HEADER HYDROLASE/DNA 25-MAY-11 3S6I TITLE SCHIZOSACCAROMYCES POMBE 3-METHYLADENINE DNA GLYCOSYLASE (MAG1) IN TITLE 2 COMPLEX WITH ABASIC-DNA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-3-METHYLADENINE GLYCOSYLASE 1; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: 3-METHYLADENINE DNA GLYCOSIDASE 1, 3MEA DNA GLYCOSYLASE 1; COMPND 5 EC: 3.2.2.21; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: (5'-D(*TP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*T)-3'); COMPND 9 CHAIN: B, E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: (5'-D(*AP*AP*GP*AP*CP*TP*TP*GP*GP*AP*C)-3'); COMPND 13 CHAIN: C, F; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: ATCC 38366 / 972; SOURCE 6 GENE: MAG1, SPAPB24D3.04C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PBG100; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: SYNTHETIC CONSTRUCT; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: SYNTHETIC CONSTRUCT KEYWDS DNA GLYCOSYLASE, DNA REPAIR, HELIX-HAIRPIN-HELIX (HHH), ABASIC SITE, KEYWDS 2 TETRAHYDROFURAN (THF), HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.ADHIKARY,B.F.EICHMAN REVDAT 2 28-FEB-24 3S6I 1 REMARK LINK REVDAT 1 14-DEC-11 3S6I 0 JRNL AUTH S.ADHIKARY,B.F.EICHMAN JRNL TITL ANALYSIS OF SUBSTRATE SPECIFICITY OF SCHIZOSACCHAROMYCES JRNL TITL 2 POMBE MAG1 ALKYLPURINE DNA GLYCOSYLASE. JRNL REF EMBO REP. V. 12 1286 2011 JRNL REFN ISSN 1469-221X JRNL PMID 21960007 JRNL DOI 10.1038/EMBOR.2011.189 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 32188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1056 - 5.2038 0.98 2607 151 0.1681 0.2009 REMARK 3 2 5.2038 - 4.1342 1.00 2628 132 0.1460 0.1764 REMARK 3 3 4.1342 - 3.6127 1.00 2626 139 0.1537 0.1824 REMARK 3 4 3.6127 - 3.2829 1.00 2623 131 0.1671 0.2429 REMARK 3 5 3.2829 - 3.0479 1.00 2625 127 0.1911 0.2085 REMARK 3 6 3.0479 - 2.8683 1.00 2616 136 0.1981 0.2699 REMARK 3 7 2.8683 - 2.7248 1.00 2610 148 0.2102 0.2456 REMARK 3 8 2.7248 - 2.6063 1.00 2604 145 0.2084 0.2623 REMARK 3 9 2.6063 - 2.5060 1.00 2602 141 0.2060 0.2346 REMARK 3 10 2.5060 - 2.4196 1.00 2601 147 0.1979 0.2754 REMARK 3 11 2.4196 - 2.3439 0.99 2544 148 0.2039 0.2625 REMARK 3 12 2.3439 - 2.2770 0.71 1871 86 0.2176 0.2383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 42.38 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.640 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.17520 REMARK 3 B22 (A**2) : -2.35520 REMARK 3 B33 (A**2) : 9.53040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.09570 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4196 REMARK 3 ANGLE : 1.185 5864 REMARK 3 CHIRALITY : 0.068 663 REMARK 3 PLANARITY : 0.005 605 REMARK 3 DIHEDRAL : 21.870 1577 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 17:74) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0920 -10.5090 -6.6375 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.2013 REMARK 3 T33: 0.2239 T12: 0.0272 