HEADER TRANSFERASE 25-MAY-11 3S6K TITLE CRYSTAL STRUCTURE OF XCNAGS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLGLUTAMATE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.1, 2.7.2.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 314565; SOURCE 4 STRAIN: 8004; SOURCE 5 GENE: XC_1873; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS SYNTHASE, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.SHI,Y.LI,J.CABRERA-LUQUE,Z.JIN,X.YU,N.M.ALLEWELL,M.TUCHMAN REVDAT 1 18-APR-12 3S6K 0 JRNL AUTH D.SHI,Y.LI,J.CABRERA-LUQUE,Z.JIN,X.YU,G.ZHAO,N.HASKINS, JRNL AUTH 2 N.M.ALLEWELL,M.TUCHMAN JRNL TITL A NOVEL N-ACETYLGLUTAMATE SYNTHASE ARCHITECTURE REVEALED BY JRNL TITL 2 THE CRYSTAL STRUCTURE OF THE BIFUNCTIONAL ENZYME FROM JRNL TITL 3 MARICAULIS MARIS. JRNL REF PLOS ONE V. 6 28825 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 22174908 JRNL DOI 10.1371/JOURNAL.PONE.0028825 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.5 REMARK 3 NUMBER OF REFLECTIONS : 33401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.324 REMARK 3 R VALUE (WORKING SET) : 0.321 REMARK 3 FREE R VALUE : 0.388 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0778 - 6.0322 1.00 4428 238 0.3031 0.3498 REMARK 3 2 6.0322 - 4.7895 0.99 4424 233 0.3378 0.4125 REMARK 3 3 4.7895 - 4.1845 0.98 4331 237 0.2896 0.3664 REMARK 3 4 4.1845 - 3.8022 0.97 4298 223 0.3168 0.4438 REMARK 3 5 3.8022 - 3.5297 0.90 3992 216 0.3492 0.3962 REMARK 3 6 3.5297 - 3.3217 0.73 3264 173 0.3582 0.3921 REMARK 3 7 3.3217 - 3.1554 0.53 2340 124 0.3630 0.4940 REMARK 3 8 3.1554 - 3.0181 0.41 1837 96 0.3792 0.4611 REMARK 3 9 3.0181 - 2.9019 0.32 1437 80 0.3990 0.4462 REMARK 3 10 2.9019 - 2.8018 0.31 1360 70 0.4116 0.4695 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 161.53 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 52.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 190.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 32.30900 REMARK 3 B22 (A**2) : 32.30900 REMARK 3 B33 (A**2) : -64.61800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3466 REMARK 3 ANGLE : 1.647 4699 REMARK 3 CHIRALITY : 0.121 543 REMARK 3 PLANARITY : 0.006 607 REMARK 3 DIHEDRAL : 20.029 1276 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 10:38) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3917 63.2621 90.3620 REMARK 3 T TENSOR REMARK 3 T11: -1.4397 T22: 0.3893 REMARK 3 T33: 1.9377 T12: 1.7513 REMARK 3 T13: -1.3719 T23: -0.1812 REMARK 3 L TENSOR REMARK 3 L11: 7.7205 L22: 5.2422 REMARK 3 L33: 1.5319 L12: 4.9181 REMARK 3 L13: -0.0832 L23: -0.8112 REMARK 3 S TENSOR REMARK 3 S11: 1.9089 S12: -3.8348 S13: -0.3901 REMARK 3 S21: 3.3131 S22: -3.0021 S23: 1.1535 REMARK 3 S31: 1.0495 S32: 0.8728 S33: 1.1796 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 39:207) REMARK 3 ORIGIN FOR THE GROUP (A): 56.4536 40.6692 74.5591 REMARK 3 T TENSOR REMARK 3 T11: 0.3927 T22: 1.2843 REMARK 3 T33: 1.1408 T12: -0.1919 REMARK 3 T13: -0.2860 T23: -0.1529 