HEADER HYDROLASE/HYDROLASE INHIBITOR 18-MAY-11 3S3K TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PTP10D FROM DROSOPHILA TITLE 2 MELANOGASTER WITH A SMALL MOLECULAR INHIBITOR PARA-NITROCATECHOL TITLE 3 SULPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE 10D; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1250-1533; COMPND 5 SYNONYM: RECEPTOR-LINKED PROTEIN-TYROSINE PHOSPHATASE 10D, DPTP10D; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG1817, PTP10D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DIFFERENTIATION, NEUROGENESIS, SIGNAL TRANSDUCTION, DEVELOPMENTAL KEYWDS 2 PROTEIN, HYDROLASE, PROTEIN PHOSPHATASE, PROTEIN TYROSINE KEYWDS 3 PHOSPHATASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.L.MADAN,B.GOPAL REVDAT 3 01-NOV-23 3S3K 1 REMARK SEQADV REVDAT 2 03-JUL-13 3S3K 1 JRNL REVDAT 1 02-NOV-11 3S3K 0 JRNL AUTH L.L.MADAN,B.GOPAL JRNL TITL CONFORMATIONAL BASIS FOR SUBSTRATE RECRUITMENT IN PROTEIN JRNL TITL 2 TYROSINE PHOSPHATASE 10D JRNL REF BIOCHEMISTRY V. 50 10114 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 22007620 JRNL DOI 10.1021/BI201092Q REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 16355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 880 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4663 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.546 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.391 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 46.825 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.806 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.728 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4815 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6539 ; 1.194 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 570 ; 6.554 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 258 ;35.149 ;22.791 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 765 ;18.990 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;15.940 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 680 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3806 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 21 A 305 4 REMARK 3 1 B 21 B 305 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2252 ; 0.57 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 305 REMARK 3 ORIGIN FOR THE GROUP (A): -34.9203 13.4754 22.5585 REMARK 3 T TENSOR REMARK 3 T11: 0.0049 T22: 0.0282 REMARK 3 T33: 0.1077 T12: 0.0018 REMARK 3 T13: -0.0176 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.3994 L22: 1.4489 REMARK 3 L33: 5.1507 L12: 0.5089 REMARK 3 L13: -0.0493 L23: -0.3029 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.1517 S13: 0.0801 REMARK 3 S21: 0.0221 S22: 0.0114 S23: 0.0495 REMARK 3 S31: 0.0554 S32: -0.1548 S33: -0.0186 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 305 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7373 33.3075 -2.4947 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.0419 