HEADER MOTOR PROTEIN 13-MAY-11 3S06 TITLE THE CRYSTAL STRUCTURE OF THE PERIPLASMIC DOMAIN OF HELICOBACTER PYLORI TITLE 2 MOTB (RESIDUES 97-256, P3121). COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOTILITY PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL FRAGMENT (UNP RESIDUES 98-257); COMPND 5 SYNONYM: CHEMOTAXIS PROTEIN MOTB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 GENE: HP_0816, MOTB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-151-D-TOPO KEYWDS PEPTIDOGLYCAN BINDING, FLAGELLAR ROTATION, CHEMOTAXIS, BACTERIAL KEYWDS 2 FLAGELLAR MOTOR, MEMBRANE, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.ROUJEINIKOVA REVDAT 2 28-FEB-24 3S06 1 REMARK SEQADV REVDAT 1 14-MAR-12 3S06 0 JRNL AUTH J.O'NEILL,M.XIE,M.HIJNEN,A.ROUJEINIKOVA JRNL TITL ROLE OF THE MOTB LINKER IN THE ASSEMBLY AND ACTIVATION OF JRNL TITL 2 THE BACTERIAL FLAGELLAR MOTOR. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 67 1009 2011 JRNL REFN ISSN 0907-4449 JRNL PMID 22120737 JRNL DOI 10.1107/S0907444911041102 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.O'NEILL,A.ROUJEINIKOVA REMARK 1 TITL CLONING, PURIFICATION AND CRYSTALLIZATION OF MOTB, A STATOR REMARK 1 TITL 2 COMPONENT OF THE PROTON-DRIVEN BACTERIAL FLAGELLAR MOTOR. REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 38287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1916 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2652 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.2110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2469 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 403 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.701 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2818 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3863 ; 1.325 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 5.833 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;35.493 ;24.748 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 518 ;13.520 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.324 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2217 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1737 ; 0.709 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2875 ; 1.344 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1081 ; 2.285 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 979 ; 3.852 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 252 REMARK 3 ORIGIN FOR THE GROUP (A): -30.551 16.727 -36.771 REMARK 3 T TENSOR REMARK 3 T11: 0.0148 T22: 0.0406 REMARK 3 T33: 0.0222 T12: -0.0014 REMARK 3 T13: 0.0060 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.1653 L22: 0.6183 REMARK 3 L33: 0.9298 L12: 0.0940 REMARK 3 L13: 0.2155 L23: 0.3380 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.0098 S13: -0.0460 REMARK 3 S21: -0.0441 S22: 0.0293 S23: -0.0264 REMARK 3 S31: -0.0397 S32: 0.0028 S33: -0.0161 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 105 B 250 REMARK 3 ORIGIN FOR THE GROUP (A): -31.8040 17.8530 -53.2570 REMARK 3 T TENSOR REMARK 3 T11: 0.0324 T22: 0.0433 