HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 16-MAY-11 3S25 TITLE CRYSTAL STRUCTURE OF A 7-BLADED BETA-PROPELLER-LIKE PROTEIN TITLE 2 (EUBREC_1955) FROM EUBACTERIUM RECTALE ATCC 33656 AT 1.88 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL 7-BLADED BETA-PROPELLER-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EUBACTERIUM RECTALE; SOURCE 3 ORGANISM_TAXID: 515619; SOURCE 4 STRAIN: ATCC 33656; SOURCE 5 ATCC: 33656; SOURCE 6 GENE: ERE_32420, EUBREC_1955; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS 7-BLADED BETA-PROPELLER, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 24-JAN-18 3S25 1 JRNL REVDAT 5 08-NOV-17 3S25 1 REMARK REVDAT 4 24-DEC-14 3S25 1 TITLE REVDAT 3 16-NOV-11 3S25 1 TITLE REVDAT 2 20-JUL-11 3S25 1 TITLE REVDAT 1 08-JUN-11 3S25 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL 7-BLADED JRNL TITL 2 BETA-PROPELLER-LIKE PROTEIN (EUBREC_1955, ERE_32420) FROM JRNL TITL 3 EUBACTERIUM RECTALE AT 1.88 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 30369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2064 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2374 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.307 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2584 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1704 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3515 ; 1.473 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4140 ; 0.886 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 6.264 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;35.220 ;24.795 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;12.611 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.825 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 373 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2967 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 554 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1530 ; 1.897 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 621 ; 0.511 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2492 ; 3.062 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1054 ; 4.446 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1010 ; 6.272 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5981 35.8191 9.6073 REMARK 3 T TENSOR REMARK 3 T11: 0.0127 T22: 0.0110 REMARK 3 T33: 0.0287 T12: -0.0038 REMARK 3 T13: 0.0081 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.8224 L22: 1.4632 REMARK 3 L33: 1.5444 L12: -0.0973 REMARK 3 L13: -0.2549 L23: -0.2917 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: -0.0509 S13: 0.1021 REMARK 3 S21: 0.0718 S22: -0.0079 S23: 0.0474 REMARK 3 S31: 0.0078 S32: -0.0746 S33: -0.0373 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5.1,2-ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT SOLUTION HAS BEEN REMARK 3 MODELED IN THE SOLVENT STRUCTURE. 