REMARK 3 T33: 0.0950 T12: -0.0157 REMARK 3 T13: -0.0083 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 2.0866 L22: 1.4021 REMARK 3 L33: 3.5731 L12: -0.4217 REMARK 3 L13: -0.6141 L23: 0.0882 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: 0.2181 S13: -0.0877 REMARK 3 S21: -0.2373 S22: 0.0294 S23: 0.0433 REMARK 3 S31: 0.1550 S32: -0.1174 S33: -0.0709 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PARAMETERS FOR MASK CACLULATION REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3S3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : BENT COLLIMATING MIRROR WITH REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17564 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.16400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3S3E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 2000, 120MM CITRATE, 10% ISO REMARK 280 -PROPANOL, 10% N-BUTANOL, 10% 1,4-BUTANEDIOL, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.60000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.20000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 115.20000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 GLU A 306 REMARK 465 ASN A 307 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 HIS B 20 REMARK 465 GLU B 306 REMARK 465 ASN B 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 19 OG REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 ASP A 93 OD1 OD2 REMARK 470 ASP A 94 CB CG OD1 OD2 REMARK 470 GLU A 96 CB CG CD OE1 OE2 REMARK 470 SER A 124 OG REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 ARG A 152 CZ NH1 NH2 REMARK 470 SER A 195 CB OG REMARK 470 LYS A 279 CE NZ REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 GLU B 33 CG CD OE1 OE2 REMARK 470 ASP B 41 CB CG OD1 OD2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 PHE B 211 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 236 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS B 279 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 246 O MET A 284 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 158 CE1 TYR A 158 CZ -0.106 REMARK 500 CYS A 242 CB CYS A 242 SG -0.101 REMARK 500 CYS B 242 CB CYS B 242 SG -0.196 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 198 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 CYS A 242 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 LEU B 176 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 20 -33.03 -135.81 REMARK 500 ASP A 41 61.61 60.83 REMARK 500 ARG A 113 51.76 -108.09 REMARK 500 LYS A 150 10.09 58.31 REMARK 500 GLN A 157 99.06 -64.67 REMARK 500 ASN A 177 162.51 173.37 REMARK 500 SER A 195 36.79 -99.91 REMARK 500 CYS A 242 -118.43 -132.29 REMARK 500 SER A 243 -60.77 -93.73 REMARK 500 VAL A 246 -71.84 -126.02 REMARK 500 ILE A 262 13.57 -63.45 REMARK 500 TRP A 283 60.44 14.77 REMARK 500 ALA B 40 -101.53 -64.74 REMARK 500 SER B 42 57.59 30.69 REMARK 500 ARG B 113 52.26 -117.01 REMARK 500 CYS B 155 138.28 -170.93 REMARK 