REMARK 3 T33: 0.0146 T12: 0.0071 REMARK 3 T13: -0.0097 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.9650 L22: 0.4653 REMARK 3 L33: 0.7209 L12: 0.2090 REMARK 3 L13: 0.5143 L23: -0.1950 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: 0.0953 S13: -0.0470 REMARK 3 S21: -0.0173 S22: 0.0418 S23: 0.0403 REMARK 3 S31: 0.0047 S32: 0.0037 S33: -0.0339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3S06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38287 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 61.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BICINE PH 9.0, 2 M AMMONIUM REMARK 280 SULPHATE , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.80700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.61400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 95.61400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.80700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -95.61400 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 87 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 253 REMARK 465 GLN A 254 REMARK 465 GLN A 255 REMARK 465 GLU A 256 REMARK 465 GLY B 91 REMARK 465 ILE B 92 REMARK 465 ASP B 93 REMARK 465 PRO B 94 REMARK 465 PHE B 95 REMARK 465 THR B 96 REMARK 465 ALA B 97 REMARK 465 THR B 98 REMARK 465 ILE B 99 REMARK 465 ALA B 100 REMARK 465 ARG B 101 REMARK 465 LYS B 102 REMARK 465 GLY B 103 REMARK 465 GLU B 104 REMARK 465 HIS B 252 REMARK 465 LYS B 253 REMARK 465 GLN B 254 REMARK 465 GLN B 255 REMARK 465 GLU B 256 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 165 O HOH A 433 1.92 REMARK 500 OG SER B 106 O HOH B 354 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 265 O HOH B 417 6454 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 124 -47.60 -132.31 REMARK 500 ASP A 164 -163.67 -102.73 REMARK 500 ASP A 165 33.04 -95.31 REMARK 500 ASP A 234 45.06 -106.69 REMARK 500 SER B 106 -34.92 -35.60 REMARK 500 SER B 106 -48.81 -2.46 REMARK 500 ASP B 234 46.50 -91.84 REMARK 500 ASP B 234 47.44 -92.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S02 RELATED DB: PDB REMARK 900 RELATED ID: 3S03 RELATED DB: PDB REMARK 900 RELATED ID: 3S0H RELATED DB: PDB REMARK 900 RELATED ID: 3S0W RELATED DB: PDB REMARK 900 RELATED ID: 3S0Y RELATED DB: PDB DBREF 3S06 A 97 256 UNP P56427 MOTB_HELPY 98 257 DBREF 3S06 B 97 256 UNP P56427 MOTB_HELPY 98 257 SEQADV 3S06 GLY A 91 UNP P56427 EXPRESSION TAG SEQADV 3S06 ILE A 92 UNP P56427 EXPRESSION TAG SEQADV 3S06 ASP A 93 UNP P56427 EXPRESSION TAG SEQADV 3S06 PRO A 94 UNP P56427 EXPRESSION TAG SEQADV 3S06 PHE A 95 UNP P56427 EXPRESSION TAG SEQADV 3S06 THR A 96 UNP P56427 EXPRESSION TAG SEQADV 3S06 GLY B 91 UNP P56427 EXPRESSION TAG SEQADV 3S06 ILE B 92 UNP P56427 EXPRESSION TAG SEQADV 3S06 ASP B 93 UNP P56427 EXPRESSION TAG SEQADV 3S06 PRO B 94 UNP P56427 EXPRESSION TAG SEQADV 3S06 PHE B 95 UNP P56427 EXPRESSION TAG SEQADV 3S06 THR B 96 UNP P56427 EXPRESSION TAG SEQRES 1 A 166 GLY ILE ASP PRO PHE THR ALA THR ILE ALA ARG LYS GLY SEQRES 2 A 166 GLU GLY SER VAL LEU GLU GLN ILE ASP GLN GLY SER ILE SEQRES 3 A 166 