REMARK 3 T13: 0.0031 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 1.8103 L22: 2.3258 REMARK 3 L33: 0.6831 L12: -1.0922 REMARK 3 L13: 0.4704 L23: -0.6199 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: 0.3957 S13: -0.0581 REMARK 3 S21: 0.0060 S22: -0.0918 S23: -0.2802 REMARK 3 S31: 0.0954 S32: 0.0227 S33: 0.0080 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 75:163) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3994 -8.7820 -4.9127 REMARK 3 T TENSOR REMARK 3 T11: 0.0844 T22: 0.1916 REMARK 3 T33: 0.2006 T12: 0.0183 REMARK 3 T13: 0.0330 T23: 0.0872 REMARK 3 L TENSOR REMARK 3 L11: 0.8415 L22: 3.1660 REMARK 3 L33: 0.9760 L12: -0.9199 REMARK 3 L13: 0.3355 L23: -0.9570 REMARK 3 S TENSOR REMARK 3 S11: -0.0887 S12: 0.1582 S13: -0.2275 REMARK 3 S21: -0.0409 S22: 0.3096 S23: 0.5915 REMARK 3 S31: -0.0383 S32: -0.2743 S33: -0.1956 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 164:220) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0715 -2.3271 -1.2033 REMARK 3 T TENSOR REMARK 3 T11: 0.1032 T22: 0.2362 REMARK 3 T33: 0.4654 T12: 0.0098 REMARK 3 T13: -0.1016 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.9105 L22: 0.9315 REMARK 3 L33: 0.5959 L12: -0.5468 REMARK 3 L13: -0.2204 L23: -0.3816 REMARK 3 S TENSOR REMARK 3 S11: -0.0695 S12: -0.0508 S13: 0.8183 REMARK 3 S21: 0.1427 S22: -0.1053 S23: -0.8629 REMARK 3 S31: -0.2174 S32: 0.3986 S33: 0.1789 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESID 17:42) REMARK 3 ORIGIN FOR THE GROUP (A): -40.6524 -34.0633 14.6793 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.2977 REMARK 3 T33: 0.3117 T12: 0.0438 REMARK 3 T13: -0.0735 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.2008 L22: 2.9376 REMARK 3 L33: 2.2153 L12: -1.1387 REMARK 3 L13: 1.7406 L23: 0.1196 REMARK 3 S TENSOR REMARK 3 S11: 0.2482 S12: 0.1161 S13: 0.4417 REMARK 3 S21: -0.5739 S22: -0.4201 S23: 0.2555 REMARK 3 S31: -0.3077 S32: -0.5537 S33: 0.2010 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN D AND RESID 43:164) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4127 -36.3623 29.3272 REMARK 3 T TENSOR REMARK 3 T11: 0.0635 T22: 0.1760 REMARK 3 T33: 0.1046 T12: -0.0026 REMARK 3 T13: -0.0224 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 1.0975 L22: 1.7319 REMARK 3 L33: 1.3108 L12: 0.1053 REMARK 3 L13: -0.5102 L23: 0.7598 REMARK 3 S TENSOR REMARK 3 S11: -0.0811 S12: -0.0379 S13: 0.0728 REMARK 3 S21: -0.0604 S22: 0.1157 S23: -0.1780 REMARK 3 S31: -0.0333 S32: 0.2315 S33: -0.0666 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN D AND RESID 165:219) REMARK 3 ORIGIN FOR THE GROUP (A): -39.1800 -38.4412 25.9458 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.2290 REMARK 3 T33: 0.2903 T12: -0.0018 REMARK 3 T13: -0.0342 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.8230 L22: 0.3600 REMARK 3 L33: 0.8646 L12: -0.4029 REMARK 3 L13: 0.6342 L23: 0.1944 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: -0.1564 S13: -0.1139 REMARK 3 S21: -0.0471 S22: -0.0549 S23: 0.4424 REMARK 3 S31: -0.0183 S32: -0.3917 S33: 0.0951 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -28.5260 -11.6510 14.5949 REMARK 3 T TENSOR REMARK 3 T11: 0.3819 T22: 0.1362 REMARK 3 T33: 0.1137 T12: 0.1099 REMARK 3 T13: -0.0816 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 0.7236 L22: 4.8545 REMARK 3 L33: 3.1794 L12: -0.0877 REMARK 3 L13: 0.8567 L23: -2.7143 REMARK 3 S TENSOR REMARK 3 S11: -0.0683 S12: 0.1573 S13: 0.0295 REMARK 3 S21: 1.3938 S22: -0.4766 S23: -0.5662 REMARK 3 S31: -1.1212 S32: 0.2786 S33: 0.3173 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -29.3632 -12.2469 14.7463 REMARK 3 T TENSOR REMARK 3 T11: 0.7723 T22: 0.5870 REMARK 3 T33: 0.3744 T12: 0.1658 REMARK 3 T13: -0.2322 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 3.0730 L22: 3.3019 REMARK 3 L33: 0.4207 L12: -0.8627 REMARK 3 L13: 0.7168 L23: -3.2411 REMARK 3 S TENSOR REMARK 3 S11: -0.6560 S12: -1.4775 S13: 0.0301 REMARK 3 S21: 2.0631 S22: 0.2566 S23: -0.2862 REMARK 3 S31: -0.8243 S32: 0.3993 S33: 0.3567 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -30.1511 -32.1947 44.5575 REMARK 3 T TENSOR REMARK 3 T11: 0.3714 T22: 0.1294 REMARK 3 T33: 0.2180 T12: 0.0531 REMARK 3 T13: 0.1631 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 1.4719 L22: 5.6179 REMARK 3 L33: 1.1332 L12: -2.1411 REMARK 3 L13: -1.5637 L23: 2.0561 REMARK 3 S TENSOR REMARK 3 S11: -0.2193 S12: 0.1119 S13: -0.1785 REMARK 3 S21: 1.2822 S22: -0.1467 S23: 0.9915 REMARK 3 S31: 0.2697 S32: -0.1143 S33: 0.2907 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): -28.7828 -29.8666 44.7184 REMARK 3 T TENSOR REMARK 3 T11: 0.3141 T22: 0.3623 REMARK 3 T33: 0.4431 T12: 0.1783 REMARK 3 T13: 0.2185 T23: -0.1173 REMARK 3 L TENSOR REMARK 3 L11: 0.1050 L22: 1.5792 REMARK 3 L33: 1.7698 L12: 0.8552 REMARK 3 L13: -0.3019 L23: -0.7187 REMARK 3 S TENSOR REMARK 3 S11: -0.1492 S12: -0.3622 S13: 0.1524 REMARK 3 S21: 0.5905 S22: 0.1288 S23: 0.8675 REMARK 3 S31: 0.0306 S32: -0.3884 S33: 0.1041 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3S6I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-09; 17-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 110; 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 22-BM; 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792; 0.97872 REMARK 200 MONOCHROMATOR : SI(111); SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32231 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 29.