REMARK 3 L TENSOR REMARK 3 L11: -1.1626 L22: -1.9947 REMARK 3 L33: 5.3766 L12: 4.3641 REMARK 3 L13: -3.4993 L23: 0.1105 REMARK 3 S TENSOR REMARK 3 S11: 0.7170 S12: -0.9538 S13: 0.5859 REMARK 3 S21: -0.2466 S22: -0.5270 S23: -0.0736 REMARK 3 S31: -0.2502 S32: -0.2786 S33: -0.0412 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain A and resid 208:294) REMARK 3 ORIGIN FOR THE GROUP (A): 53.0144 45.4974 95.4749 REMARK 3 T TENSOR REMARK 3 T11: 0.4537 T22: 1.1386 REMARK 3 T33: 1.0276 T12: 0.1555 REMARK 3 T13: -0.1911 T23: -0.3000 REMARK 3 L TENSOR REMARK 3 L11: 10.5352 L22: 8.4003 REMARK 3 L33: 8.4806 L12: 5.0499 REMARK 3 L13: -3.6625 L23: 0.1683 REMARK 3 S TENSOR REMARK 3 S11: 1.0468 S12: -0.3587 S13: 1.6226 REMARK 3 S21: 0.4542 S22: -0.1749 S23: 2.5359 REMARK 3 S31: 0.2093 S32: -0.7947 S33: -0.7181 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain A and resid 295:388) REMARK 3 ORIGIN FOR THE GROUP (A): 55.0458 66.1085 113.1535 REMARK 3 T TENSOR REMARK 3 T11: 1.3720 T22: 1.2701 REMARK 3 T33: 1.1237 T12: 0.0975 REMARK 3 T13: -0.1729 T23: -0.3175 REMARK 3 L TENSOR REMARK 3 L11: 8.6371 L22: 1.6456 REMARK 3 L33: 4.1858 L12: -2.1749 REMARK 3 L13: -1.3545 L23: 2.0764 REMARK 3 S TENSOR REMARK 3 S11: 0.5415 S12: -0.6747 S13: -0.2493 REMARK 3 S21: 0.2213 S22: -0.3632 S23: -0.3068 REMARK 3 S31: -0.3215 S32: 1.2487 S33: -0.1619 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (chain A and resid 389:447) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8212 61.9348 120.4085 REMARK 3 T TENSOR REMARK 3 T11: 0.9883 T22: 2.1410 REMARK 3 T33: 1.0520 T12: 0.6558 REMARK 3 T13: 0.1272 T23: -0.1682 REMARK 3 L TENSOR REMARK 3 L11: 5.9730 L22: 5.4994 REMARK 3 L33: 6.7456 L12: 3.2330 REMARK 3 L13: 0.9597 L23: 0.5818 REMARK 3 S TENSOR REMARK 3 S11: -1.2178 S12: -2.8541 S13: 0.0509 REMARK 3 S21: 0.1450 S22: 1.3715 S23: -1.8295 REMARK 3 S31: -2.8354 S32: -1.9927 S33: -0.2166 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3S6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-11. REMARK 100 THE RCSB ID CODE IS RCSB065824. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9734 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.072 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.3 REMARK 200 DATA REDUNDANCY : 17.200 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 55.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: ISIR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM MALONATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.57600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.78800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 127.57600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.78800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 127.57600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 63.78800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 127.57600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 63.78800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 