HEADER ISOMERASE 18-MAY-11 3S46 TITLE THE CRYSTAL STRUCTURE OF ALANINE RACEMASE FROM STREPTOCOCCUS TITLE 2 PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 STRAIN: R800; SOURCE 5 GENE: ALAR, ALR, SP_1698; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17 KEYWDS ALPHA/BETA BARREL, EXTENDED BETA-STRAND DOMAIN, PYRIDOXAL PHOSPHATE KEYWDS 2 COFACTOR, ALANINE RACEMASE, CARBAMYLATED LYSINE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.IM,M.L.SHARPE,U.STRYCH,M.DAVLIEVA,K.L.KRAUSE REVDAT 4 06-DEC-23 3S46 1 REMARK REVDAT 3 01-NOV-23 3S46 1 REMARK LINK REVDAT 2 08-NOV-17 3S46 1 REMARK REVDAT 1 22-JUN-11 3S46 0 SPRSDE 22-JUN-11 3S46 3MUB JRNL AUTH H.IM,M.L.SHARPE,U.STRYCH,M.DAVLIEVA,K.L.KRAUSE JRNL TITL THE CRYSTAL STRUCTURE OF ALANINE RACEMASE FROM STREPTOCOCCUS JRNL TITL 2 PNEUMONIAE, A TARGET FOR STRUCTURE-BASED DRUG DESIGN. JRNL REF BMC MICROBIOL. V. 11 116 2011 JRNL REFN ESSN 1471-2180 JRNL PMID 21612658 JRNL DOI 10.1186/1471-2180-11-116 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 63336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3379 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4412 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5638 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 507 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.274 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5758 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7837 ; 1.448 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 732 ; 5.731 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;38.010 ;24.938 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 953 ;13.905 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.374 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 917 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4311 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3646 ; 0.668 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5874 ; 1.186 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2112 ; 2.035 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1962 ; 3.082 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 367 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7980 64.3680 -19.1930 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.2189 REMARK 3 T33: 0.3094 T12: 0.0561 REMARK 3 T13: -0.0476 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 1.4797 L22: 0.3420 REMARK 3 L33: 1.2513 L12: 0.1629 REMARK 3 L13: 0.4969 L23: -0.0940 REMARK 3 S TENSOR REMARK 3 S11: -0.1776 S12: 0.1654 S13: 0.1991 REMARK 3 S21: -0.0308 S22: -0.0144 S23: -0.0338 REMARK 3 