6.THE RAMACHANDRAN OUTLIER AT REMARK 3 RESIDUE 323 IS SUPPORTED BY ELECTRON DENSITY. REMARK 4 REMARK 4 3S25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96109,0.97929,0.97907 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15, XSCALE DECEMBER 6, REMARK 200 2010 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30369 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 41.949 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02800 REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40600 REMARK 200 R SYM FOR SHELL (I) : 0.40600 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: WHILE DATA WERE SCALED WITH XSCALE, THE FINAL STATISTICS REMARK 200 REPORTED IN THE REMARK 200 SECTION HAVE BEEN CALCULATED WITH REMARK 200 SCALA WITH FIXED SCALES AND NO SD CORRECTION REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0% POLYETHYLENE GLYCOL 6000, 0.1M REMARK 280 MES PH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.32450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.32450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.94600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.32450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.32450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.94600 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 59.32450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 59.32450 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 26.94600 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 59.32450 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 59.32450 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.94600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGEST THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 103 REMARK 465 LYS A 104 REMARK 465 ILE A 105 REMARK 465 THR A 106 REMARK 465 SER A 107 REMARK 465 GLN A 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 ASN A 244 CG OD1 ND2 REMARK 470 GLN A 329 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 -123.61 48.61 REMARK 500 ASN A 45 35.49 -99.21 REMARK 500 ASP A 91 -166.98 -126.08 REMARK 500 ASP A 184 -133.80 55.42 REMARK 500 ASN A 254 43.38 73.45 REMARK 500 ASN A 254 43.96 73.04 REMARK 500 ASN A 312 11.46 57.03 REMARK 500 ASN A 312 12.72 56.00 REMARK 500 ASP A 323 -73.36 -163.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 342 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390003 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 30-330) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3S25 A 30 330 UNP C4ZBG5 C4ZBG5_EUBR3 30 330 SEQADV 3S25 GLY A 0 UNP C4ZBG5 EXPRESSION TAG SEQRES 1 A 302 GLY LEU ASN SER SER TYR VAL ASN GLY ASN THR ALA GLY SEQRES 2 A 302 ASN LEU TYR ASN ALA GLY LEU PHE CYS GLU SER ASP GLY SEQRES 3 A 302 GLU VAL PHE PHE SER ASN THR ASN ASP ASN GLY ARG LEU SEQRES 4 A 302 TYR ALA MSE ASN ILE ASP GLY SER ASN ILE HIS LYS LEU SEQRES 5 A 302 SER ASN ASP THR ALA MSE TYR ILE ASN ALA ASP LYS ASN SEQRES 6 A 302 TYR VAL TYR TYR VAL ARG ASN ASN ASN GLN LYS ILE THR SEQRES 7 A 302 SER GLN THR PHE PHE SER TYR ASP ARG ASN SER LEU CYS SEQRES 8 A 302 ARG ILE LYS ARG ASN GLY HIS GLY SER THR VAL LEU ASP SEQRES 9 A 302 PRO ASP PRO CYS ILE TYR ALA SER LEU ILE GLY ASN TYR SEQRES 10 A 302 ILE TYR TYR LEU HIS TYR ASP THR GLN THR ALA THR SER SEQRES 11 A 302 LEU TYR ARG ILE ARG ILE ASP GLY GLU GLU LYS LYS LYS SEQRES 12 A 302 ILE LYS ASN HIS TYR LEU PHE THR CYS ASN THR SER ASP SEQRES 13 A 302 ARG TYR PHE TYR TYR ASN ASN PRO LYS ASN GLY GLN LEU SEQRES 14 A 302 TYR ARG TYR ASP THR ALA SER GLN SER GLU ALA LEU PHE SEQRES 15 A 302 TYR ASP CYS ASN CYS TYR LYS PRO VAL VAL LEU ASP ASP SEQRES 16 A 302 THR ASN VAL TYR TYR MSE ASP VAL ASN ARG ASP ASN ALA SEQRES 17 A 302 ILE VAL HIS VAL ASN ILE ASN ASN PRO ASN PRO VAL VAL SEQRES 18 A 302 LEU THR GLU ALA ASN ILE GLU HIS TYR ASN VAL TYR GLY SEQRES 19 A 302 SER LEU ILE PHE TYR GLN ARG GLY GLY ASP ASN PRO ALA SEQRES 20 A 302 LEU CYS VAL VAL LYS ASN ASP GLY THR GLY PHE LYS GLU SEQRES 21 A 302 LEU ALA LYS GLY GLU PHE CYS ASN ILE ASN VAL THR SER SEQRES 22 A 302 GLN TYR VAL TYR PHE THR ASP PHE VAL SER ASN LYS GLU SEQRES 23 A 302 TYR CYS THR SER THR GLN ASN PRO ASP THR ILE LYS ALA SEQRES 24 A 302 LEU GLN PRO MODRES 3S25 MSE A 70 MET SELENOMETHIONINE MODRES 3S25 MSE A 86 MET SELENOMETHIONINE MODRES 3S25 MSE A 229 MET SELENOMETHIONINE HET MSE A 70 8 HET MSE A 86 8 HET MSE A 229 8 HET EDO A 331 4 HET EDO A 332 4 HET EDO A 333 4 HET EDO A 334 4 HET EDO A 335 4 HET EDO A 337 4 HET EDO A 338 4 HET EDO A 339 4 HET EDO A 340 4 HET EDO A 341 4 HET EDO A 342 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 EDO 11(C2 H6 O2) FORMUL 13 HOH *162(H2 O) HELIX 1 1 ASN A 42 ALA A 46 5 5 HELIX 2 2 THR A 61 ASN A 64 5 4 HELIX 3 3 ASN A 232 ASP A 234 5 3 SHEET 1 A 7 PHE A 49 SER A 52 0 SHEET 2 A 7 GLU A 55 SER A 59 -1 O PHE A 57 N CYS A 50 SHEET 3 A 7 ARG A 66 ASN A 71 -1 O TYR A 68 N PHE A 58 SHEET 4 A 7 HIS A 78 ALA A 90 -1 O HIS A 78 N ALA A 69 SHEET 5 A 7 TYR A 94 ASN A 100 -1 O VAL A 98 N MSE A 86 SHEET 6 A 7 ASN A 116 LYS A 122 -1 O CYS A 119 N TYR A 97 SHEET 7 A 7 THR A 129 ASP A 132 -1 O ASP A 132 N LEU A 118 SHEET 1 B 4 CYS A 136 ILE A 142 0 SHEET 2 B 4 TYR A 145 TYR A 151 -1 O TYR A 145 N ILE A 142 SHEET 3 B 4 THR A 157 ARG A 163 -1 O ILE A 162 N ILE A 146 SHEET 4 B 4 LYS A 170 LYS A 173 -1 O ILE A 172 N LEU A 159 SHEET 1 C 4 ASN A 181 SER A 183 0 SHEET 2 C 4 TYR A 186 ASN A 190 -1 O TYR A 186 N SER A 183 SHEET 3 C 4 LEU A 197 ASP A 201 -1 O TYR A 200 N PHE A 187 SHEET 4 C 4 SER A 206 TYR A 211 -1 O SER A 206 N ASP A 201 SHEET 1 D 4 CYS A 215 ASP A 222 0 SHEET 2 D 4 ASN A 225 ASP A 230 -1 O ASN A 225 N ASP A 222 SHEET 3 D 4 ILE A 237 VAL A 240 -1 O VAL A 240 N VAL A 226 SHEET 4 D 4 VAL A 248 VAL A 249 -1 O VAL A 248 N HIS A 239 SHEET 1 E 4 ILE A 255 TYR A 261 0 SHEET 2 E 4 LEU A 264 ARG A 269 -1 O GLN A 268 N HIS A 257 SHEET 3 E 4 ALA A 275 LYS A 280 -1 O VAL A 279 N ILE A 265 SHEET 4 E 4 LYS A 287 LYS A 291 -1 O ALA A 290 N LEU A 276 SHEET 1 F 4 PHE A 294 VAL A 299 0 SHEET 2 F 4 TYR A 303 ASP A 308 -1 O TYR A 305 N ASN A 298 SHEET 3 F 4 GLU A 314 SER A 318 -1 O TYR A 315 N PHE A 306 SHEET 4 F 4 LYS A 326 ALA A 327 -1 O LYS A 326 N CYS A 316 LINK C ALA A 69 N MSE A 70 1555 1555 1.32 LINK C MSE A 70 N ASN A 71 1555 1555 1.34 LINK C ALA A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N TYR A 87 1555 1555 1.32 LINK C TYR A 228 N MSE A 229 1555 1555 1.33 LINK C MSE A 229 N ASP A 230 1555 1555 1.33 CISPEP 1 GLN A 329 PRO A 330 0 -11.36 SITE 1 AC1 4 THR A 39 ALA A 40 VAL A 260 GLY A 262 SITE 1 AC2 3 VAL A 35 SER A 52 ASP A 53 SITE 1 AC3 2 PHE A 110 ASN A 312 SITE 1 AC4 7 GLY A 41 TYR A 44 ASN A 45 LYS A 217 SITE 2 AC4 7 HIS A 257 TYR A 258 HOH A 419 SITE 1 AC5 3 LEU A 149 EDO A 337 HOH A 417 SITE 1 AC6 5 TYR A 176 LEU A 177 PHE A 178 ASN A 190 SITE 2 AC6 5 EDO A 335 SITE 1 AC7 4 ASN A 144 TYR A 145 ARG A 163 EDO A 339 SITE 1 AC8 3 SER A 32 EDO A 338 HOH A 401 SITE 1 AC9 3 TYR A 94 ARG A 120 ASP A 165 SITE 1 BC1 2 LYS A 173 ASN A 174 SITE 1 BC2 4 TYR A 160 LYS A 169 LYS A 170 LYS A 171 CRYST1 118.649 118.649 53.892 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008428 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018556 0.00000