LEU LYS LEU PRO SER ASN LEU LEU PHE GLU ASN ALA THR SEQRES 4 A 166 SER ASP ALA ILE ASN GLN ASP MET MET LEU TYR ILE GLU SEQRES 5 A 166 ARG ILE ALA LYS ILE ILE GLN LYS LEU PRO LYS ARG VAL SEQRES 6 A 166 HIS ILE ASN VAL ARG GLY PHE THR ASP ASP THR PRO LEU SEQRES 7 A 166 VAL LYS THR ARG PHE LYS SER HIS TYR GLU LEU ALA ALA SEQRES 8 A 166 ASN ARG ALA TYR ARG VAL MET LYS VAL LEU ILE GLN TYR SEQRES 9 A 166 GLY VAL ASN PRO ASN GLN LEU SER PHE SER SER TYR GLY SEQRES 10 A 166 SER THR ASN PRO ILE ALA PRO ASN ASP SER LEU GLU ASN SEQRES 11 A 166 ARG MET LYS ASN ASN ARG VAL GLU ILE PHE PHE SER THR SEQRES 12 A 166 ASP ALA ASN ASP LEU SER LYS ILE HIS SER ILE LEU ASP SEQRES 13 A 166 ASN GLU PHE ASN PRO HIS LYS GLN GLN GLU SEQRES 1 B 166 GLY ILE ASP PRO PHE THR ALA THR ILE ALA ARG LYS GLY SEQRES 2 B 166 GLU GLY SER VAL LEU GLU GLN ILE ASP GLN GLY SER ILE SEQRES 3 B 166 LEU LYS LEU PRO SER ASN LEU LEU PHE GLU ASN ALA THR SEQRES 4 B 166 SER ASP ALA ILE ASN GLN ASP MET MET LEU TYR ILE GLU SEQRES 5 B 166 ARG ILE ALA LYS ILE ILE GLN LYS LEU PRO LYS ARG VAL SEQRES 6 B 166 HIS ILE ASN VAL ARG GLY PHE THR ASP ASP THR PRO LEU SEQRES 7 B 166 VAL LYS THR ARG PHE LYS SER HIS TYR GLU LEU ALA ALA SEQRES 8 B 166 ASN ARG ALA TYR ARG VAL MET LYS VAL LEU ILE GLN TYR SEQRES 9 B 166 GLY VAL ASN PRO ASN GLN LEU SER PHE SER SER TYR GLY SEQRES 10 B 166 SER THR ASN PRO ILE ALA PRO ASN ASP SER LEU GLU ASN SEQRES 11 B 166 ARG MET LYS ASN ASN ARG VAL GLU ILE PHE PHE SER THR SEQRES 12 B 166 ASP ALA ASN ASP LEU SER LYS ILE HIS SER ILE LEU ASP SEQRES 13 B 166 ASN GLU PHE ASN PRO HIS LYS GLN GLN GLU HET SO4 B 1 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *403(H2 O) HELIX 1 1 ASP A 93 ILE A 99 1 7 HELIX 2 2 PRO A 120 LEU A 124 5 5 HELIX 3 3 ASN A 134 ASP A 136 5 3 HELIX 4 4 MET A 137 ILE A 148 1 12 HELIX 5 5 GLN A 149 LEU A 151 5 3 HELIX 6 6 SER A 175 TYR A 194 1 20 HELIX 7 7 ASN A 197 ASN A 199 5 3 HELIX 8 8 SER A 217 ASN A 225 1 9 HELIX 9 9 ASN A 236 ASN A 250 1 15 HELIX 10 10 SER B 121 PHE B 125 1 5 HELIX 11 11 ASN B 134 ASP B 136 5 3 HELIX 12 12 MET B 137 LEU B 151 1 15 HELIX 13 13 SER B 175 TYR B 194 1 20 HELIX 14 14 ASN B 197 ASN B 199 5 3 HELIX 15 15 SER B 217 ASN B 225 1 9 HELIX 16 16 ASN B 236 ASN B 250 1 15 SHEET 1 A 5 LEU A 108 ILE A 111 0 SHEET 2 A 5 GLY A 114 LEU A 119 -1 O ILE A 116 N GLU A 109 SHEET 3 A 5 VAL A 227 SER A 232 -1 O PHE A 231 N SER A 115 SHEET 4 A 5 HIS A 156 ASP A 164 -1 N HIS A 156 O SER A 232 SHEET 5 A 5 LEU A 201 ASN A 210 1 O SER A 204 N VAL A 159 SHEET 1 B 5 LEU B 108 ILE B 111 0 SHEET 2 B 5 GLY B 114 PRO B 120 -1 O ILE B 116 N GLU B 109 SHEET 3 B 5 ARG B 226 SER B 232 -1 O VAL B 227 N LEU B 119 SHEET 4 B 5 HIS B 156 PHE B 162 -1 N ARG B 160 O GLU B 228 SHEET 5 B 5 LEU B 201 SER B 205 1 O SER B 204 N GLY B 161 SITE 1 AC1 8 LYS B 170 THR B 171 ASN B 197 ASN B 199 SITE 2 AC1 8 HOH B 268 HOH B 283 HOH B 325 HOH B 374 CRYST1 70.714 70.714 143.421 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014142 0.008165 0.000000 0.00000 SCALE2 0.000000 0.016329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006972 0.00000