n 1 112 PRO n 1 113 SER n 1 114 VAL n 1 115 MSE n 1 116 GLY n 1 117 GLY n 1 118 LEU n 1 119 THR n 1 120 ILE n 1 121 GLU n 1 122 PHE n 1 123 ILE n 1 124 GLN n 1 125 GLY n 1 126 THR n 1 127 LEU n 1 128 PRO n 1 129 ILE n 1 130 SER n 1 131 TYR n 1 132 HIS n 1 133 VAL n 1 134 SER n 1 135 GLY n 1 136 THR n 1 137 TYR n 1 138 ASN n 1 139 MLY n 1 140 GLU n 1 141 ALA n 1 142 ASN n 1 143 LEU n 1 144 SER n 1 145 VAL n 1 146 SER n 1 147 VAL n 1 148 GLY n 1 149 SER n 1 150 THR n 1 151 THR n 1 152 TYR n 1 153 PRO n 1 154 ASP n 1 155 ILE n 1 156 THR n 1 157 ASP n 1 158 CYS n 1 159 MLY n 1 160 VAL n 1 161 SER n 1 162 ILE n 1 163 MLY n 1 164 ARG n 1 165 SER n 1 166 SER n 1 167 ASP n 1 168 ASP n 1 169 THR n 1 170 VAL n 1 171 GLU n 1 172 LEU n 1 173 THR n 1 174 LEU n 1 175 MLY n 1 176 GLY n 1 177 LEU n 1 178 SER n 1 179 ASN n 1 180 LEU n 1 181 ASN n 1 182 SER n 1 183 SER n 1 184 GLN n 1 185 THR n 1 186 GLY n 1 187 ARG n 1 188 ALA n 1 189 MSE n 1 190 ASN n 1 191 LEU n 1 192 GLY n 1 193 ASP n 1 194 PHE n 1 195 THR n 1 196 VAL n 1 197 THR n 1 198 ASP n 1 199 VAL n 1 200 MLY n 1 201 VAL n 1 202 THR n 1 203 SER n 1 204 THR n 1 205 ASP n 1 206 ASN n 1 207 SER n 1 208 ILE n 1 209 PHE n 1 210 MLY n 1 211 ILE n 1 212 GLU n 1 213 GLY n 1 214 SER n 1 215 ILE n 1 216 ASN n 1 217 THR n 1 218 THR n 1 219 ASP n 1 220 THR n 1 221 ASN n 1 222 ASN n 1 223 THR n 1 224 PRO n 1 225 ILE n 1 226 THR n 1 227 GLY n 1 228 THR n 1 229 LEU n 1 230 SER n 1 231 GLY n 1 232 THR n 1 233 VAL n 1 234 SER n 1 235 ASN n 1 236 SER n 1 237 GLU n 1 238 THR n 1 239 ASN n 1 240 ILE n 1 241 THR n 1 242 PHE n 1 243 THR n 1 244 PHE n 1 245 MLY n 1 246 PRO n 1 247 GLY n 1 248 ALA n 1 249 MSE n 1 250 PRO n 1 251 ILE n 1 252 ASP n 1 253 ILE n 1 254 THR n 1 255 ALA n 1 256 MSE n 1 257 PHE n 1 258 MLY n 1 259 GLY n 1 260 MLY n 1 261 MLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BF2706 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'NCTC 9343' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LBW6_BACFN _struct_ref.pdbx_db_accession Q5LBW6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NNDDDGTNKAQEIAGKYEGYSIGNCAMFTDYVMGEKSVATIVPNEDGTINVTYDSGSGEFKLNNIKVTSKTFEGSGQVEL SMNDKPAGAKDFTLTGSIDEQQKLTLKVNVPSVMGGLTIEFIQGTLPISYHVSGTYNKEANLSVSVGSTTYPDITDCKVS IKRSSDDTVELTLKGLSNLNSSQTGRAMNLGDFTVTDVKVTSTDNSIFKIEGSINTTDTNNTPITGTLSGTVSNSETNIT FTFKPGAMPIDITAMFKGKK ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3RWX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 261 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5LBW6 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 283 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 283 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3RWX _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q5LBW6 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3RWX # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.81 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 74.42 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;0.2M potassium sodium tartrate, 2.0M ammonium sulfate, 0.1M sodium citrate pH 5.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Vertical focusing mirror; double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2011-03-25 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.96109 1.0 2 0.97934 1.0 3 0.97908 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL14-1 _diffrn_source.type 'SSRL BEAMLINE BL14-1' _diffrn_source.pdbx_wavelength_list 0.96109,0.97934,0.97908 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3RWX _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 29.816 _reflns.number_obs 21589 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_netI_over_sigmaI 10.910 _reflns.percent_possible_obs 98.400 _reflns.B_iso_Wilson_estimate 48.034 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.400 2.490 12473 ? 4268 0.672 1.8 ? ? ? ? ? 96.700 1 1 2.490 2.580 10714 ? 3663 0.566 2.1 ? ? ? ? ? 98.100 2 1 2.580 2.700 12459 ? 4219 0.423 2.8 ? ? ? ? ? 97.900 3 1 2.700 2.840 11814 ? 4049 0.313 3.7 ? ? ? ? ? 98.400 4 1 2.840 3.020 12235 ? 4207 0.212 5.4 ? ? ? ? ? 99.000 5 1 3.020 3.250 12033 ? 4129 0.137 8.2 ? ? ? ? ? 99.300 6 1 3.250 3.580 12203 ? 4185 0.078 13.7 ? ? ? ? ? 99.100 7 1 3.580 4.090 12047 ? 4122 0.054 18.5 ? ? ? ? ? 98.700 8 1 4.090 5.140 12045 ? 4146 0.037 25.9 ? ? ? ? ? 99.100 9 1 5.140 ? 12183 ? 4166 0.035 26.1 ? ? ? ? ? 97.900 10 1 # _refine.entry_id 3RWX _refine.ls_d_res_high 2.4000 _refine.ls_d_res_low 29.816 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7800 _refine.ls_number_reflns_obs 21577 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE REFINEMENT WAS RESTRAINED AGAINST THE MAD PHASES. 