HEADER IMMUNE SYSTEM 17-MAY-11 3S34 TITLE STRUCTURE OF THE 1121B FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1121B FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 1121B FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 4 ORGANISM_TAXID: 10090, 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: MAMMALIAN KIDNEY CELLS HEK293; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 11 ORGANISM_TAXID: 10090, 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: MAMMALIAN KIDNEY CELLS HEK293 KEYWDS VEGF RECEPTOR DOMAIN 3, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.C.FRANKLIN REVDAT 3 13-SEP-23 3S34 1 REMARK REVDAT 2 08-NOV-17 3S34 1 SOURCE REMARK REVDAT 1 24-AUG-11 3S34 0 JRNL AUTH M.C.FRANKLIN,E.C.NAVARRO,Y.WANG,S.PATEL,P.SINGH,Y.ZHANG, JRNL AUTH 2 K.PERSAUD,A.BARI,H.GRIFFITH,L.SHEN,P.BALDERES,P.KUSSIE JRNL TITL THE STRUCTURAL BASIS FOR THE FUNCTION OF TWO ANTI-VEGF JRNL TITL 2 RECEPTOR 2 ANTIBODIES. JRNL REF STRUCTURE V. 19 1097 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21827946 JRNL DOI 10.1016/J.STR.2011.01.019 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 25334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1345 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1362 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3223 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.662 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3295 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2202 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4482 ; 1.372 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5377 ; 0.871 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 7.060 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;36.701 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 523 ;15.060 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.116 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3673 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 653 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 470 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2119 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1501 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1808 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 229 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.143 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2689 ; 0.727 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 862 ; 0.127 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3418 ; 0.920 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1414 ; 1.561 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1064 ; 2.152 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 109 REMARK 3 ORIGIN FOR THE GROUP (A): -35.7813 5.8794 10.5047 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: -0.1796 REMARK 3 T33: -0.0313 T12: -0.0416 REMARK 3 T13: -0.0731 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 5.8509 L22: 3.1043 REMARK 3 L33: 5.7578 L12: -2.8257 REMARK 3 L13: 5.1600 L23: -2.3495 REMARK 3 S TENSOR REMARK 3 S11: 0.5257 S12: -0.1763 S13: -0.7325 REMARK 3 S21: -0.1485 S22: 0.0650 S23: 0.4902 REMARK 3 S31: 0.8907 S32: -0.3945 S33: -0.5907 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 110 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2385 19.9889 36.5129 REMARK 3 T TENSOR REMARK 3 T11: -0.2009 T22: -0.1306 REMARK 3 T33: -0.1657 T12: -0.0233 REMARK 3 T13: 0.0194 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 1.3747 L22: 3.7672 REMARK 3 L33: 4.8234 L12: -0.5014 REMARK 3 L13: -0.6238 L23: 2.3569 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.2367 S13: 0.0089 REMARK 3 S21: -0.1166 S22: 0.0832 S23: 0.0206 REMARK 3 S31: -0.2613 S32: 0.1623 S33: -0.1300 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 116 REMARK 3 ORIGIN FOR THE GROUP (A): -35.3639 27.3341 2.5880 REMARK 3 T TENSOR REMARK 3 T11: -0.1744 T22: -0.1916 REMARK 3 T33: -0.1405 T12: 0.0413 REMARK 3 T13: -0.0072 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 2.6929 L22: 2.5273 REMARK 3 L33: 5.5005 L12: -0.5591 REMARK 3 L13: 2.2759 L23: 0.7153 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.0162 S13: 0.2296 REMARK 3 S21: 0.1108 S22: -0.0717 S23: -0.2350 REMARK 3 S31: -0.1236 S32: -0.0370 S33: 0.0764 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 117 H 219 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9240 25.3673 27.3488 REMARK 3 T TENSOR REMARK 3 T11: -0.2099 T22: -0.1127 REMARK 3 T33: -0.1727 T12: -0.0550 REMARK 3 T13: 0.0169 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 4.0639 L22: 6.1219 REMARK 3 L33: 2.2481 L12: 0.5845 REMARK 3 L13: -0.4957 L23: -0.5836 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: -0.3230 S13: -0.2027 REMARK 3 S21: 0.3126 S22: -0.1000 S23: -0.1919 REMARK 3 S31: 0.0693 S32: 0.2202 S33: 0.0576 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3S34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26790 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YY9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA/K PHOSPHATE, PH 5.5, 40% PEG REMARK 280 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.91200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.95600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.95600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 135.91200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 131 REMARK 465 LYS H 132 REMARK 465 SER H 133 REMARK 465 THR H 134 REMARK 465 SER H 135 REMARK 465 GLY H 136 REMARK 465 ALA H 220 REMARK 465 ALA H 221 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU H 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 235 O HOH H 279 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 30 -113.08 60.85 REMARK 500 ALA L 51 -39.96 69.55 REMARK 500 SER L 77 84.35 -154.25 REMARK 500 THR H 100 -83.18 -113.