500 ASN B 177 138.27 146.31 REMARK 500 THR B 207 -26.45 -140.91 REMARK 500 PRO B 209 -164.75 -59.50 REMARK 500 PRO B 214 104.92 -46.56 REMARK 500 PRO B 216 79.01 -112.97 REMARK 500 PRO B 217 88.73 -57.39 REMARK 500 GLN B 218 -19.42 -173.27 REMARK 500 GLU B 234 -55.08 74.54 REMARK 500 ARG B 236 -168.12 -123.43 REMARK 500 CYS B 242 -107.84 -130.86 REMARK 500 SER B 243 -71.07 -105.26 REMARK 500 ILE B 262 3.75 -55.22 REMARK 500 THR B 264 -45.33 -139.56 REMARK 500 ASP B 269 72.32 -112.28 REMARK 500 GLU B 303 -86.50 -106.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CSN B 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S3E RELATED DB: PDB REMARK 900 RELATED ID: 3S3F RELATED DB: PDB REMARK 900 RELATED ID: 3S3H RELATED DB: PDB DBREF 3S3K A 24 307 UNP P35992 PTP10_DROME 1250 1533 DBREF 3S3K B 24 307 UNP P35992 PTP10_DROME 1250 1533 SEQADV 3S3K MET A 1 UNP P35992 EXPRESSION TAG SEQADV 3S3K GLY A 2 UNP P35992 EXPRESSION TAG SEQADV 3S3K SER A 3 UNP P35992 EXPRESSION TAG SEQADV 3S3K SER A 4 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS A 5 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS A 6 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS A 7 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS A 8 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS A 9 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS A 10 UNP P35992 EXPRESSION TAG SEQADV 3S3K SER A 11 UNP P35992 EXPRESSION TAG SEQADV 3S3K SER A 12 UNP P35992 EXPRESSION TAG SEQADV 3S3K GLY A 13 UNP P35992 EXPRESSION TAG SEQADV 3S3K LEU A 14 UNP P35992 EXPRESSION TAG SEQADV 3S3K VAL A 15 UNP P35992 EXPRESSION TAG SEQADV 3S3K PRO A 16 UNP P35992 EXPRESSION TAG SEQADV 3S3K ARG A 17 UNP P35992 EXPRESSION TAG SEQADV 3S3K GLY A 18 UNP P35992 EXPRESSION TAG SEQADV 3S3K SER A 19 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS A 20 UNP P35992 EXPRESSION TAG SEQADV 3S3K MET A 21 UNP P35992 EXPRESSION TAG SEQADV 3S3K ALA A 22 UNP P35992 EXPRESSION TAG SEQADV 3S3K SER A 23 UNP P35992 EXPRESSION TAG SEQADV 3S3K MET B 1 UNP P35992 EXPRESSION TAG SEQADV 3S3K GLY B 2 UNP P35992 EXPRESSION TAG SEQADV 3S3K SER B 3 UNP P35992 EXPRESSION TAG SEQADV 3S3K SER B 4 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS B 5 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS B 6 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS B 7 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS B 8 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS B 9 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS B 10 UNP P35992 EXPRESSION TAG SEQADV 3S3K SER B 11 UNP P35992 EXPRESSION TAG SEQADV 3S3K SER B 12 UNP P35992 EXPRESSION TAG SEQADV 3S3K GLY B 13 UNP P35992 EXPRESSION TAG SEQADV 3S3K LEU B 14 UNP P35992 EXPRESSION TAG SEQADV 3S3K VAL B 15 UNP P35992 EXPRESSION TAG SEQADV 3S3K PRO B 16 UNP P35992 EXPRESSION TAG SEQADV 3S3K ARG B 17 UNP P35992 EXPRESSION TAG SEQADV 3S3K GLY B 18 UNP P35992 EXPRESSION TAG SEQADV 3S3K SER B 19 UNP P35992 