4. GLYCEROL (GOL) USED AS A CRYOPROTECTANT AND SULFATE (SO4) FROM THE CRYSTALLIZATION WERE MODELED INTO THE STRUCTURE. 5.THE PROTEIN WAS SUBJECTED TO REDUCTIVE METHYLATION PRIOR TO CRYSTALLIZATION AND LYSINES HAVE BEEN MODELED AS N-DIMETHYL-LYSINE (MLY). ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2006 _refine.ls_R_factor_R_work 0.1984 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2418 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1107 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 33.2552 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.0900 _refine.aniso_B[2][2] 1.0900 _refine.aniso_B[3][3] -1.6300 _refine.aniso_B[1][2] 0.5400 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9410 _refine.correlation_coeff_Fo_to_Fc_free 0.9170 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.1920 _refine.overall_SU_ML 0.1220 _refine.overall_SU_B 10.2060 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 92.380 _refine.B_iso_min 17.600 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.370 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1928 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 2093 _refine_hist.d_res_high 2.4000 _refine_hist.d_res_low 29.816 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2078 0.013 0.021 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1331 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2834 1.518 2.039 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3329 0.830 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 281 5.967 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 78 39.691 27.179 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 277 13.986 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 2 9.802 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 352 0.080 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2255 0.005 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 347 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1296 0.638 1.500 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 537 0.119 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 2129 1.316 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 782 2.266 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 691 3.924 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.4000 _refine_ls_shell.d_res_low 2.4620 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.2400 _refine_ls_shell.number_reflns_R_work 1490 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3260 _refine_ls_shell.R_factor_R_free 0.4580 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 78 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1568 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3RWX _struct.title 'Crystal structure of a putative outer membrane protein (BF2706) from Bacteroides fragilis NCTC 9343 at 2.40 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Transmembrane beta-barrel, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TRANSPORT PROTEIN ; _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.entry_id 3RWX # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 9 ? ALA A 15 ? ASN A 31 ALA A 37 1 ? 7 HELX_P HELX_P2 2 PRO A 128 ? VAL A 133 ? PRO A 150 VAL A 155 5 ? 6 HELX_P HELX_P3 3 GLY A 176 ? LEU A 180 ? GLY A 198 LEU A 202 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASN 9 C ? ? ? 1_555 A MLY 10 N ? ? A ASN 31 A MLY 32 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A MLY 10 C ? ? ? 1_555 A ALA 11 N ? ? A MLY 32 A ALA 33 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A GLY 16 C ? ? ? 1_555 A MLY 17 N ? ? A GLY 38 A MLY 39 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? A MLY 17 C ? ? ? 1_555 A TYR 18 N ? ? A MLY 39 A TYR 40 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? A ALA 27 C ? ? ? 1_555 A MSE 28 N ? ? A ALA 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? A MSE 28 C ? ? ? 1_555 A PHE 29 N ? ? A MSE 50 A PHE 51 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale7 covale both ? A VAL 33 C ? ? ? 1_555 A MSE 34 N ? ? A VAL 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? A MSE 34 C ? ? ? 1_555 A GLY 35 N ? ? A MSE 56 A GLY 57 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? A GLU 36 C ? ? ? 1_555 A MLY 37 N ? ? A GLU 58 A MLY 59 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? A MLY 37 C ? ? ? 1_555 A SER 38 N ? ? A MLY 59 A SER 60 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale11 covale both ? A PHE 61 C ? ? ? 