77140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 66.61400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 115.37883 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 127.57600 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 66.61400 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 115.37883 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 127.57600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 PRO A 7 REMARK 465 HIS A 8 REMARK 465 LYS A 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 204 CG GLU A 204 CD 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 147 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 PRO A 243 C - N - CA ANGL. DEV. = 19.3 DEGREES REMARK 500 PRO A 243 C - N - CD ANGL. DEV. = -20.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 19 -78.15 -72.50 REMARK 500 SER A 20 -48.42 -24.01 REMARK 500 MSE A 22 -167.25 -123.24 REMARK 500 ALA A 23 -73.52 -75.47 REMARK 500 GLN A 37 115.35 55.73 REMARK 500 LEU A 38 89.60 162.51 REMARK 500 ASP A 39 169.59 46.28 REMARK 500 ARG A 42 39.97 -77.91 REMARK 500 PHE A 43 -122.95 -99.10 REMARK 500 ALA A 44 -177.51 -69.80 REMARK 500 VAL A 45 54.41 -158.16 REMARK 500 VAL A 46 58.32 -58.82 REMARK 500 LYS A 47 109.48 -45.02 REMARK 500 VAL A 48 -150.74 -97.51 REMARK 500 ASP A 55 -71.44 -90.13 REMARK 500 SER A 65 -74.50 -41.05 REMARK 500 ILE A 75 62.75 -109.40 REMARK 500 VAL A 76 154.75 -33.29 REMARK 500 LEU A 77 64.60 -151.15 REMARK 500 HIS A 78 -174.94 -59.30 REMARK 500 ALA A 80 108.74 -23.76 REMARK 500 ILE A 93 28.37 85.96 REMARK 500 GLU A 94 67.71 -103.23 REMARK 500 GLN A 96 125.93 109.05 REMARK 500 THR A 97 46.07 -145.00 REMARK 500 VAL A 98 -72.19 -16.84 REMARK 500 LEU A 101 -135.32 -112.89 REMARK 500 ARG A 102 -147.39 -124.73 REMARK 500 HIS A 107 22.84 -64.84 REMARK 500 ALA A 108 -54.87 -128.50 REMARK 500 ALA A 110 -45.57 -25.82 REMARK 500 ALA A 132 -118.25 -78.00 REMARK 500 ARG A 133 47.69 162.17 REMARK 500 THR A 135 69.41 -152.45 REMARK 500 SER A 136 125.09 -3.10 REMARK 500 ILE A 137 10.56 -144.02 REMARK 500 THR A 138 -31.40 27.10 REMARK 500 GLU A 143 30.38 -62.83 REMARK 500 ALA A 144 53.01 -35.61 REMARK 500 GLU A 145 150.31 -27.63 REMARK 500 TYR A 152 -27.64 -161.52 REMARK 500 LEU A 154 56.18 -105.84 REMARK 500 VAL A 158 69.70 -50.56 REMARK 500 PRO A 176 59.80 -45.58 REMARK 500 VAL A 177 88.45 -61.03 REMARK 500 GLU A 183 89.32 139.96 REMARK 500 THR A 184 -156.48 -37.59 REMARK 500 SER A 186 28.42 -72.44 REMARK 500 GLN A 206 50.80 74.28 REMARK 500 PRO A 207 -174.79 -55.66 REMARK 500 REMARK 500 THIS ENTRY HAS 107 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 137 THR A 138 137.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 138 24.4 L L OUTSIDE RANGE REMARK 500 ALA A 144 24.8 L L OUTSIDE RANGE REMARK 500 VAL A 158 24.0 L L OUTSIDE RANGE REMARK 500 VAL A 177 21.