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40400 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES (PH 6.5), 20% (W/V) PEG 8K REMARK 280 AND 2.4% (V/V) GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.14900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 465 LYS A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 ILE A 11 REMARK 465 VAL A 12 REMARK 465 THR A 13 REMARK 465 SER A 14 REMARK 465 LEU A 15 REMARK 465 PRO A 222 REMARK 465 VAL A 223 REMARK 465 ARG A 224 REMARK 465 PRO A 225 REMARK 465 LYS A 226 REMARK 465 LYS A 227 REMARK 465 HIS A 228 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 LEU D 3 REMARK 465 ASP D 4 REMARK 465 ILE D 5 REMARK 465 GLU D 6 REMARK 465 GLU D 7 REMARK 465 LYS D 8 REMARK 465 GLU D 9 REMARK 465 GLU D 10 REMARK 465 ILE D 11 REMARK 465 VAL D 12 REMARK 465 THR D 13 REMARK 465 SER D 14 REMARK 465 LEU D 15 REMARK 465 VAL D 223 REMARK 465 ARG D 224 REMARK 465 PRO D 225 REMARK 465 LYS D 226 REMARK 465 LYS D 227 REMARK 465 HIS D 228 REMARK 465 DA F 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 LYS A 30 NZ REMARK 470 LYS A 34 CD CE NZ REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 LYS A 66 CE NZ REMARK 470 ASN A 80 CG OD1 ND2 REMARK 470 ASN A 81 CG OD1 ND2 REMARK 470 GLN A 83 CG CD OE1 NE2 REMARK 470 ASP A 94 CG OD1 OD2 REMARK 470 PHE A 95 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 ARG A 106 CD NE CZ NH1 NH2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 GLU A 127 OE1 OE2 REMARK 470 GLU A 139 CD OE1 OE2 REMARK 470 LYS A 145 CD CE NZ REMARK 470 ARG A 182 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 189 CD CE NZ REMARK 470 MET A 190 CG SD CE REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 ILE A 198 CG1 CG2 CD1 REMARK 470 LYS A 215 CD CE NZ REMARK 470 THR A 220 OG1 CG2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 DA C 12 O5' C5' REMARK 470 LYS D 17 CG CD CE NZ REMARK 470 GLU D 27 CG CD OE1 OE2 REMARK 470 GLU D 46 CG CD OE1 OE2 REMARK 470 LYS D 47 CG CD CE NZ REMARK 470 ASN D 80 CG OD1 ND2 REMARK 470 ASP D 94 CG OD1 OD2 REMARK 470 GLU D 96 CG CD OE1 OE2 REMARK 470 ARG D 99 CD NE CZ NH1 NH2 REMARK 470 ARG D 106 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 127 CG CD OE1 OE2 REMARK 470 GLU D 128 CG CD OE1 OE2 REMARK 470 ARG D 131 CZ NH1 NH2 REMARK 470 GLU D 135 CG CD OE1 OE2 REMARK 470 LYS D 145 CG CD CE NZ REMARK 470 ASP D 163 CG OD1 OD2 REMARK 470 LYS D 185 CD CE NZ REMARK 470 MET D 190 CE REMARK 470 LYS D 194 CD CE NZ REMARK 470 LYS D 215 CG CD CE NZ REMARK 470 LYS D 221 CG CD CE NZ REMARK 470 PRO D 222 O REMARK 470 DT E 1 O5' C5' REMARK 470 DA F 13 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 2 O4' - C1' - N9 ANGL. DEV. = -5.2 DEGREES REMARK 500 DC B 5 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT B 11 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG C 20 O4' - C1' - N9 ANGL. DEV. = -4.6 DEGREES REMARK 500 DC E 5 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC F 16 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 62 -53.77 77.79 REMARK 500 ILE A 78 50.13 -110.86 REMARK 500 ASN A 80 71.97 15.07 REMARK 500 PRO A 184 -71.57 -65.96 REMARK 500 PRO A 201 33.32 -97.81 REMARK 500 GLN D 62 -55.98 73.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 229 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 142 O REMARK 620 2 ILE A 144 O 93.3 REMARK 620 3 ILE A 147 O 96.9 82.7 REMARK 620 4 DC B 10 OP1 171.6 87.7 91.6 REMARK 620 5 HOH B 15 O 91.3 94.2 171.4 80.2 REMARK 620 6 HOH B 39 O 89.0 170.8 88.2 91.4 94.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 229 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR D 142 O REMARK 620 2 ILE D 144 O 97.1 REMARK 620 3 ILE D 147 O 90.7 84.4 REMARK 620 4 HOH D 251 O 83.7 93.3 173.8 REMARK 620 5 DC E 10 OP1 166.8 93.7 97.8 88.1 REMARK 620 6 HOH E 38 O 82.1 172.4 88.0 94.1 88.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 229 DBREF 3S6I A 1 228 UNP Q92383 MAG1_SCHPO 1 228 DBREF 3S6I D 1 228 UNP Q92383 MAG1_SCHPO 1 228 DBREF 3S6I B 1 11 PDB 3S6I 3S6I 1 11 DBREF 3S6I E 1 11 PDB 3S6I 3S6I 1 11 DBREF 3S6I C 12 22 PDB 3S6I 3S6I 12 22 DBREF 3S6I F 12 22 PDB 3S6I 3S6I 12 22 SEQRES 1 A 228 MET THR LEU ASP ILE GLU GLU LYS GLU GLU ILE VAL THR SEQRES 2 A 228 SER LEU THR LYS ALA GLU ILE HIS LEU SER GLY LEU ASP SEQRES 3 A 228 GLU ASN TRP LYS ARG LEU VAL LYS LEU VAL GLY ASN TYR SEQRES 4 A 228 ARG PRO ASN ARG SER MET GLU LYS LYS GLU PRO TYR GLU SEQRES 5 A 228 GLU LEU ILE ARG ALA VAL ALA SER GLN GLN LEU HIS SER SEQRES 6 A 228 LYS ALA ALA ASN ALA ILE PHE ASN ARG PHE LYS SER ILE SEQRES 7 A 228 SER ASN ASN GLY GLN PHE PRO THR PRO GLU GLU ILE ARG SEQRES 8 A 228 ASP MET ASP PHE GLU ILE MET ARG ALA CYS GLY PHE SER SEQRES 9 A 228 ALA ARG LYS ILE ASP SER LEU LYS SER ILE ALA GLU ALA SEQRES 10 A 228 THR ILE SER GLY LEU ILE PRO THR LYS GLU GLU ALA GLU SEQRES 11 A 228 ARG LEU SER ASN GLU GLU LEU ILE GLU ARG LEU THR GLN SEQRES 12 A 228 ILE LYS GLY ILE GLY ARG TRP THR VAL GLU MET LEU LEU SEQRES 13 A 228 ILE PHE SER LEU ASN ARG ASP ASP VAL MET PRO ALA ASP SEQRES 14 A 228 ASP LEU SER ILE ARG ASN GLY TYR ARG TYR LEU HIS ARG SEQRES 15 A 228 LEU PRO LYS ILE PRO THR LYS MET TYR VAL LEU LYS HIS SEQRES 16 A 228 SER GLU ILE CYS ALA PRO PHE ARG THR ALA ALA ALA TRP SEQRES 17 A 228 TYR LEU TRP LYS THR SER LYS LEU ALA ASP TYR THR LYS SEQRES 18 A 228 PRO VAL ARG PRO LYS LYS HIS SEQRES 1 B 11 DT DG DT DC DC DA 3DR DG DT DC DT SEQRES 1 C 11 DA DA DG DA DC DT DT DG DG DA DC SEQRES 1 D 228 MET THR LEU ASP ILE GLU GLU LYS GLU GLU ILE VAL THR SEQRES 2 D 228 SER LEU THR LYS ALA GLU ILE HIS LEU SER GLY LEU ASP SEQRES 3 D 228 GLU ASN TRP LYS ARG LEU VAL LYS LEU VAL GLY ASN TYR SEQRES 4 D 228 ARG PRO ASN ARG SER MET GLU LYS LYS GLU PRO TYR GLU SEQRES 5 D 228 GLU LEU ILE ARG ALA VAL ALA SER GLN GLN LEU HIS SER SEQRES 6 D 228 LYS ALA ALA ASN ALA ILE PHE ASN ARG PHE LYS SER ILE SEQRES 7 D 228 SER ASN ASN GLY GLN PHE PRO THR PRO GLU GLU ILE ARG SEQRES 8 D 228 ASP MET ASP PHE GLU ILE MET ARG ALA CYS GLY PHE SER SEQRES 9 D 228 ALA ARG LYS ILE ASP SER LEU LYS SER ILE ALA GLU ALA SEQRES 10 D 228 THR ILE SER GLY LEU ILE PRO THR LYS GLU GLU ALA GLU SEQRES 11 D 228 ARG LEU SER ASN GLU GLU LEU ILE GLU ARG LEU THR GLN SEQRES 12 D 228 ILE LYS GLY ILE GLY ARG TRP THR VAL GLU MET LEU LEU SEQRES 13 D 228 ILE PHE SER LEU ASN ARG ASP ASP VAL MET PRO ALA ASP SEQRES 14 D 228 ASP LEU SER ILE ARG ASN GLY TYR ARG TYR LEU HIS ARG SEQRES 15 D 228 LEU PRO LYS ILE PRO THR LYS MET TYR VAL LEU LYS HIS SEQRES 16 D 228 SER GLU ILE CYS ALA PRO PHE ARG THR ALA ALA ALA TRP SEQRES 17 D 228 TYR LEU TRP LYS THR SER LYS LEU ALA ASP TYR THR LYS SEQRES 18 D 228 PRO VAL ARG PRO LYS LYS HIS SEQRES 1 E 11 DT DG DT DC DC DA 3DR DG DT DC DT SEQRES 1 F 11 DA DA DG DA DC DT DT DG DG DA DC HET 3DR B 7 11 HET 3DR E 7 11 HET NA A 229 1 HET NA D 229 1 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM NA SODIUM ION HETSYN 3DR ABASIC DIDEOXYRIBOSE FORMUL 2 3DR 2(C5 H11 O6 P) FORMUL 7 NA 2(NA 1+) FORMUL 9 HOH *112(H2 O) HELIX 1 1 THR A 16 GLY A 24 1 9 HELIX 2 2 ASP A 26 GLY A 37 1 12 HELIX 3 3 GLU A 49 GLN A 61 1 13 HELIX 4 4 HIS A 64 SER A 77 1 14 HELIX 5 5 SER A 79 GLN A 83 5 5 HELIX 6 6 THR A 86 MET A 93 1 8 HELIX 7 7 ASP A 94 GLY A 102 1 9 HELIX 8 8 SER A 104 GLY A 121 1 18 HELIX 9 9 THR A 125 GLU A 130 1 6 HELIX 10 10 SER A 133 THR A 142 1 10 HELIX 11 11 GLY A 148 SER A 159 1 12 HELIX 12 12 ASP A 170 HIS A 181 1 12 HELIX 13 13 THR A 188 GLU A 197 1 10 HELIX 14 14 ILE A 198 ALA A 200 5 3 HELIX 15 15 PHE A 202 THR A 213 1 12 HELIX 16 16 SER A 214 LEU A 216 5 3 HELIX 17 17 THR D 16 GLY D 24 1 9 HELIX 18 18 ASP D 26 GLY D 37 1 12 HELIX 19 19 GLU D 49 GLN D 61 1 13 HELIX 20 20 HIS D 64 LYS D 76 1 13 HELIX 21 21 THR D 86 MET D 93 1 8 HELIX 22 22 ASP D 94 GLY D 102 1 9 HELIX 23 23 SER D 104 GLY D 121 1 18 HELIX 24 24 THR D 125 GLU D 130 1 6 HELIX 25 25 SER D 133 THR D 142 1 10 HELIX 26 26 GLY D 148 SER D 159 1 12 HELIX 27 27 ASP D 170 HIS D 181 1 12 HELIX 28 28 THR D 188 GLU D 197 1 10 HELIX 29 29 ILE D 198 ALA D 200 5 3 HELIX 30 30 PHE D 202 THR D 213 1 12 HELIX 31 31 SER D 214 LEU D 216 5 3 LINK O3' DA B 6 P 3DR B 7 1555 1555 1.60 LINK O3' 3DR B 7 P DG B 8 1555 1555 1.60 LINK O3' DA E 6 P 3DR E 7 1555 1555 1.59 LINK O3' 3DR E 7 P DG E 8 1555 1555 1.60 LINK O THR A 142 NA NA A 229 1555 1555 2.58 LINK O ILE A 144 NA NA A 229 1555 1555 2.71 LINK O ILE A 147 NA NA A 229 1555 1555 2.63 LINK NA NA A 229 OP1 DC B 10 1555 1555 2.60 LINK NA NA A 229 O HOH B 15 1555 1555 2.95 LINK NA NA A 229 O HOH B 39 1555 1555 2.80 LINK O THR D 142 NA NA D 229 1555 1555 2.64 LINK O ILE D 144 NA NA D 229 1555 1555 2.59 LINK O ILE D 147 NA NA D 229 1555 1555 2.71 LINK NA NA D 229 O HOH D 251 1555 1555 2.83 LINK NA NA D 229 OP1 DC E 10 1555 1555 2.45 LINK NA NA D 229 O HOH E 38 1555 1555 2.70 CISPEP 1 ALA A 200 PRO A 201 0 9.18 CISPEP 2 ALA D 200 PRO D 201 0 4.84 SITE 1 AC1 6 THR A 142 ILE A 144 ILE A 147 DC B 10 SITE 2 AC1 6 HOH B 15 HOH B 39 SITE 1 AC2 6 THR D 142 ILE D 144 ILE D 147 HOH D 251 SITE 2 AC2 6 DC E 10 HOH E 38 CRYST1 54.317 112.298 61.113 90.00 99.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018410 0.000000 0.003098 0.00000 SCALE2 0.000000 0.008905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016593 0.00000