1_555 A MLY 62 N ? ? A PHE 83 A MLY 84 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale12 covale both ? A MLY 62 C ? ? ? 1_555 A LEU 63 N ? ? A MLY 84 A LEU 85 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale13 covale both ? A ILE 66 C ? ? ? 1_555 A MLY 67 N ? ? A ILE 88 A MLY 89 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale14 covale both ? A MLY 67 C ? ? ? 1_555 A VAL 68 N ? ? A MLY 89 A VAL 90 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale15 covale both ? A SER 70 C ? ? ? 1_555 A MLY 71 N ? ? A SER 92 A MLY 93 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale16 covale both ? A MLY 71 C ? ? ? 1_555 A THR 72 N ? ? A MLY 93 A THR 94 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale17 covale both ? A SER 82 C ? ? ? 1_555 A MSE 83 N ? ? A SER 104 A MSE 105 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale18 covale both ? A MSE 83 C ? ? ? 1_555 A ASN 84 N ? ? A MSE 105 A ASN 106 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale19 covale both ? A ASP 85 C ? ? ? 1_555 A MLY 86 N ? ? A ASP 107 A MLY 108 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale20 covale both ? A MLY 86 C ? ? ? 1_555 A PRO 87 N ? ? A MLY 108 A PRO 109 1_555 ? ? ? ? ? ? ? 1.362 ? ? covale21 covale both ? A ALA 90 C ? ? ? 1_555 A MLY 91 N ? ? A ALA 112 A MLY 113 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale22 covale both ? A MLY 91 C ? ? ? 1_555 A ASP 92 N ? ? A MLY 113 A ASP 114 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale23 covale both ? A GLN 103 C ? ? ? 1_555 A MLY 104 N ? ? A GLN 125 A MLY 126 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale24 covale both ? A MLY 104 C ? ? ? 1_555 A LEU 105 N ? ? A MLY 126 A LEU 127 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale25 covale both ? A LEU 107 C ? ? ? 1_555 A MLY 108 N ? ? A LEU 129 A MLY 130 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale26 covale both ? A MLY 108 C ? ? ? 1_555 A VAL 109 N ? ? A MLY 130 A VAL 131 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale27 covale both ? A VAL 114 C ? ? ? 1_555 A MSE 115 N ? ? A VAL 136 A MSE 137 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale28 covale both ? A MSE 115 C ? ? ? 1_555 A GLY 116 N ? ? A MSE 137 A GLY 138 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale29 covale both ? A ASN 138 C ? ? ? 1_555 A MLY 139 N ? ? A ASN 160 A MLY 161 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale30 covale both ? A MLY 139 C ? ? ? 1_555 A GLU 140 N ? ? A MLY 161 A GLU 162 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale31 covale both ? A CYS 158 C ? ? ? 1_555 A MLY 159 N ? ? A CYS 180 A MLY 181 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale32 covale both ? A MLY 159 C ? ? ? 1_555 A VAL 160 N ? ? A MLY 181 A VAL 182 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale33 covale both ? A ILE 162 C ? ? ? 1_555 A MLY 163 N ? ? A ILE 184 A MLY 185 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale34 covale both ? A MLY 163 C ? ? ? 1_555 A ARG 164 N ? ? A MLY 185 A ARG 186 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale35 covale both ? A LEU 174 C ? ? ? 1_555 A MLY 175 N ? ? A LEU 196 A MLY 197 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale36 covale both ? A MLY 175 C ? ? ? 1_555 A GLY 176 N ? ? A MLY 197 A GLY 198 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale37 covale both ? A ALA 188 C ? ? ? 1_555 A MSE 189 N ? ? A ALA 210 A MSE 211 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale38 covale both ? A MSE 189 C ? ? ? 1_555 A ASN 190 N ? ? A MSE 211 A ASN 212 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale39 covale both ? A VAL 199 C ? ? ? 1_555 A MLY 200 N ? ? A VAL 221 A MLY 222 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale40 covale both ? A MLY 200 C ? ? ? 1_555 A VAL 201 N ? ? A MLY 222 A VAL 223 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale41 covale both ? A PHE 209 C ? ? ? 1_555 A MLY 210 N ? ? A PHE 231 A MLY 232 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale42 covale both ? A MLY 210 C ? ? ? 1_555 A ILE 211 N ? ? A MLY 232 A ILE 233 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale43 covale both ? A PHE 244 C ? ? ? 1_555 A MLY 245 N ? ? A PHE 266 A MLY 267 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale44 covale both ? A MLY 245 C ? ? ? 1_555 A PRO 246 N ? ? A MLY 267 A PRO 268 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale45 covale both ? A ALA 248 C ? ? ? 