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S6G RELATED DB: PDB REMARK 900 HOMOLOG PROTEIN FROM MARICAULIS MARIS REMARK 900 RELATED ID: 3G6H RELATED DB: PDB REMARK 900 HOMOLOG PROTEIN FROM MARICAULIS MARIS REMARK 900 RELATED ID: 3S7Y RELATED DB: PDB REMARK 900 HOMOLOG PROTEIN FROM MARICAULIS MARIS DBREF 3S6K A 1 447 UNP Q4UVI7 Q4UVI7_XANC8 1 447 SEQADV 3S6K MSE A -19 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K GLY A -18 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K SER A -17 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K SER A -16 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K HIS A -15 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K HIS A -14 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K HIS A -13 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K HIS A -12 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K HIS A -11 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K HIS A -10 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K SER A -9 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K SER A -8 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K GLY A -7 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K LEU A -6 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K VAL A -5 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K PRO A -4 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K ARG A -3 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K GLY A -2 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K SER A -1 UNP Q4UVI7 EXPRESSION TAG SEQADV 3S6K HIS A 0 UNP Q4UVI7 EXPRESSION TAG SEQRES 1 A 467 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 467 LEU VAL PRO ARG GLY SER HIS MSE SER LEU PRO ALA GLN SEQRES 3 A 467 PRO HIS LYS GLN THR ARG GLN THR ILE VAL ARG LEU LEU SEQRES 4 A 467 SER SER MSE ALA SER ALA LYS GLU ILE SER GLN TYR LEU SEQRES 5 A 467 LYS ARG PHE SER GLN LEU ASP ALA LYS ARG PHE ALA VAL SEQRES 6 A 467 VAL LYS VAL GLY GLY ALA VAL LEU ARG ASP ASP LEU GLU SEQRES 7 A 467 ALA LEU THR SER SER LEU SER PHE LEU GLN GLU VAL GLY SEQRES 8 A 467 LEU THR PRO ILE VAL LEU HIS GLY ALA GLY PRO GLN LEU SEQRES 9 A 467 ASP ALA GLU LEU SER ALA ALA GLY ILE GLU LYS GLN THR SEQRES 10 A 467 VAL ASN GLY LEU ARG VAL THR SER PRO HIS ALA LEU ALA SEQRES 11 A 467 ILE VAL ARG LYS VAL PHE GLN ALA SER ASN LEU LYS LEU SEQRES 12 A 467 VAL GLU ALA LEU GLN GLN ASN GLY ALA ARG ALA THR SER SEQRES 13 A 467 ILE THR GLY GLY VAL PHE GLU ALA GLU TYR LEU ASN ARG SEQRES 14 A 467 ASP THR TYR GLY LEU VAL GLY GLU VAL LYS ALA VAL ASN SEQRES 15 A 467 LEU ALA PRO ILE GLU ALA SER LEU GLN ALA GLY SER ILE SEQRES 16 A 467 PRO VAL ILE THR SER LEU GLY GLU THR PRO SER GLY GLN SEQRES 17 A 467 ILE LEU ASN VAL ASN ALA ASP PHE ALA ALA ASN GLU LEU SEQRES 18 A 467 VAL GLN GLU LEU GLN PRO TYR LYS ILE ILE PHE LEU THR SEQRES 19 A 467 GLY THR GLY GLY LEU LEU ASP ALA GLU GLY LYS LEU ILE SEQRES 20 A 467 ASP SER ILE ASN LEU SER THR GLU TYR ASP HIS LEU MSE SEQRES 21 A 467 GLN GLN PRO TRP ILE ASN GLY GLY MSE ARG VAL LYS ILE SEQRES 22 A 467 GLU GLN ILE LYS ASP LEU LEU ASP ARG LEU PRO LEU