HEADER TRANSPORT PROTEIN 20-MAY-11 3S4U TITLE CRYSTAL STRUCTURE OF OPEN, UNLIGANDED E. COLI PHND H157A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHND, SUBUNIT OF ALKYLPHOSPHONATE ABC TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-338; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 364106; SOURCE 4 STRAIN: UTI89 / UPEC; SOURCE 5 GENE: PHND, UTI89_C4699; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSPORT PROTEIN, PHOSPHONATE BINDING, GLOBULAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.ALICEA,E.R.SCHREITER REVDAT 3 28-FEB-24 3S4U 1 SEQADV REVDAT 2 21-DEC-11 3S4U 1 JRNL REVDAT 1 12-OCT-11 3S4U 0 JRNL AUTH I.ALICEA,J.S.MARVIN,A.E.MIKLOS,A.D.ELLINGTON,L.L.LOOGER, JRNL AUTH 2 E.R.SCHREITER JRNL TITL STRUCTURE OF THE ESCHERICHIA COLI PHOSPHONATE BINDING JRNL TITL 2 PROTEIN PHND AND RATIONALLY OPTIMIZED PHOSPHONATE JRNL TITL 3 BIOSENSORS. JRNL REF J.MOL.BIOL. V. 414 356 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 22019591 JRNL DOI 10.1016/J.JMB.2011.09.047 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0111 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 4867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 237 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 290 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.61000 REMARK 3 B22 (A**2) : 1.61000 REMARK 3 B33 (A**2) : -3.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.676 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.532 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 70.628 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.824 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2406 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1631 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3259 ; 1.819 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4008 ; 1.009 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 9.577 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;44.238 ;25.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 426 ;24.167 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.052 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2676 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 457 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8360 -27.1620 -5.5710 REMARK 3 T TENSOR REMARK 3 T11: 0.0193 T22: 0.0423 REMARK 3 T33: 0.0879 T12: 0.0178 REMARK 3 T13: 0.0034 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.9669 L22: 1.2098 REMARK 3 L33: 2.3700 L12: 0.1130 REMARK 3 L13: -0.7312 L23: -0.5079 REMARK 3 S TENSOR REMARK 3 S11: 0.0764 S12: -0.1064 S13: -0.0947 REMARK 3 S21: -0.1012 S22: -0.0889 S23: -0.0279 REMARK 3 S31: 0.1236 S32: 0.3100 S33: 0.0124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3S4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5123 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER FOR MR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M TRIS, REMARK 280 PH 8.5, 25% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.86750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.86750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.21100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.86750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.86750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.21100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.86750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.86750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.21100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.86750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.86750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.21100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 103.73500 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 103.73500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLU A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 VAL A 307 REMARK 465 SER A 308 REMARK 465 LYS A 309 REMARK 465 ALA A 310 REMARK 465 VAL A 311 REMARK 465 GLN A 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 101 O LYS A 191 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 247 O ALA A 303 7555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 210 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 82.48 95.17 REMARK 500 GLU A 15 93.03 -69.83 REMARK 500 SER A 16 -120.47 -64.48 REMARK 500 GLN A 18 -72.61 -68.89 REMARK 500 LYS A 21 -66.16 146.92 REMARK 500 ASP A 46 154.24 171.25 REMARK 500 ARG A 55 -14.26 -46.46 REMARK 500 ASN A 57 -1.20 56.68 REMARK 500 ALA A 62 151.00 177.86 REMARK 500 ALA A 76 32.54 -151.19 REMARK 500 SER A 90 -179.91 76.62 REMARK 500 PRO A 91 19.42 -141.17 REMARK 500 ASP A 102 7.12 -69.51 REMARK 500 PRO A 104 46.89 -85.51 REMARK 500 ASN A 106 -25.27 -148.09 REMARK 500 ASP A 110 -73.04 -42.77 REMARK 500 LYS A 114 33.94 -64.72 REMARK 500 ASN A 126 45.84 -108.58 REMARK 500 PHE A 131 -54.17 -122.42 REMARK 500 LYS A 150 -77.07 4.63 REMARK 500 ALA A 155 -176.70 -171.45 REMARK 500 ASP A 170 -74.05 -65.79 REMARK 500 ASP A 180 -72.87 -56.65 REMARK 500 LYS A 181 -56.58 -29.15 REMARK 500 ALA A 186 60.26 -155.82 REMARK 500 ASN A 212 14.05 -64.71 REMARK 500 LEU A 213 -167.38 -74.80 REMARK 500 GLU A 233 -70.83 -55.49 REMARK 500 ASN A 272 105.32 -59.79 REMARK 500 LYS A 280 -82.44 -66.96 REMARK 500 LEU A 281 -60.48 -7.35 REMARK 500 ALA A 289 -63.04 -21.69 REMARK 500 SER A 305 -78.09 -40.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 13 THR A 14 149.04 REMARK 500 SER A 147 ASP A 148 -147.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3P7I RELATED DB: PDB REMARK 900 THE SAME STRUCTURE BUT WITHOUT LIGAND BOUND DBREF 3S4U A 1 312 UNP Q1R3F7 Q1R3F7_ECOUT 27 338 SEQADV 3S4U MET A -8 UNP Q1R3F7 EXPRESSION TAG SEQADV 3S4U HIS A -7 UNP Q1R3F7 EXPRESSION TAG SEQADV 3S4U HIS A -6 UNP Q1R3F7 EXPRESSION TAG SEQADV 3S4U HIS A -5 UNP Q1R3F7 EXPRESSION TAG SEQADV 3S4U HIS A -4 UNP Q1R3F7 EXPRESSION TAG SEQADV 3S4U HIS A -3 UNP Q1R3F7 EXPRESSION TAG SEQADV 3S4U HIS A -2 UNP Q1R3F7 EXPRESSION TAG SEQADV 3S4U GLY A -1 UNP Q1R3F7 EXPRESSION TAG SEQADV 3S4U SER A 0 UNP Q1R3F7 EXPRESSION TAG SEQADV 3S4U ALA A 157 UNP Q1R3F7 HIS 183 ENGINEERED MUTATION SEQRES 1 A 321 MET HIS HIS HIS HIS HIS HIS GLY SER GLU GLU GLN GLU SEQRES 2 A 321 LYS ALA LEU ASN PHE GLY ILE ILE SER THR GLU SER GLN SEQRES 3 A 321 GLN ASN LEU LYS PRO GLN TRP THR PRO PHE LEU GLN ASP SEQRES 4 A 321 MET GLU LYS LYS LEU GLY VAL LYS VAL ASN ALA PHE PHE SEQRES 5 A 321 ALA PRO ASP TYR ALA GLY ILE ILE GLN GLY MET ARG PHE SEQRES 6 A 321 ASN LYS VAL ASP ILE ALA TRP TYR GLY ASN LEU SER ALA SEQRES 7 A 321 MET GLU ALA VAL ASP ARG ALA ASN GLY GLN VAL PHE ALA SEQRES 8 A 321 GLN THR VAL ALA ALA ASP GLY SER PRO GLY TYR TRP SER SEQRES 9 A 321 VAL LEU ILE VAL ASN LYS ASP SER PRO ILE ASN ASN LEU SEQRES 10 A 321 ASN ASP LEU LEU ALA LYS ARG LYS ASP LEU THR PHE GLY SEQRES 11 A 321 ASN GLY ASP PRO ASN SER THR SER GLY PHE LEU VAL PRO SEQRES 12 A 321 GLY TYR TYR VAL PHE ALA LYS ASN ASN ILE SER ALA SER SEQRES 13 A 321 ASP PHE LYS ARG THR VAL ASN ALA GLY ALA GLU THR ASN SEQRES 14 A 321 ALA LEU ALA VAL ALA ASN LYS GLN VAL ASP VAL ALA THR SEQRES 15 A 321 ASN ASN THR GLU ASN LEU ASP LYS LEU LYS THR SER ALA SEQRES 16 A 321 PRO GLU LYS LEU LYS GLU LEU LYS VAL ILE TRP LYS SER SEQRES 17 A 321 PRO LEU ILE PRO GLY ASP PRO ILE VAL TRP ARG LYS ASN SEQRES 18 A 321 LEU SER GLU THR THR LYS ASP LYS ILE TYR ASP PHE PHE SEQRES 19 A 321 MET ASN TYR GLY LYS THR PRO GLU GLU LYS ALA VAL LEU SEQRES 20 A 321 GLU ARG LEU GLY TRP ALA PRO PHE ARG ALA SER SER ASP SEQRES 21 A 321 LEU GLN LEU VAL PRO ILE ARG GLN LEU ALA LEU PHE LYS SEQRES 22 A 321 GLU MET GLN SER VAL LYS ASP ASN LYS GLY LEU ASN GLU SEQRES 23 A 321 GLN ASP LYS LEU ALA LYS THR THR ALA ILE GLN ALA GLN SEQRES 24 A 321 LEU ASP ASP LEU ASP ARG LEU ASN ASN ALA LEU SER ALA SEQRES 25 A 321 MET SER SER VAL SER LYS ALA VAL GLN HELIX 1 1 TRP A 24 LEU A 35 1 12 HELIX 2 2 ASP A 46 PHE A 56 1 11 HELIX 3 3 GLY A 65 ASN A 77 1 13 HELIX 4 4 ASN A 107 LYS A 114 1 8 HELIX 5 5 PHE A 131 VAL A 138 1 8 HELIX 6 6 PHE A 139 ASN A 143 5 5 HELIX 7 7 SER A 145 PHE A 149 5 5 HELIX 8 8 GLY A 156 ASN A 166 1 11 HELIX 9 9 THR A 176 ALA A 186 1 11 HELIX 10 10 ALA A 186 LYS A 191 1 6 HELIX 11 11 SER A 214 TYR A 228 1 15 HELIX 12 12 THR A 231 ARG A 240 1 10 HELIX 13 13 SER A 250 GLN A 253 5 4 HELIX 14 14 LEU A 254 ASP A 271 1 18 HELIX 15 15 ASN A 276 MET A 304 1 29 SHEET 1 A 2 LEU A 7 GLY A 10 0 SHEET 2 A 2 VAL A 39 PHE A 42 1 O PHE A 42 N PHE A 9 SHEET 1 B 4 ILE A 61 TRP A 63 0 SHEET 2 B 4 PRO A 206 ARG A 210 -1 O VAL A 208 N ALA A 62 SHEET 3 B 4 GLY A 78 ALA A 86 -1 N ALA A 82 O ILE A 207 SHEET 4 B 4 TRP A 243 ALA A 248 -1 O ALA A 244 N VAL A 85 SHEET 1 C 5 ARG A 151 ASN A 154 0 SHEET 2 C 5 THR A 119 ASN A 122 1 N ASN A 122 O VAL A 153 SHEET 3 C 5 VAL A 171 ASN A 175 1 O THR A 173 N GLY A 121 SHEET 4 C 5 GLY A 92 ASN A 100 -1 N VAL A 96 O ASN A 174 SHEET 5 C 5 LEU A 193 PRO A 203 -1 O ILE A 202 N TYR A 93 CISPEP 1 SER A 90 PRO A 91 0 -18.38 CISPEP 2 SER A 305 SER A 306 0 -4.47 CRYST1 103.735 103.735 58.422 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009640 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009640 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017117 0.00000