1_555 A MSE 249 N ? ? A ALA 270 A MSE 271 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale46 covale both ? A MSE 249 C ? ? ? 1_555 A PRO 250 N ? ? A MSE 271 A PRO 272 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale47 covale both ? A ALA 255 C ? ? ? 1_555 A MSE 256 N ? ? A ALA 277 A MSE 278 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale48 covale both ? A MSE 256 C ? ? ? 1_555 A PHE 257 N ? ? A MSE 278 A PHE 279 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale49 covale both ? A PHE 257 C ? ? ? 1_555 A MLY 258 N ? ? A PHE 279 A MLY 280 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale50 covale both ? A MLY 258 C ? ? ? 1_555 A GLY 259 N ? ? A MLY 280 A GLY 281 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale51 covale both ? A GLY 259 C ? ? ? 1_555 A MLY 260 N ? ? A GLY 281 A MLY 282 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale52 covale both ? A MLY 260 C ? ? ? 1_555 A MLY 261 N ? ? A MLY 282 A MLY 283 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 10 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel B 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 60 ? ILE A 66 ? GLU A 82 ILE A 88 A 2 ILE A 50 ? ASP A 55 ? ILE A 72 ASP A 77 A 3 TYR A 32 ? PRO A 44 ? TYR A 54 PRO A 66 A 4 GLY A 16 ? ASN A 25 ? GLY A 38 ASN A 47 A 5 LEU A 118 ? GLN A 124 ? LEU A 140 GLN A 146 A 6 LEU A 105 ? VAL A 111 ? LEU A 127 VAL A 133 A 7 MLY A 91 ? ILE A 99 ? MLY A 113 ILE A 121 A 8 THR A 72 ? VAL A 79 ? THR A 94 VAL A 101 B 1 GLY A 135 ? TYR A 137 ? GLY A 157 TYR A 159 B 2 MLY A 159 ? ARG A 164 ? MLY A 181 ARG A 186 B 3 THR A 169 ? MLY A 175 ? THR A 191 MLY A 197 B 4 PHE A 194 ? THR A 202 ? PHE A 216 THR A 224 B 5 PHE A 209 ? THR A 218 ? PHE A 231 THR A 240 B 6 PRO A 224 ? SER A 234 ? PRO A 246 SER A 256 B 7 GLU A 237 ? PRO A 246 ? GLU A 259 PRO A 268 B 8 ILE A 253 ? MLY A 260 ? ILE A 275 MLY A 282 B 9 MLY A 139 ? VAL A 147 ? MLY A 161 VAL A 169 B 10 THR A 150 ? THR A 151 ? THR A 172 THR A 173 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 61 ? O PHE A 83 N TYR A 54 ? N TYR A 76 A 2 3 O ASP A 55 ? O ASP A 77 N VAL A 39 ? N VAL A 61 A 3 4 O TYR A 32 ? O TYR A 54 N GLY A 24 ? N GLY A 46 A 4 5 N ASN A 25 ? N ASN A 47 O THR A 119 ? O THR A 141 A 5 6 O LEU A 118 ? O LEU A 140 N VAL A 111 ? N VAL A 133 A 6 7 O ASN A 110 ? O ASN A 132 N THR A 94 ? N THR A 116 A 7 8 O LEU A 95 ? O LEU A 117 N GLY A 75 ? N GLY A 97 B 1 2 N GLY A 135 ? N GLY A 157 O ILE A 162 ? O ILE A 184 B 2 3 N MLY A 163 ? N MLY A 185 O GLU A 171 ? O GLU A 193 B 3 4 N LEU A 172 ? N LEU A 194 O VAL A 196 ? O VAL A 218 B 4 5 N MLY A 200 ? N MLY A 222 O GLU A 212 ? O GLU A 234 B 5 6 N ILE A 215 ? N ILE A 237 O GLY A 227 ? O GLY A 249 B 6 7 N SER A 230 ? N SER A 252 O THR A 241 ? O THR A 263 B 7 8 N PHE A 244 ? N PHE A 266 O ILE A 253 ? O ILE A 275 B 8 9 O MLY A 260 ? O MLY A 282 N MLY A 139 ? N MLY A 161 B 9 10 N VAL A 147 ? N VAL A 169 O THR A 150 ? O THR A 172 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 284 ? 5 'BINDING SITE FOR RESIDUE SO4 A 284' AC2 Software A SO4 285 ? 3 'BINDING SITE FOR RESIDUE SO4 A 285' AC3 Software A GOL 286 ? 5 'BINDING SITE FOR RESIDUE GOL A 286' AC4 Software A GOL 287 ? 4 'BINDING SITE FOR RESIDUE GOL A 287' AC5 Software A GOL 288 ? 5 'BINDING SITE FOR RESIDUE GOL A 288' AC6 Software A GOL 289 ? 4 'BINDING SITE FOR RESIDUE GOL A 289' AC7 Software A GOL 290 ? 5 'BINDING SITE FOR RESIDUE GOL A 290' AC8 Software A GOL 291 ? 2 'BINDING SITE FOR RESIDUE GOL A 291' AC9 Software A GOL 292 ? 2 'BINDING SITE FOR RESIDUE GOL A 292' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 PRO A 153 ? PRO A 175 . ? 3_564 ? 2 AC1 5 MLY A 159 ? MLY A 181 . ? 1_555 ? 3 AC1 5 MLY A 175 ? MLY A 197 . ? 1_555 ? 4 AC1 5 HOH K . ? HOH A 322 . ? 1_555 ? 5 AC1 5 HOH K . ? HOH A 359 . ? 3_564 ? 6 AC2 3 GLY A 35 ? GLY A 57 . ? 1_555 ? 7 AC2 3 GLU A 36 ? GLU A 58 . ? 1_555 ? 8 AC2 3 MLY A 37 ? MLY A 59 . ? 1_555 ? 9 AC3 5 THR A 197 ? THR A 219 . ? 1_555 ? 10 AC3 5 SER A 214 ? SER A 236 . ? 1_555 ? 11 AC3 5 ILE A 215 ? ILE A 237 . ? 1_555 ? 12 AC3 5 ASN A 216 ? ASN A 238 . ? 1_555 ? 13 AC3 5 HOH K . ? HOH A 405 . ? 1_555 ? 14 AC4 4 GLU A 140 ? GLU A 162 . ? 2_665 ? 15 AC4 4 MSE A 256 ? MSE A 278 . ? 1_555 ? 16 AC4 4 MLY A 258 ? MLY A 280 . ? 1_555 ? 17 AC4 4 HOH K . ? HOH A 326 . ? 1_555 ? 18 AC5 5 GLU A 36 ? GLU A 58 . ? 1_555 ? 19 AC5 5 TYR A 131 ? TYR A 153 . ? 1_555 ? 20 AC5 5 HIS A 132 ? HIS A 154 . ? 1_555 ? 21 AC5 5 MLY A 261 ? MLY A 283 . ? 1_555 ? 22 AC5 5 HOH K . ? HOH A 392 . ? 1_555 ? 23 AC6 4 ASP A 157 ? ASP A 179 . ? 1_555 ? 24 AC6 4 SER A 178 ? SER A 200 . ? 1_555 ? 25 AC6 4 ASN A 179 ? ASN A 201 . ? 