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 H 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S37 RELATED DB: PDB REMARK 900 RELATED ID: 3S36 RELATED DB: PDB DBREF 3S34 L 1 214 PDB 3S34 3S34 1 214 DBREF 3S34 H 1 221 PDB 3S34 3S34 1 221 SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER VAL SER ALA SEQRES 2 L 214 SER ILE GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN GLY ILE ASP ASN TRP LEU GLY TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 214 ASN LEU ASP THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR TYR PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN ALA GLU ASP PHE ALA VAL TYR PHE CYS GLN GLN ALA SEQRES 8 L 214 LYS ALA PHE PRO PRO THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 L 214 ASP ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 221 GLU VAL GLN LEU VAL GLN SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 221 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 221 PHE THR PHE SER SER TYR SER MET ASN TRP VAL ARG GLN SEQRES 4 H 221 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER SER ILE SER SEQRES 5 H 221 SER SER SER SER TYR ILE TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 221 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SER SEQRES 7 H 221 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA ARG VAL THR ASP ALA PHE ASP SEQRES 9 H 221 ILE TRP GLY GLN GLY THR MET VAL THR VAL SER SER ALA SEQRES 10 H 221 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 11 H 221 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 12 H 221 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 13 H 221 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 14 H 221 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 15 H 221 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 16 H 221 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 17 H 221 LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ALA ALA HET PO4 H1001 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *278(H2 O) HELIX 1 1 GLN L 79 PHE L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 LYS L 188 1 6 HELIX 4 4 THR H 28 TYR H 32 5 5 HELIX 5 5 ASN H 74 LYS H 76 5 3 HELIX 6 6 ARG H 87 THR H 91 5 5 HELIX 7 7 SER H 159 ALA H 161 5 3 HELIX 8 8 SER H 190 LEU H 192 5 3 HELIX 9 9 LYS H 204 ASN H 207 5 4 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 A 4 TYR L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 B 6 SER L 10 ALA L 13 0 SHEET 2 B 6 THR L 102 ILE L 106 1 O LYS L 103 N VAL L 11 SHEET 3 B 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 C 4 SER L 10 ALA L 13 0 SHEET 2 C 4 THR L 102 ILE L 106 1 O LYS L 103 N VAL L 11 SHEET 3 C 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 SER L 114 PHE L 118 0 SHEET 2 D 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 D 4 TYR L 173 SER L 182 -1 O SER L 177 N CYS L 134 SHEET 4 D 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 E 4 ALA L 153 LEU L 154 0 SHEET 2 E 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 E 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 E 4 VAL L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 F 4 GLN H 3 GLY H 8 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 F 4 SER H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 F 4 PHE H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 G 6 GLY H 10 VAL H 12 0 SHEET 2 G 6 THR H 110 VAL H 114 1 O MET H 111 N GLY H 10 SHEET 3 G 6 ALA H 92 VAL H 99 -1 N TYR H 94 O THR H 110 SHEET 4 G 6 SER H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 G 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 ILE H 58 TYR H 60 -1 O TYR H 59 N SER H 50 SHEET 1 H 4 GLY H 10 VAL H 12 0 SHEET 2 H 4 THR H 110 VAL H 114 1 O MET H 111 N GLY H 10 SHEET 3 H 4 ALA H 92 VAL H 99 -1 N TYR H 94 O THR H 110 SHEET 4 H 4 PHE H 103 TRP H 106 -1 O ILE H 105 N ARG H 98 SHEET 1 I 4 SER H 123 LEU H 127 0 SHEET 2 I 4 THR H 138 TYR H 148 -1 O LEU H 144 N PHE H 125 SHEET 3 I 4 TYR H 179 PRO H 188 -1 O LEU H 181 N VAL H 145 SHEET 4 I 4 VAL H 166 THR H 168 -1 N HIS H 167 O VAL H 184 SHEET 1 J 4 SER H 123 LEU H 127 0 SHEET 2 J 4 THR H 138 TYR H 148 -1 O LEU H 144 N PHE H 125 SHEET 3 J 4 TYR H 179 PRO H 188 -1 O LEU H 181 N VAL H 145 SHEET 4 J 4 VAL H 172 LEU H 173 -1 N VAL H 172 O SER H 180 SHEET 1 K 3 THR H 154 TRP H 157 0 SHEET 2 K 3 ILE H 198 HIS H 203 -1 O ASN H 200 N SER H 156 SHEET 3 K 3 THR H 208 ARG H 213 -1 O THR H 208 N HIS H 203 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.10 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.00 SSBOND 3 CYS L 214 CYS H 219 1555 1555 2.04 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.16 SSBOND 5 CYS H 143 CYS H 199 1555 1555 2.02 CISPEP 1 SER L 7 PRO L 8 0 -13.84 CISPEP 2 PHE L 94 PRO L 95 0 -2.43 CISPEP 3 TYR L 140 PRO L 141 0 -0.76 CISPEP 4 PHE H 149 PRO H 150 0 -11.02 CISPEP 5 GLU H 151 PRO H 152 0 -5.79 SITE 1 AC1 7 THR H 28 SER H 31 TYR H 32 ASN H 202 SITE 2 AC1 7 LYS H 209 HOH H 266 HOH H 278 CRYST1 66.426 66.426 203.868 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015054 0.008692 0.000000 0.00000 SCALE2 0.000000 0.017383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004905 0.00000