GLU SEQRES 23 A 467 SER SER VAL SER ILE THR ARG PRO ALA ASP LEU ALA LYS SEQRES 24 A 467 GLU LEU PHE THR HIS LYS GLY SER GLY THR LEU VAL ARG SEQRES 25 A 467 ARG GLY GLU ARG VAL LEU ARG ALA THR SER TRP ASP GLU SEQRES 26 A 467 LEU ASP LEU PRO ARG LEU THR SER LEU ILE GLU SER SER SEQRES 27 A 467 PHE GLY ARG THR LEU VAL PRO ASP TYR PHE SER ASN THR SEQRES 28 A 467 LYS LEU LEU ARG ALA TYR VAL SER GLU ASN TYR ARG ALA SEQRES 29 A 467 ALA VAL ILE LEU THR ASP GLU GLY MSE LEU GLY ALA SER SEQRES 30 A 467 ALA LEU ILE TYR LEU ASP LYS PHE ALA VAL LEU ASP ASP SEQRES 31 A 467 ALA GLN GLY GLU GLY LEU GLY ARG ALA VAL TRP ASN VAL SEQRES 32 A 467 MSE ARG GLU GLU THR PRO GLN LEU PHE TRP ARG SER ARG SEQRES 33 A 467 HIS ASN ASN GLN VAL ASN ILE PHE TYR TYR ALA GLU SER SEQRES 34 A 467 ASP GLY CYS ILE LYS GLN GLU LYS TRP LYS VAL PHE TRP SEQRES 35 A 467 TYR GLY LEU GLU ASN PHE GLU GLN ILE GLN HIS CYS VAL SEQRES 36 A 467 ALA HIS CYS ALA THR ARG GLN PRO THR LEU LEU GLY MODRES 3S6K MSE A 22 MET SELENOMETHIONINE MODRES 3S6K MSE A 240 MET SELENOMETHIONINE MODRES 3S6K MSE A 249 MET SELENOMETHIONINE MODRES 3S6K MSE A 353 MET SELENOMETHIONINE MODRES 3S6K MSE A 384 MET SELENOMETHIONINE HET MSE A 22 8 HET MSE A 240 8 HET MSE A 249 8 HET MSE A 353 8 HET MSE A 384 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) HELIX 1 1 THR A 11 SER A 21 1 11 HELIX 2 2 SER A 24 ARG A 34 1 11 HELIX 3 3 GLY A 49 ARG A 54 1 6 HELIX 4 4 LEU A 57 GLU A 69 1 13 HELIX 5 5 GLY A 81 ALA A 90 1 10 HELIX 6 6 SER A 105 GLY A 131 1 27 HELIX 7 7 LEU A 163 ALA A 168 1 6 HELIX 8 8 ALA A 168 GLY A 173 1 6 HELIX 9 9 ASN A 193 GLN A 206 1 14 HELIX 10 10 TYR A 236 GLN A 241 1 6 HELIX 11 11 GLY A 247 ASP A 261 1 15 HELIX 12 12 ASP A 276 THR A 283 1 8 HELIX 13 13 ASP A 307 PHE A 319 1 13 HELIX 14 14 LEU A 368 GLY A 373 1 6 HELIX 15 15 LEU A 376 ARG A 385 1 10 HELIX 16 16 VAL A 401 SER A 409 1 9 HELIX 17 17 ASN A 427 GLN A 442 1 16 SHEET 1 A 7 VAL A 297 ALA A 300 0 SHEET 2 A 7 ARG A 335 SER A 339 -1 O ALA A 336 N ALA A 300 SHEET 3 A 7 ALA A 345 GLU A 351 -1 O VAL A 346 N TYR A 337 SHEET 4 A 7 LEU A 359 PHE A 365 -1 O LEU A 359 N GLU A 351 SHEET 5 A 7 LEU A 391 SER A 395 1 O PHE A 392 N LEU A 362 SHEET 6 A 7 TRP A 418 TYR A 423 -1 O LYS A 419 N SER A 395 SHEET 7 A 7 GLY A 411 GLN A 415 -1 N ILE A 413 O VAL A 420 LINK C SER A 21 N MSE A 22 1555 1555 1.33 LINK C MSE A 22 N ALA A 23 1555 1555 1.33 LINK C LEU A 239 N MSE A 240 1555 1555 1.33 LINK C MSE A 240 N GLN A 241 1555 1555 1.32 LINK C GLY A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N ARG A 250 1555 1555 1.33 LINK C GLY A 352 N MSE A 353 1555 1555 1.33 LINK C MSE A 353 N LEU A 354 1555 1555 1.33 LINK C VAL A 383 N MSE A 384 1555 1555 1.33 LINK C MSE A 384 N ARG A 385 1555 1555 1.33 CISPEP 1 SER A 357 ALA A 358 0 1.27 CRYST1 133.228 133.228 191.364 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007506 0.004334 0.000000 0.00000 SCALE2 0.000000 0.008667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005226 0.00000