1_555 ? 26 AC6 4 ASP A 193 ? ASP A 215 . ? 1_555 ? 27 AC7 5 GLY A 135 ? GLY A 157 . ? 1_555 ? 28 AC7 5 THR A 136 ? THR A 158 . ? 1_555 ? 29 AC7 5 SER A 149 ? SER A 171 . ? 3_564 ? 30 AC7 5 ILE A 162 ? ILE A 184 . ? 1_555 ? 31 AC7 5 HOH K . ? HOH A 360 . ? 1_555 ? 32 AC8 2 ASN A 9 ? ASN A 31 . ? 1_555 ? 33 AC8 2 MLY A 10 ? MLY A 32 . ? 1_555 ? 34 AC9 2 THR A 232 ? THR A 254 . ? 1_555 ? 35 AC9 2 THR A 241 ? THR A 263 . ? 1_555 ? # _atom_sites.entry_id 3RWX _atom_sites.fract_transf_matrix[1][1] 0.006487 _atom_sites.fract_transf_matrix[1][2] 0.003745 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007491 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024898 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 ASN 2 24 ? ? ? A . n A 1 3 ASN 3 25 ? ? ? A . n A 1 4 ASP 4 26 ? ? ? A . n A 1 5 ASP 5 27 ? ? ? A . n A 1 6 ASP 6 28 ? ? ? A . n A 1 7 GLY 7 29 ? ? ? A . n A 1 8 THR 8 30 30 THR THR A . n A 1 9 ASN 9 31 31 ASN ASN A . n A 1 10 MLY 10 32 32 MLY MLY A . n A 1 11 ALA 11 33 33 ALA ALA A . n A 1 12 GLN 12 34 34 GLN GLN A . n A 1 13 GLU 13 35 35 GLU GLU A . n A 1 14 ILE 14 36 36 ILE ILE A . n A 1 15 ALA 15 37 37 ALA ALA A . n A 1 16 GLY 16 38 38 GLY GLY A . n A 1 17 MLY 17 39 39 MLY MLY A . n A 1 18 TYR 18 40 40 TYR TYR A . n A 1 19 GLU 19 41 41 GLU GLU A . n A 1 20 GLY 20 42 42 GLY GLY A . n A 1 21 TYR 21 43 43 TYR TYR A . n A 1 22 SER 22 44 44 SER SER A . n A 1 23 ILE 23 45 45 ILE ILE A . n A 1 24 GLY 24 46 46 GLY GLY A . n A 1 25 ASN 25 47 47 ASN ASN A . n A 1 26 CYS 26 48 48 CYS CYS A . n A 1 27 ALA 27 49 49 ALA ALA A . n A 1 28 MSE 28 50 50 MSE MSE A . n A 1 29 PHE 29 51 51 PHE PHE A . n A 1 30 THR 30 52 52 THR THR A . n A 1 31 ASP 31 53 53 ASP ASP A . n A 1 32 TYR 32 54 54 TYR TYR A . n A 1 33 VAL 33 55 55 VAL VAL A . n A 1 34 MSE 34 56 56 MSE MSE A . n A 1 35 GLY 35 57 57 GLY GLY A . n A 1 36 GLU 36 58 58 GLU GLU A . n A 1 37 MLY 37 59 59 MLY MLY A . n A 1 38 SER 38 60 60 SER SER A . n A 1 39 VAL 39 61 61 VAL VAL A . n A 1 40 ALA 40 62 62 ALA ALA A . n A 1 41 THR 41 63 63 THR THR A . n A 1 42 ILE 42 64 64 ILE ILE A . n A 1 43 VAL 43 65 65 VAL VAL A . n A 1 44 PRO 44 66 66 PRO PRO A . n A 1 45 ASN 45 67 67 ASN ASN A . n A 1 46 GLU 46 68 68 GLU GLU A . n A 1 47 ASP 47 69 69 ASP ASP A . n A 1 48 GLY 48 70 70 GLY GLY A . n A 1 49 THR 49 71 71 THR THR A . n A 1 50 ILE 50 72 72 ILE ILE A . n A 1 51 ASN 51 73 73 ASN ASN A . n A 1 52 VAL 52 74 74 VAL VAL A . n A 1 53 THR 53 75 75 THR THR A . n A 1 54 TYR 54 76 76 TYR TYR A . n A 1 55 ASP 55 77 77 ASP ASP A . n A 1 56 SER 56 78 78 SER SER A . n A 1 57 GLY 57 79 79 GLY GLY A . n A 1 58 SER 58 80 80 SER SER A . n A 1 59 GLY 59 81 81 GLY GLY A . n A 1 60 GLU 60 82 82 GLU GLU A . n A 1 61 PHE 61 83 83 PHE PHE A . n A 1 62 MLY 62 84 84 MLY MLY A . n A 1 63 LEU 63 85 85 LEU LEU A . n A 1 64 ASN 64 86 86 ASN ASN A . n A 1 65 ASN 65 87 87 ASN ASN A . n A 1 66 ILE 66 88 88 ILE ILE A . n A 1 67 MLY 67 89 89 MLY MLY A . n A 1 68 VAL 68 90 90 VAL VAL A . n A 1 69 THR 69 91 91 THR THR A . n A 1 70 SER 70 92 92 SER SER A . n A 1 71 MLY 71 93 93 MLY MLY A . n A 1 72 THR 72 94 94 THR THR A . n A 1 73 PHE 73 95 95 PHE PHE A . n A 1 74 GLU 74 96 96 GLU GLU A . n A 1 75 GLY 75 97 97 GLY GLY A . n A 1 76 SER 76 98 98 SER SER A . n A 1 77 GLY 77 99 99 GLY GLY A . n A 1 78 GLN 78 100 100 GLN GLN A . n A 1 79 VAL 79 101 101 VAL VAL A . n A 1 80 GLU 80 102 102 GLU GLU A . n A 1 81 LEU 81 103 103 LEU LEU A . n A 1 82 SER 82 104 104 SER SER A . n A 1 83 MSE 83 105 105 MSE MSE A . n A 1 84 ASN 84 106 106 ASN ASN A . n A 1 85 ASP 85 107 107 ASP ASP A . n A 1 86 MLY 86 108 108 MLY MLY A . n A 1 87 PRO 87 109 109 PRO PRO A . n A 1 88 ALA 88 110 110 ALA ALA A . n A 1 89 GLY 89 111 111 GLY GLY A . n A 1 90 ALA 90 112 112 ALA ALA A . n A 1 91 MLY 91 113 113 MLY MLY A . n A 1 92 ASP 92 114 114 ASP ASP A . n A 1 93 PHE 93 115 115 PHE PHE A . n A 1 94 THR 94 116 116 THR THR A . n A 1 95 LEU 95 117 117 LEU LEU A . n A 1 96 THR 96 118 118 THR THR A . n A 1 97 GLY 97 119 119 GLY GLY A . n A 1 98 SER 98 120 120 SER SER A . n A 1 99 ILE 99 121 121 ILE ILE A . n A 1 100 ASP 100 122 122 ASP ASP A . n A 1 101 GLU 101 123 123 GLU GLU A . n A 1 102 GLN 102 124 124 GLN GLN A . n A 1 103 GLN 103 125 125 GLN GLN A . n A 1 104 MLY 104 126 126 MLY MLY A . n A 1 105 LEU 105 127 127 LEU LEU A . n A 1 106 THR 106 128 128 THR THR A . n A 1 107 LEU 107 129 129 LEU LEU A . n A 1 108 MLY 108 130 130 MLY MLY A . n A 1 109 VAL 109 131 131 VAL VAL A . n A 1 110 ASN 110 132 132 ASN ASN A . n A 1 111 VAL 111 133 133 VAL VAL A . n A 1 112 PRO 112 134 134 PRO PRO A . n A 1 113 SER 113 135 135 SER SER A . n A 1 114 VAL 114 136 136 VAL VAL A . n A 1 115 MSE 115 137 137 MSE MSE A . n A 1 116 GLY 116 138 138 GLY GLY A . n A 1 117 GLY 117 139 139 GLY GLY A . n A 1 118 LEU 118 140 140 LEU LEU A . n A 1 119 THR 119 141 141 THR THR A . n A 1 120 ILE 120 142 142 ILE ILE A . n A 1 121 GLU 121 143 143 GLU GLU A . n A 1 122 PHE 122 144 144 PHE PHE A . n A 1 123 ILE 123 145 145 ILE ILE A . n A 1 124 GLN 124 146 146 GLN GLN A . n A 1 125 GLY 125 147 147 GLY GLY A . n A 1 126 THR 126 148 148 THR THR A . n A 1 127 LEU 127 149 149 LEU LEU A . n A 1 128 PRO 128 150 150 PRO PRO A . n A 1 129 ILE 129 151 151 ILE ILE A . n A 1 130 SER 130 152 152 SER SER A . n A 1 131 TYR 131 153 153 TYR TYR A . n A 1 132 HIS 132 154 154 HIS HIS A . n A 1 133 VAL 133 155 155 VAL VAL A . n A 1 134 SER 134 156 156 SER SER A . n A 1 135 GLY 135 157 157 GLY GLY A . n A 1 136 THR 136 158 158 THR THR A . n A 1 137 TYR 137 159 159 TYR TYR A . n A 1 138 ASN 138 160 160 ASN ASN A . n A 1 139 MLY 139 161 161 MLY MLY A . n A 1 140 GLU 140 162 162 GLU GLU A . n A 1 141 ALA 141 163 163 ALA ALA A . n A 1 142 ASN 142 164 164 ASN ASN A . n A 1 143 LEU 143 165 165 LEU LEU A . n A 1 144 SER 144 166 166 SER SER A . n A 1 145 VAL 145 167 167 VAL VAL A . n A 1 146 SER 146 168 168 SER SER A . n A 1 147 VAL 147 169 169 VAL VAL A . n A 1 148 GLY 148 170 170 GLY GLY A . n A 1 149 SER 149 171 171 SER SER A . n A 1 150 THR 150 172 172 THR THR A . n A 1 151 THR 151 173 173 THR THR A . n A 1 152 TYR 152 174 174 TYR TYR A . n A 1 153 PRO 153 175 175 PRO PRO A . n A 1 154 ASP 154 176 176 ASP ASP A . n A 1 155 ILE 155 177 177 ILE ILE A . n A 1 156 THR 156 178 178 THR THR A . n A 1 157 ASP 157 179 179 ASP ASP A . n A 1 158 CYS 158 180 180 CYS CYS A . n A 1 159 MLY 159 181 181 MLY MLY A . n A 1 160 VAL 160 182 182 VAL VAL A . n A 1 161 SER 161 183 183 SER SER A . n A 1 162 ILE 162 184 184 ILE ILE A . n A 1 163 MLY 163 185 185 MLY MLY A . n A 1 164 ARG 164 186 186 ARG ARG A . n A 1 165 SER 165 187 187 SER SER A . n A 1 166 SER 166 188 188 SER SER A . n A 1 167 ASP 167 189 189 ASP ASP A . n A 1 168 ASP 168 190 190 ASP ASP A . n A 1 169 THR 169 191 191 THR THR A . n A 1 170 VAL 170 192 192 VAL VAL A . n A 1 171 GLU 171 193 193 GLU GLU A . n A 1 172 LEU 172 194 194 LEU LEU A . n A 1 173 THR 173 195 195 THR THR A . n A 1 174 LEU 174 196 196 LEU LEU A . n A 1 175 MLY 175 197 197 MLY MLY A . n A 1 176 GLY 176 198 198 GLY GLY A . n A 1 177 LEU 177 199 199 LEU LEU A . n A 1 178 SER 178 200 200 SER SER A . n A 1 179 ASN 179 201 201 ASN ASN A . n A 1 180 LEU 180 202 202 LEU LEU A . n A 1 181 ASN 181 203 203 ASN ASN A . n A 1 182 SER 182 204 204 SER SER A . n A 1 183 SER 183 205 205 SER SER A . n A 1 184 GLN 184 206 206 GLN GLN A . n A 1 185 THR 185 207 207 THR THR A . n A 1 186 GLY 186 208 208 GLY GLY A . n A 1 187 ARG 187 209 209 ARG ARG A . n A 1 188 ALA 188 210 210 ALA ALA A . n A 1 189 MSE 189 211 211 MSE MSE A . n A 1 190 ASN 190 212 212 ASN ASN A . n A 1 191 LEU 191 213 213 LEU LEU A . n A 1 192 GLY 192 214 214 GLY GLY A . n A 1 193 ASP 193 215 215 ASP ASP A . n A 1 194 PHE 194 216 216 PHE PHE A . n A 1 195 THR 195 217 217 THR THR A . n A 1 196 VAL 196 218 218 VAL VAL A . n A 1 197 THR 197 219 219 THR THR A . n A 1 198 ASP 198 220 220 ASP ASP A . n A 1 199 VAL 199 221 221 VAL VAL A . n A 1 200 MLY 200 222 222 MLY MLY A . n A 1 201 VAL 201 223 223 VAL VAL A . n A 1 202 THR 202 224 224 THR THR A . n A 1 203 SER 203 225 225 SER SER A . n A 1 204 THR 204 226 226 THR THR A . n A 1 205 ASP 205 227 227 ASP ASP A . n A 1 206 ASN 206 228 228 ASN ASN A . n A 1 207 SER 207 229 229 SER SER A . n A 1 208 ILE 208 230 230 ILE ILE A . n A 1 209 PHE 209 231 231 PHE PHE A . n A 1 210 MLY 210 232 232 MLY MLY A . n A 1 211 ILE 211 233 233 ILE ILE A . n A 1 212 GLU 212 234 234 GLU GLU A . n A 1 213 GLY 213 235 235 GLY GLY A . n A 1 214 SER 214 236 236 SER SER A . n A 1 215 ILE 215 237 237 ILE ILE A . n A 1 216 ASN 216 238 238 ASN ASN A . n A 1 217 THR 217 239 239 THR THR A . n A 1 218 THR 218 240 240 THR THR A . n A 1 219 ASP 219 241 241 ASP ASP A . n A 1 220 THR 220 242 242 THR THR A . n A 1 221 ASN 221 243 243 ASN ASN A . n A 1 222 ASN 222 244 244 ASN ASN A . n A 1 223 THR 223 245 245 THR THR A . n A 1 224 PRO 224 246 246 PRO PRO A . n A 1 225 ILE 225 247 247 ILE ILE A . n A 1 226 THR 226 248 248 THR THR A . n A 1 227 GLY 227 249 249 GLY GLY A . n A 1 228 THR 228 250 250 THR THR A . n A 1 229 LEU 229 251 251 LEU LEU A . n A 1 230 SER 230 252 252 SER SER A . n A 1 231 GLY 231 253 253 GLY GLY A . n A 1 232 THR 232 254 254 