S31: -0.2291 S32: 0.1903 S33: 0.1920 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 367 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2140 64.6770 -1.3690 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.4070 REMARK 3 T33: 0.2788 T12: 0.2197 REMARK 3 T13: -0.0577 T23: -0.1185 REMARK 3 L TENSOR REMARK 3 L11: 1.7892 L22: 0.4369 REMARK 3 L33: 1.3413 L12: 0.1244 REMARK 3 L13: 0.6816 L23: -0.0277 REMARK 3 S TENSOR REMARK 3 S11: -0.2014 S12: -0.5622 S13: 0.2217 REMARK 3 S21: 0.0233 S22: -0.0116 S23: 0.0513 REMARK 3 S31: -0.2549 S32: -0.4431 S33: 0.2130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3S46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66748 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 23.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1SFT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M NA CITRATE, 0.1M MES, 10% REMARK 280 GLYCEROL, PH 7.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.36633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.73267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.73267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.36633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 39 C LLP A 40 N 0.177 REMARK 500 LLP A 40 C ALA A 41 N 0.211 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 19 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 347 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LLP A 40 152.19 -39.14 REMARK 500 GLU A 118 49.78 -92.61 REMARK 500 ARG A 136 -77.77 -101.86 REMARK 500 THR A 168 31.42 -141.49 REMARK 500 ALA A 200 -16.31 -153.64 REMARK 500 PHE A 214 -122.68 -94.75 REMARK 500 SER A 247 -156.29 -151.61 REMARK 500 ASN A 292 -3.14 76.54 REMARK 500 THR A 349 -159.41 -136.74 REMARK 500 GLU B 91 28.45 -73.09 REMARK 500 ASP B 100 65.69 74.04 REMARK 500 ARG B 136 -78.84 -98.60 REMARK 500 ALA B 200 -10.61 -146.01 REMARK 500 PHE B 214 -118.80 -94.36 REMARK 500 SER B 247 -159.96 -150.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ A 369 DBREF 3S46 A 1 367 UNP P0A2W8 ALR_STRPN 1 367 DBREF 3S46 B 1 367 UNP P0A2W8 ALR_STRPN 1 367 SEQRES 1 A 367 MET LYS ALA SER PRO HIS ARG PRO THR LYS ALA LEU ILE SEQRES 2 A 367 HIS LEU GLY ALA ILE ARG GLN ASN ILE GLN GLN MET GLY SEQRES 3 A 367 ALA HIS ILE PRO GLN GLY THR LEU LYS LEU ALA VAL VAL SEQRES 4 A 367 LLP ALA ASN ALA TYR GLY HIS GLY ALA VAL ALA VAL ALA SEQRES 5 A 367 LYS ALA ILE GLN ASP ASP VAL ASP GLY PHE CYS VAL SER SEQRES 6 A 367 ASN ILE ASP GLU ALA ILE GLU LEU ARG GLN ALA GLY LEU SEQRES 7 A 367 SER LYS PRO ILE LEU ILE LEU GLY VAL SER GLU ILE GLU SEQRES 8 A 367 ALA VAL ALA LEU ALA LYS GLU TYR ASP PHE THR LEU THR SEQRES 9 A 367 VAL ALA GLY LEU GLU TRP ILE GLN ALA LEU LEU ASP LYS SEQRES 10 A 367 GLU VAL ASP LEU THR GLY LEU THR VAL HIS LEU KCX ILE SEQRES 11 A 367 ASP SER GLY MET GLY ARG ILE GLY PHE ARG GLU ALA SER SEQRES 12 A 367 GLU VAL GLU GLN ALA GLN ASP LEU LEU GLN GLN HIS GLY SEQRES 13 A 367 VAL CYS VAL GLU GLY ILE PHE THR HIS PHE ALA THR ALA SEQRES 14 A 367 ASP GLU GLU SER ASP ASP TYR PHE ASN ALA GLN LEU GLU SEQRES 15 A 367 ARG PHE LYS THR ILE LEU ALA SER MET LYS GLU VAL PRO SEQRES 16 A 367 GLU LEU VAL HIS ALA SER ASN SER ALA THR THR LEU TRP SEQRES 17 A 367 HIS VAL GLU THR ILE PHE ASN ALA VAL ARG MET GLY ASP SEQRES 18 A 367 ALA MET TYR GLY LEU ASN PRO SER GLY ALA VAL LEU ASP SEQRES 19 A 367 LEU PRO TYR ASP LEU ILE PRO ALA LEU THR LEU GLU SER SEQRES 20 A 367 ALA LEU VAL HIS VAL LYS THR VAL PRO ALA GLY ALA CYS SEQRES 21 A 367 MET GLY TYR GLY ALA THR TYR GLN ALA ASP SER GLU GLN SEQRES 22 A 367 VAL ILE ALA THR VAL PRO ILE GLY TYR ALA ASP GLY TRP SEQRES 23 A 367 THR ARG ASP MET GLN ASN PHE SER VAL LEU VAL ASP GLY SEQRES 24 A 367 GLN ALA CYS PRO ILE VAL GLY ARG VAL SER MET ASP GLN SEQRES 25 A 367 ILE THR ILE ARG LEU PRO LYS LEU TYR PRO LEU GLY THR SEQRES 26 A 367 LYS VAL THR LEU ILE GLY SER ASN GLY ASP LYS GLU ILE SEQRES 27 A 367 THR ALA THR GLN VAL ALA THR TYR ARG VAL THR ILE ASN SEQRES 28 A 367 TYR GLU VAL VAL CYS LEU LEU SER ASP ARG ILE PRO ARG SEQRES 29 A 367 GLU TYR TYR SEQRES 1 B 367 MET LYS ALA SER PRO HIS ARG PRO THR LYS ALA LEU ILE SEQRES 2 B 367 HIS LEU GLY ALA ILE ARG GLN ASN ILE GLN GLN MET GLY SEQRES 3 B 367 ALA HIS ILE PRO GLN GLY THR LEU LYS LEU ALA VAL VAL SEQRES 4 B 367 LLP ALA ASN ALA TYR GLY HIS GLY ALA VAL ALA VAL ALA SEQRES 5 B 367 LYS ALA ILE GLN ASP ASP VAL ASP GLY PHE CYS VAL SER SEQRES 6 B 367 ASN ILE ASP GLU ALA ILE GLU LEU ARG GLN ALA GLY LEU SEQRES 7 B 367 SER LYS PRO ILE LEU ILE LEU GLY VAL SER GLU ILE GLU SEQRES 8 B 367 ALA VAL ALA LEU ALA LYS GLU TYR ASP PHE THR LEU THR SEQRES 9 B 367 VAL ALA GLY LEU GLU TRP ILE GLN ALA LEU LEU ASP LYS SEQRES 10 B 367 GLU VAL ASP LEU THR GLY LEU THR VAL HIS LEU KCX ILE SEQRES 11 B 367 ASP SER GLY MET GLY ARG ILE GLY PHE ARG GLU ALA SER SEQRES 12 B 367 GLU VAL GLU GLN ALA GLN ASP LEU LEU GLN GLN HIS GLY SEQRES 13 B 367 VAL CYS VAL GLU GLY ILE PHE THR HIS PHE ALA THR ALA SEQRES 14 B 367 ASP GLU GLU SER ASP ASP TYR PHE ASN ALA GLN LEU GLU SEQRES 15 B 367 ARG PHE LYS THR ILE LEU ALA SER MET LYS GLU VAL PRO SEQRES 16 B 367 GLU LEU VAL HIS ALA SER ASN SER ALA THR THR LEU TRP SEQRES 17 B 367 HIS VAL GLU THR ILE PHE ASN ALA VAL ARG MET GLY ASP SEQRES 18 B 367 ALA MET TYR GLY LEU ASN PRO SER GLY ALA VAL LEU ASP SEQRES 19 B 367 LEU PRO TYR ASP LEU ILE PRO ALA LEU THR LEU GLU SER SEQRES 20 B 367 ALA LEU VAL HIS VAL LYS THR VAL PRO ALA GLY ALA CYS SEQRES 21 B 367 MET GLY TYR GLY ALA THR TYR GLN ALA ASP SER GLU GLN SEQRES 22 B 367 VAL ILE ALA THR VAL PRO ILE GLY TYR ALA ASP GLY TRP SEQRES 23 B 367 THR ARG ASP MET GLN ASN PHE SER VAL LEU VAL ASP GLY SEQRES 24 B 367 GLN ALA CYS PRO ILE VAL GLY ARG VAL SER MET ASP GLN SEQRES 25 B 367 ILE THR ILE ARG LEU PRO LYS LEU TYR PRO LEU GLY THR SEQRES 26 B 367 LYS VAL THR LEU ILE GLY SER ASN GLY ASP LYS GLU ILE SEQRES 27 B 367 THR ALA THR GLN VAL ALA THR TYR ARG VAL THR ILE ASN SEQRES 28 B 367 TYR GLU VAL VAL CYS LEU LEU SER ASP ARG ILE PRO ARG SEQRES 29 B 367 GLU TYR TYR MODRES 3S46 LLP A 40 LYS MODRES 3S46 KCX A 129 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 3S46 LLP B 40 LYS MODRES 3S46 KCX B 129 LYS LYSINE NZ-CARBOXYLIC ACID HET LLP A 40 24 HET KCX A 129 12 HET LLP B 40 24 HET KCX B 129 12 HET BEZ A 369 9 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM BEZ BENZOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 BEZ C7 H6 O2 FORMUL 4 HOH *507(H2 O) HELIX 1 1 LEU A 15 HIS A 28 1 14 HELIX 2 2 VAL A 39 GLY A 45 1 7 HELIX 3 3 GLY A 47 GLN A 56 1 10 HELIX 4 4 ASP A 57 VAL A 59 5 3 HELIX 5 5 ASN A 66 ALA A 76 1 11 HELIX 6 6 GLU A 89 GLU A 91 5 3 HELIX 7 7 ALA A 92 TYR A 99 1 8 HELIX 8 8 GLY A 107 LYS A 117 1 11 HELIX 9 9 GLU A 141 HIS A 155 1 15 HELIX 10 10 ASP A 174 SER A 190 1 17 HELIX 11 11 ASN A 202 HIS A 209 1 8 HELIX 12 12 VAL A 210 ILE A 213 5 4 HELIX 13 13 GLY A 220 GLY A 225 5 6 HELIX 14 14 GLY A 262 THR A 266 5 5 HELIX 15 15 GLY A 281 GLY A 285 5 5 HELIX 16 16 THR A 287 GLN A 291 5 5 HELIX 17 17 THR A 339 VAL A 348 1 10 HELIX 18 18 ILE A 350 LEU A 357 1 8 HELIX 19 19 LEU B 15 HIS B 28 1 14 HELIX 20 20 VAL B 39 GLY B 45 1 7 HELIX 21 21 GLY B 47 GLN B 56 1 10 HELIX 22 22 ASP B 57 VAL B 59 5 3 HELIX 23 23 ASN B 66 GLY B 77 1 12 HELIX 24 24 GLU B 89 GLU B 91 5 3 HELIX 25 25 ALA B 92 ASP B 100 1 9 HELIX 26 26 GLY B 107 LYS B 117 1 11 HELIX 27 27 GLU B 141 HIS B 155 1 15 HELIX 28 28 ASP B 174 MET B 191 1 18 HELIX 29 29 ASN B 202 HIS B 209 1 8 HELIX 30 30 VAL B 210 ILE B 213 5 4 HELIX 31 31 GLY B 262 THR B 266 5 5 HELIX 32 32 GLY B 281 GLY B 285 5 5 HELIX 33 33 THR B 287 GLN B 291 5 5 HELIX 34 34 THR B 339 VAL B 348 1 10 HELIX 35 35 ILE B 350 LEU B 357 1 8 SHEET 1 A 5 LYS A 336 ILE A 338 0 SHEET 2 A 5 LYS A 326 ASN A 333 -1 N GLY A 331 O ILE A 338 SHEET 3 A 5 LEU A 243 ALA A 248 -1 N LEU A 245 O LEU A 329 SHEET 4 A 5 LYS A 10 HIS A 14 -1 N LYS A 10 O GLU A 246 SHEET 5 A 5 ARG A 364 TYR A 367 1 O TYR A 367 N ILE A 13 SHEET 1 B 9 LEU A 34 VAL A 38 0 SHEET 2 B 9 GLY A 61 VAL A 64 1 O GLY A 61 N ALA A 37 SHEET 3 B 9 ILE A 82 VAL A 87 1 O LEU A 85 N VAL A 64 SHEET 4 B 9 THR A 102 VAL A 105 1 O THR A 102 N ILE A 84 SHEET 5 B 9 THR A 125 ILE A 130 1 O HIS A 127 N VAL A 105 SHEET 6 B 9 CYS A 158 THR A 164 1 O PHE A 163 N ILE A 130 SHEET 7 B 9 LEU A 197 SER A 201 1 O LEU A 197 N GLU A 160 SHEET 8 B 9 ALA A 216 MET A 219 1 O ARG A 218 N SER A 201 SHEET 9 B 9 LEU A 34 VAL A 38 1 N VAL A 38 O MET A 219 SHEET 1 C 3 HIS A 251 VAL A 255 0 SHEET 2 C 3 GLN A 273 VAL A 278 -1 O GLN A 273 N VAL A 255 SHEET 3 C 3 ILE A 313 LEU A 317 -1 O ILE A 315 N ALA A 276 SHEET 1 D 2 CYS A 260 MET A 261 0 SHEET 2 D 2 TYR A 267 GLN A 268 -1 O TYR A 267 N MET A 261 SHEET 1 E 2 SER A 294 VAL A 297 0 SHEET 2 E 2 GLN A 300 PRO A 303 -1 O CYS A 302 N VAL A 295 SHEET 1 F 5 LYS B 336 ILE B 338 0 SHEET 2 F 5 LYS B 326 ASN B 333 -1 N ASN B 333 O LYS B 336 SHEET 3 F 5 LEU B 243 ALA B 248 -1 N SER B 247 O VAL B 327 SHEET 4 F 5 LYS B 10 HIS B 14 -1 N LYS B 10 O GLU B 246 SHEET 5 F 5 ARG B 364 TYR B 367 1 O GLU B 365 N ILE B 13 SHEET 1 G 9 LEU B 34 VAL B 38 0 SHEET 2 G 9 GLY B 61 VAL B 64 1 O CYS B 63 N ALA B 37 SHEET 3 G 9 ILE B 82 ILE B 84 1 O LEU B 83 N PHE B 62 SHEET 4 G 9 THR B 102 VAL B 105 1 O THR B 102 N ILE B 82 SHEET 5 G 9 THR B 125 KCX B 129 1 O KCX B 129 N VAL B 105 SHEET 6 G 9 CYS B 158 PHE B 163 1 O GLY B 161 N LEU B 128 SHEET 7 G 9 LEU B 197 SER B 201 1 O LEU B 197 N ILE B 162 SHEET 8 G 9 ALA B 216 MET B 219 1 O ARG B 218 N SER B 201 SHEET 9 G 9 LEU B 34 VAL B 38 1 N LEU B 36 O VAL B 217 SHEET 1 H 3 HIS B 251 VAL B 255 0 SHEET 2 H 3 GLN B 273 VAL B 278 -1 O THR B 277 N HIS B 251 SHEET 3 H 3 ILE B 313 LEU B 317 -1 O ILE B 315 N ALA B 276 SHEET 1 I 2 CYS B 260 MET B 261 0 SHEET 2 I 2 TYR B 267 GLN B 268 -1 O TYR B 267 N MET B 261 SHEET 1 J 2 SER B 294 VAL B 297 0 SHEET 2 J 2 GLN B 300 PRO B 303 -1 O CYS B 302 N VAL B 295 LINK C LLP A 40 N ALA A 41 1555 1555 1.55 LINK C LEU A 128 N KCX A 129 1555 1555 1.34 LINK C KCX A 129 N ILE A 130 1555 1555 1.33 LINK C LLP B 40 N ALA B 41 1555 1555 1.34 LINK C LEU B 128 N KCX B 129 1555 1555 1.33 LINK C KCX B 129 N ILE B 130 1555 1555 1.33 SITE 1 AC1 9 HIS A 28 ILE A 29 PRO A 30 GLU B 141 SITE 2 AC1 9 ALA B 142 ARG B 183 THR B 186 HOH B 393 SITE 3 AC1 9 HOH B 453 CRYST1 119.973 119.973 118.099 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008335 0.004812 0.000000 0.00000 SCALE2 0.000000 0.009625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008467 0.00000