EXPRESSION TAG SEQADV 3S3K HIS B 20 UNP P35992 EXPRESSION TAG SEQADV 3S3K MET B 21 UNP P35992 EXPRESSION TAG SEQADV 3S3K ALA B 22 UNP P35992 EXPRESSION TAG SEQADV 3S3K SER B 23 UNP P35992 EXPRESSION TAG SEQRES 1 A 307 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 307 LEU VAL PRO ARG GLY SER HIS MET ALA SER ARG PRO ILE SEQRES 3 A 307 LEU ILE LYS ASN PHE ALA GLU HIS TYR ARG LEU MET SER SEQRES 4 A 307 ALA ASP SER ASP PHE ARG PHE SER GLU GLU PHE GLU GLU SEQRES 5 A 307 LEU LYS HIS VAL GLY ARG ASP GLN PRO CYS THR PHE ALA SEQRES 6 A 307 ASP LEU PRO CYS ASN ARG PRO LYS ASN ARG PHE THR ASN SEQRES 7 A 307 ILE LEU PRO TYR ASP HIS SER ARG PHE LYS LEU GLN PRO SEQRES 8 A 307 VAL ASP ASP ASP GLU GLY SER ASP TYR ILE ASN ALA ASN SEQRES 9 A 307 TYR VAL PRO GLY HIS ASN SER PRO ARG GLU PHE ILE VAL SEQRES 10 A 307 THR GLN GLY PRO LEU HIS SER THR ARG ASP ASP PHE TRP SEQRES 11 A 307 ARG MET CYS TRP GLU SER ASN SER ARG ALA ILE VAL MET SEQRES 12 A 307 LEU THR ARG CYS PHE GLU LYS GLY ARG GLU LYS CYS ASP SEQRES 13 A 307 GLN TYR TRP PRO ASN ASP THR VAL PRO VAL PHE TYR GLY SEQRES 14 A 307 ASP ILE LYS VAL GLN ILE LEU ASN ASP SER HIS TYR ALA SEQRES 15 A 307 ASP TRP VAL MET THR GLU PHE MET LEU CYS ARG GLY SER SEQRES 16 A 307 GLU GLN ARG ILE LEU ARG HIS PHE HIS PHE THR THR TRP SEQRES 17 A 307 PRO ASP PHE GLY VAL PRO ASN PRO PRO GLN THR LEU VAL SEQRES 18 A 307 ARG PHE VAL ARG ALA PHE ARG ASP ARG ILE GLY ALA GLU SEQRES 19 A 307 GLN ARG PRO ILE VAL VAL HIS CYS SER ALA GLY VAL GLY SEQRES 20 A 307 ARG SER GLY THR PHE ILE THR LEU ASP ARG ILE LEU GLN SEQRES 21 A 307 GLN ILE ASN THR SER ASP TYR VAL ASP ILE PHE GLY ILE SEQRES 22 A 307 VAL TYR ALA MET ARG LYS GLU ARG VAL TRP MET VAL GLN SEQRES 23 A 307 THR GLU GLN GLN TYR ILE CYS ILE HIS GLN CYS LEU LEU SEQRES 24 A 307 ALA VAL LEU GLU GLY LYS GLU ASN SEQRES 1 B 307 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 307 LEU VAL PRO ARG GLY SER HIS MET ALA SER ARG PRO ILE SEQRES 3 B 307 LEU ILE LYS ASN PHE ALA GLU HIS TYR ARG LEU MET SER SEQRES 4 B 307 ALA ASP SER ASP PHE ARG PHE SER GLU GLU PHE GLU GLU SEQRES 5 B 307 LEU LYS HIS VAL GLY ARG ASP GLN PRO CYS THR PHE ALA SEQRES 6 B 307 ASP LEU PRO CYS ASN ARG PRO LYS ASN ARG PHE THR ASN SEQRES 7 B 307 ILE LEU PRO TYR ASP HIS SER ARG PHE LYS LEU GLN PRO SEQRES 8 B 307 VAL ASP ASP ASP GLU GLY SER ASP TYR ILE ASN ALA ASN SEQRES 9 B 307 TYR VAL PRO GLY HIS ASN SER PRO ARG GLU PHE ILE VAL SEQRES 10 B 307 THR GLN GLY PRO LEU HIS SER THR ARG ASP ASP PHE TRP SEQRES 11 B 307 ARG MET CYS TRP GLU SER ASN SER ARG ALA ILE VAL MET SEQRES 12 B 307 LEU THR ARG CYS PHE GLU LYS GLY ARG GLU LYS CYS ASP SEQRES 13 B 307 GLN TYR TRP PRO ASN ASP THR VAL PRO VAL PHE TYR GLY SEQRES 14 B 307 ASP ILE LYS VAL GLN ILE LEU ASN ASP SER HIS TYR ALA SEQRES 15 B 307 ASP TRP VAL MET THR GLU PHE MET LEU CYS ARG GLY SER SEQRES 16 B 307 GLU GLN ARG ILE LEU ARG HIS PHE HIS PHE THR THR TRP SEQRES 17 B 307 PRO ASP PHE GLY VAL PRO ASN PRO PRO GLN THR LEU VAL SEQRES 18 B 307 ARG PHE VAL ARG ALA PHE ARG ASP ARG ILE GLY ALA GLU SEQRES 19 B 307 GLN ARG PRO ILE VAL VAL HIS CYS SER ALA GLY VAL GLY SEQRES 20 B 307 ARG SER GLY THR PHE ILE THR LEU ASP ARG ILE LEU GLN SEQRES 21 B 307 GLN ILE ASN THR SER ASP TYR VAL ASP ILE PHE GLY ILE SEQRES 22 B 307 VAL TYR ALA MET ARG LYS GLU ARG VAL TRP MET VAL GLN SEQRES 23 B 307 THR GLU GLN GLN TYR ILE CYS ILE HIS GLN CYS LEU LEU SEQRES 24 B 307 ALA VAL LEU GLU GLY LYS GLU ASN HET CSN B 308 15 HETNAM CSN N,4-DIHYDROXY-N-OXO-3-(SULFOOXY)BENZENAMINIUM FORMUL 3 CSN C6 H5 N O7 S FORMUL 4 HOH *26(H2 O) HELIX 1 1 ASN A 30 GLU A 51 1 22 HELIX 2 2 GLU A 52 VAL A 56 5 5 HELIX 3 3 THR A 63 ASN A 74 5 12 HELIX 4 4 THR A 125 ASN A 137 1 13 HELIX 5 5 PRO A 217 GLY A 232 1 16 HELIX 6 6 VAL A 246 ILE A 262 1 17 HELIX 7 7 ASP A 269 LYS A 279 1 11 HELIX 8 8 THR A 287 GLU A 303 1 17 HELIX 9 9 ASN B 30 SER B 39 1 10 HELIX 10 10 ASP B 43 GLU B 52 1 10 HELIX 11 11 THR B 63 ASN B 74 5 12 HELIX 12 12 TYR B 82 HIS B 84 5 3 HELIX 13 13 ASP B 95 SER B 98 5 4 HELIX 14 14 THR B 125 SER B 136 1 12 HELIX 15 15 GLN B 218 ILE B 231 1 14 HELIX 16 16 GLY B 247 ILE B 262 1 16 HELIX 17 17 ASP B 269 ARG B 278 1 10 HELIX 18 18 THR B 287 GLY B 304 1 18 SHEET 1 A 2 ILE A 26 LEU A 27 0 SHEET 2 A 2 TYR A 267 VAL A 268 -1 O VAL A 268 N ILE A 26 SHEET 1 B 8 ALA A 103 VAL A 106 0 SHEET 2 B 8 PHE A 115 THR A 118 -1 O VAL A 117 N ASN A 104 SHEET 3 B 8 ILE A 238 HIS A 241 1 O ILE A 238 N ILE A 116 SHEET 4 B 8 ALA A 140 MET A 143 1 N VAL A 142 O HIS A 241 SHEET 5 B 8 GLN A 197 PHE A 205 1 O PHE A 203 N ILE A 141 SHEET 6 B 8 TRP A 184 CYS A 192 -1 N LEU A 191 O ARG A 198 SHEET 7 B 8 ILE A 171 HIS A 180 -1 N LEU A 176 O GLU A 188 SHEET 8 B 8 VAL A 166 TYR A 168 -1 N TYR A 168 O ILE A 171 SHEET 1 C 2 PHE A 148 GLU A 149 0 SHEET 2 C 2 ARG A 152 GLU A 153 -1 O ARG A 152 N GLU A 149 SHEET 1 D 2 ILE B 26 LEU B 27 0 SHEET 2 D 2 TYR B 267 VAL B 268 -1 O VAL B 268 N ILE B 26 SHEET 1 E 9 ARG B 86 LYS B 88 0 SHEET 2 E 9 TYR B 100 VAL B 106 -1 O ALA B 103 N PHE B 87 SHEET 3 E 9 PHE B 115 THR B 118 -1 O PHE B 115 N VAL B 106 SHEET 4 E 9 ILE B 238 HIS B 241 1 O VAL B 240 N THR B 118 SHEET 5 E 9 ALA B 140 MET B 143 1 N VAL B 142 O VAL B 239 SHEET 6 E 9 GLU B 196 PHE B 205 1 O PHE B 203 N ILE B 141 SHEET 7 E 9 TRP B 184 ARG B 193 -1 N LEU B 191 O ARG B 198 SHEET 8 E 9 ILE B 171 HIS B 180 -1 N SER B 179 O MET B 186 SHEET 9 E 9 VAL B 166 TYR B 168 -1 N TYR B 168 O ILE B 171 SHEET 1 F 2 PHE B 148 GLU B 149 0 SHEET 2 F 2 ARG B 152 GLU B 153 -1 O ARG B 152 N GLU B 149 CISPEP 1 ASN A 215 PRO A 216 0 11.36 CISPEP 2 ALA B 233 GLU B 234 0 -11.14 CISPEP 3 ARG B 236 PRO B 237 0 -3.94 SITE 1 AC1 9 LYS B 154 CYS B 242 SER B 243 ALA B 244 SITE 2 AC1 9 GLY B 245 VAL B 246 ARG B 248 GLN B 286 SITE 3 AC1 9 HOH B 309 CRYST1 102.510 102.510 172.800 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009755 0.005632 0.000000 0.00000 SCALE2 0.000000 0.011264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005787 0.00000