THR THR A . n A 1 233 VAL 233 255 255 VAL VAL A . n A 1 234 SER 234 256 256 SER SER A . n A 1 235 ASN 235 257 257 ASN ASN A . n A 1 236 SER 236 258 258 SER SER A . n A 1 237 GLU 237 259 259 GLU GLU A . n A 1 238 THR 238 260 260 THR THR A . n A 1 239 ASN 239 261 261 ASN ASN A . n A 1 240 ILE 240 262 262 ILE ILE A . n A 1 241 THR 241 263 263 THR THR A . n A 1 242 PHE 242 264 264 PHE PHE A . n A 1 243 THR 243 265 265 THR THR A . n A 1 244 PHE 244 266 266 PHE PHE A . n A 1 245 MLY 245 267 267 MLY MLY A . n A 1 246 PRO 246 268 268 PRO PRO A . n A 1 247 GLY 247 269 269 GLY GLY A . n A 1 248 ALA 248 270 270 ALA ALA A . n A 1 249 MSE 249 271 271 MSE MSE A . n A 1 250 PRO 250 272 272 PRO PRO A . n A 1 251 ILE 251 273 273 ILE ILE A . n A 1 252 ASP 252 274 274 ASP ASP A . n A 1 253 ILE 253 275 275 ILE ILE A . n A 1 254 THR 254 276 276 THR THR A . n A 1 255 ALA 255 277 277 ALA ALA A . n A 1 256 MSE 256 278 278 MSE MSE A . n A 1 257 PHE 257 279 279 PHE PHE A . n A 1 258 MLY 258 280 280 MLY MLY A . n A 1 259 GLY 259 281 281 GLY GLY A . n A 1 260 MLY 260 282 282 MLY MLY A . n A 1 261 MLY 261 283 283 MLY MLY A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 284 284 SO4 SO4 A . C 2 SO4 1 285 285 SO4 SO4 A . D 3 GOL 1 286 286 GOL GOL A . E 3 GOL 1 287 287 GOL GOL A . F 3 GOL 1 288 288 GOL GOL A . G 3 GOL 1 289 289 GOL GOL A . H 3 GOL 1 290 290 GOL GOL A . I 3 GOL 1 291 291 GOL GOL A . J 3 GOL 1 292 292 GOL GOL A . K 4 HOH 1 293 293 HOH HOH A . K 4 HOH 2 294 294 HOH HOH A . K 4 HOH 3 295 295 HOH HOH A . K 4 HOH 4 296 296 HOH HOH A . K 4 HOH 5 297 297 HOH HOH A . K 4 HOH 6 298 298 HOH HOH A . K 4 HOH 7 299 299 HOH HOH A . K 4 HOH 8 300 300 HOH HOH A . K 4 HOH 9 301 301 HOH HOH A . K 4 HOH 10 302 302 HOH HOH A . K 4 HOH 11 303 303 HOH HOH A . K 4 HOH 12 304 304 HOH HOH A . K 4 HOH 13 305 305 HOH HOH A . K 4 HOH 14 306 306 HOH HOH A . K 4 HOH 15 307 307 HOH HOH A . K 4 HOH 16 308 308 HOH HOH A . K 4 HOH 17 309 309 HOH HOH A . K 4 HOH 18 310 310 HOH HOH A . K 4 HOH 19 311 311 HOH HOH A . K 4 HOH 20 312 312 HOH HOH A . K 4 HOH 21 313 313 HOH HOH A . K 4 HOH 22 314 314 HOH HOH A . K 4 HOH 23 315 315 HOH HOH A . K 4 HOH 24 316 316 HOH HOH A . K 4 HOH 25 317 317 HOH HOH A . K 4 HOH 26 318 318 HOH HOH A . K 4 HOH 27 319 319 HOH HOH A . K 4 HOH 28 320 320 HOH HOH A . K 4 HOH 29 321 321 HOH HOH A . K 4 HOH 30 322 322 HOH HOH A . K 4 HOH 31 323 323 HOH HOH A . K 4 HOH 32 324 324 HOH HOH A . K 4 HOH 33 325 325 HOH HOH A . K 4 HOH 34 326 326 HOH HOH A . K 4 HOH 35 327 327 HOH HOH A . K 4 HOH 36 328 328 HOH HOH A . K 4 HOH 37 329 329 HOH HOH A . K 4 HOH 38 330 330 HOH HOH A . K 4 HOH 39 331 331 HOH HOH A . K 4 HOH 40 332 332 HOH HOH A . K 4 HOH 41 333 333 HOH HOH A . K 4 HOH 42 334 334 HOH HOH A . K 4 HOH 43 335 335 HOH HOH A . K 4 HOH 44 336 336 HOH HOH A . K 4 HOH 45 337 337 HOH HOH A . K 4 HOH 46 338 338 HOH HOH A . K 4 HOH 47 339 339 HOH HOH A . K 4 HOH 48 340 340 HOH HOH A . K 4 HOH 49 341 341 HOH HOH A . K 4 HOH 50 342 342 HOH HOH A . K 4 HOH 51 343 343 HOH HOH A . K 4 HOH 52 344 344 HOH HOH A . K 4 HOH 53 345 345 HOH HOH A . K 4 HOH 54 346 346 HOH HOH A . K 4 HOH 55 347 347 HOH HOH A . K 4 HOH 56 348 348 HOH HOH A . K 4 HOH 57 349 349 HOH HOH A . K 4 HOH 58 350 350 HOH HOH A . K 4 HOH 59 351 351 HOH HOH A . K 4 HOH 60 352 352 HOH HOH A . K 4 HOH 61 353 353 HOH HOH A . K 4 HOH 62 354 354 HOH HOH A . K 4 HOH 63 355 355 HOH HOH A . K 4 HOH 64 356 356 HOH HOH A . K 4 HOH 65 357 357 HOH HOH A . K 4 HOH 66 358 358 HOH HOH A . K 4 HOH 67 359 359 HOH HOH A . K 4 HOH 68 360 360 HOH HOH A . K 4 HOH 69 361 361 HOH HOH A . K 4 HOH 70 362 362 HOH HOH A . K 4 HOH 71 363 363 HOH HOH A . K 4 HOH 72 364 364 HOH HOH A . K 4 HOH 73 365 365 HOH HOH A . K 4 HOH 74 366 366 HOH HOH A . K 4 HOH 75 367 367 HOH HOH A . K 4 HOH 76 368 368 HOH HOH A . K 4 HOH 77 369 369 HOH HOH A . K 4 HOH 78 370 370 HOH HOH A . K 4 HOH 79 371 371 HOH HOH A . K 4 HOH 80 372 372 HOH HOH A . K 4 HOH 81 373 373 HOH HOH A . K 4 HOH 82 374 374 HOH HOH A . K 4 HOH 83 375 375 HOH HOH A . K 4 HOH 84 376 376 HOH HOH A . K 4 HOH 85 377 377 HOH HOH A . K 4 HOH 86 378 378 HOH HOH A . K 4 HOH 87 379 379 HOH HOH A . K 4 HOH 88 380 380 HOH HOH A . K 4 HOH 89 381 381 HOH HOH A . K 4 HOH 90 382 382 HOH HOH A . K 4 HOH 91 383 383 HOH HOH A . K 4 HOH 92 384 384 HOH HOH A . K 4 HOH 93 385 385 HOH HOH A . K 4 HOH 94 386 386 HOH HOH A . K 4 HOH 95 387 387 HOH HOH A . K 4 HOH 96 388 388 HOH HOH A . K 4 HOH 97 389 389 HOH HOH A . K 4 HOH 98 390 390 HOH HOH A . K 4 HOH 99 391 391 HOH HOH A . K 4 HOH 100 392 392 HOH HOH A . K 4 HOH 101 393 393 HOH HOH A . K 4 HOH 102 394 394 HOH HOH A . K 4 HOH 103 395 395 HOH HOH A . K 4 HOH 104 396 396 HOH HOH A . K 4 HOH 105 397 397 HOH HOH A . K 4 HOH 106 398 398 HOH HOH A . K 4 HOH 107 399 399 HOH HOH A . K 4 HOH 108 400 400 HOH HOH A . K 4 HOH 109 401 401 HOH HOH A . K 4 HOH 110 402 402 HOH HOH A . K 4 HOH 111 403 403 HOH HOH A . K 4 HOH 112 404 404 HOH HOH A . K 4 HOH 113 405 405 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MLY 10 A MLY 32 ? LYS N-DIMETHYL-LYSINE 2 A MLY 17 A MLY 39 ? LYS N-DIMETHYL-LYSINE 3 A MSE 28 A MSE 50 ? MET SELENOMETHIONINE 4 A MSE 34 A MSE 56 ? MET SELENOMETHIONINE 5 A MLY 37 A MLY 59 ? LYS N-DIMETHYL-LYSINE 6 A MLY 62 A MLY 84 ? LYS N-DIMETHYL-LYSINE 7 A MLY 67 A MLY 89 ? LYS N-DIMETHYL-LYSINE 8 A MLY 71 A MLY 93 ? LYS N-DIMETHYL-LYSINE 9 A MSE 83 A MSE 105 ? MET SELENOMETHIONINE 10 A MLY 86 A MLY 108 ? LYS N-DIMETHYL-LYSINE 11 A MLY 91 A MLY 113 ? LYS N-DIMETHYL-LYSINE 12 A MLY 104 A MLY 126 ? LYS N-DIMETHYL-LYSINE 13 A MLY 108 A MLY 130 ? LYS N-DIMETHYL-LYSINE 14 A MSE 115 A MSE 137 ? MET SELENOMETHIONINE 15 A MLY 139 A MLY 161 ? LYS N-DIMETHYL-LYSINE 16 A MLY 159 A MLY 181 ? LYS N-DIMETHYL-LYSINE 17 A MLY 163 A MLY 185 ? LYS N-DIMETHYL-LYSINE 18 A MLY 175 A MLY 197 ? LYS N-DIMETHYL-LYSINE 19 A MSE 189 A MSE 211 ? MET SELENOMETHIONINE 20 A MLY 200 A MLY 222 ? LYS N-DIMETHYL-LYSINE 21 A MLY 210 A MLY 232 ? LYS N-DIMETHYL-LYSINE 22 A MLY 245 A MLY 267 ? LYS N-DIMETHYL-LYSINE 23 A MSE 249 A MSE 271 ? MET SELENOMETHIONINE 24 A MSE 256 A MSE 278 ? MET SELENOMETHIONINE 25 A MLY 258 A MLY 280 ? LYS N-DIMETHYL-LYSINE 26 A MLY 260 A MLY 282 ? LYS N-DIMETHYL-LYSINE 27 A MLY 261 A MLY 283 ? LYS N-DIMETHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-07-20 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2014-12-24 6 'Structure model' 1 5 2017-11-08 7 'Structure model' 1 6 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Structure summary' 5 6 'Structure model' 'Refinement description' 6 7 'Structure model' 'Database references' 7 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' software 2 7 'Structure model' database_2 3 7 'Structure model' struct_conn 4 7 'Structure model' struct_ref_seq_dif 5 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_software.classification' 2 6 'Structure model' '_software.name' 3 7 'Structure model' '_database_2.pdbx_DOI' 4 7 'Structure model' '_database_2.pdbx_database_accession' 5 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 7 'Structure model' '_struct_ref_seq_dif.details' 7 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -3.7376 _pdbx_refine_tls.origin_y 64.5712 _pdbx_refine_tls.origin_z 18.9293 _pdbx_refine_tls.T[1][1] 0.0714 _pdbx_refine_tls.T[2][2] 0.0789 _pdbx_refine_tls.T[3][3] 0.0119 _pdbx_refine_tls.T[1][2] -0.0086 _pdbx_refine_tls.T[1][3] 0.0180 _pdbx_refine_tls.T[2][3] -0.0054 _pdbx_refine_tls.L[1][1] 1.2861 _pdbx_refine_tls.L[2][2] 1.6515 _pdbx_refine_tls.L[3][3] 0.2133 _pdbx_refine_tls.L[1][2] 1.2738 _pdbx_refine_tls.L[1][3] 0.1648 _pdbx_refine_tls.L[2][3] 0.1112 _pdbx_refine_tls.S[1][1] -0.0482 _pdbx_refine_tls.S[2][2] 0.0511 _pdbx_refine_tls.S[3][3] -0.0029 _pdbx_refine_tls.S[1][2] 0.0351 _pdbx_refine_tls.S[1][3] -0.0523 _pdbx_refine_tls.S[2][3] -0.0077 _pdbx_refine_tls.S[2][1] -0.0231 _pdbx_refine_tls.S[3][1] 0.0500 _pdbx_refine_tls.S[3][2] -0.0138 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 30 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 283 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 6, 2010' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.5.0110 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 3RWX _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;1. THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING GLY 0 FOLLOWED BY RESIDUES 24-283 OF THE TARGET SEQUENCE. 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 109 ? ? -62.13 79.41 2 1 SER A 229 ? ? -135.03 -44.64 3 1 ASN A 238 ? ? -156.51 86.75 4 1 SER A 258 ? ? 72.70 -2.45 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MLY 59 ? CE ? A MLY 37 CE 2 1 Y 1 A MLY 59 ? NZ ? A MLY 37 NZ 3 1 Y 1 A MLY 59 ? CH1 ? A MLY 37 CH1 4 1 Y 1 A MLY 59 ? CH2 ? A MLY 37 CH2 5 1 Y 1 A SER 92 ? OG ? A SER 70 OG 6 1 Y 1 A ASP 107 ? CG ? A ASP 85 CG 7 1 Y 1 A ASP 107 ? OD1 ? A ASP 85 OD1 8 1 Y 1 A ASP 107 ? OD2 ? A ASP 85 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ASN 24 ? A ASN 2 3 1 Y 1 A ASN 25 ? A ASN 3 4 1 Y 1 A ASP 26 ? A ASP 4 5 1 Y 1 A ASP 27 ? A ASP 5 6 1 Y 1 A ASP 28 ? A ASP 6 7 1 Y 1 A GLY 29 ? A GLY 7 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH #