HEADER FLUORESCENT PROTEIN 26-MAY-11 3S7O TITLE CRYSTAL STRUCTURE OF THE INFRARED FLUORESCENT D207H VARIANT OF TITLE 2 DEINOCOCCUS BACTERIOPHYTOCHROME CHROMOPHORE BINDING DOMAIN AT 1.24 TITLE 3 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHYTOCHROME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CHROMOPHORE BINIDNG DOMAIN (UNP RESIDUES 1-321); COMPND 5 SYNONYM: PHYTOCHROME-LIKE PROTEIN; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: BPHP, DR_A0050; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS BILIVERDIN, PAS, GAF, PHYTOCHROME, BACTERIOPHYTOCHROME, KEYWDS 2 PHOTORECEPTOR, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.T.FOREST,M.E.AULDRIDGE,K.A.SATYSHUR,D.M.ANSTROM REVDAT 4 13-SEP-23 3S7O 1 COMPND REMARK SEQADV HETNAM REVDAT 3 17-SEP-14 3S7O 1 HETATM REVDAT 2 28-NOV-12 3S7O 1 JRNL REVDAT 1 21-DEC-11 3S7O 0 JRNL AUTH M.E.AULDRIDGE,K.A.SATYSHUR,D.M.ANSTROM,K.T.FOREST JRNL TITL STRUCTURE-GUIDED ENGINEERING ENHANCES A PHYTOCHROME-BASED JRNL TITL 2 INFRARED FLUORESCENT PROTEIN. JRNL REF J.BIOL.CHEM. V. 287 7000 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22210774 JRNL DOI 10.1074/JBC.M111.295121 REMARK 2 REMARK 2 RESOLUTION. 1.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 83531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4403 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 237 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2395 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.335 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2670 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1785 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3675 ; 1.506 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4371 ; 2.291 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 6.147 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;34.916 ;22.952 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 408 ;11.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.630 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 416 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3015 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 524 ; 0.015 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1676 ; 1.531 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 659 ; 2.081 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2725 ; 2.665 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 994 ; 3.127 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 949 ; 5.047 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4455 ; 1.450 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3S7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000065864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84232 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.240 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2O9C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOTHER LIQUOR: 20% V/V PEG 4000, 20% REMARK 280 V/V ISOPROPANOL, 0.1 M SODIUM CITRATE, PH 5.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.42400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.65100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.42400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.65100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 131 REMARK 465 TRP A 132 REMARK 465 ASP A 133 REMARK 465 SER A 134 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE3 MET A 144 O HOH A 515 1.13 REMARK 500 HE ARG A 213 O HOH A 543 1.54 REMARK 500 O HOH A 349 O HOH A 350 1.81 REMARK 500 O HOH A 337 O HOH A 342 2.00 REMARK 500 CE MET A 144 O HOH A 515 2.02 REMARK 500 O LEU A 56 O HOH A 643 2.07 REMARK 500 O LEU A 6 O HOH A 368 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 346 O HOH A 695 4556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LBV A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O9C RELATED DB: PDB REMARK 900 DRCBD Y307S REMARK 900 RELATED ID: 1ZTU RELATED DB: PDB REMARK 900 SAME AS 2O9C BUT WITH A PRO TO THR SUBSTITUTION AT POSITION 240 AND REMARK 900 TYROSINE AT POSITION 307 REMARK 900 RELATED ID: 2O9B RELATED DB: PDB REMARK 900 SAME AS 2O9C AT LOWER RESOLUTION REMARK 900 RELATED ID: 3S7N RELATED DB: PDB REMARK 900 RELATED ID: 3S7P RELATED DB: PDB REMARK 900 RELATED ID: 3S7Q RELATED DB: PDB DBREF 3S7O A 1 321 UNP Q9RZA4 BPHY_DEIRA 1 321 SEQADV 3S7O MET A -13 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O ALA A -12 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O SER A -11 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O MET A -10 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O THR A -9 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O GLY A -8 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O GLY A -7 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O GLN A -6 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O GLN A -5 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O MET A -4 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O GLY A -3 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O ARG A -2 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O GLY A -1 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O SER A 0 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O HIS A 207 UNP Q9RZA4 ASP 207 ENGINEERED MUTATION SEQADV 3S7O SER A 307 UNP Q9RZA4 TYR 307 ENGINEERED MUTATION SEQADV 3S7O LEU A 322 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O GLU A 323 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O HIS A 324 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O HIS A 325 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O HIS A 326 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O HIS A 327 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O HIS A 328 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7O HIS A 329 UNP Q9RZA4 EXPRESSION TAG SEQRES 1 A 343 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 343 SER MET SER ARG ASP PRO LEU PRO PHE PHE PRO PRO LEU SEQRES 3 A 343 TYR LEU GLY GLY PRO GLU ILE THR THR GLU ASN CYS GLU SEQRES 4 A 343 ARG GLU PRO ILE HIS ILE PRO GLY SER ILE GLN PRO HIS SEQRES 5 A 343 GLY ALA LEU LEU THR ALA ASP GLY HIS SER GLY GLU VAL SEQRES 6 A 343 LEU GLN MET SER LEU ASN ALA ALA THR PHE LEU GLY GLN SEQRES 7 A 343 GLU PRO THR VAL LEU ARG GLY GLN THR LEU ALA ALA LEU SEQRES 8 A 343 LEU PRO GLU GLN TRP PRO ALA LEU GLN ALA ALA LEU PRO SEQRES 9 A 343 PRO GLY CYS PRO ASP ALA LEU GLN TYR ARG ALA THR LEU SEQRES 10 A 343 ASP TRP PRO ALA ALA GLY HIS LEU SER LEU THR VAL HIS SEQRES 11 A 343 ARG VAL GLY GLU LEU LEU ILE LEU GLU PHE GLU PRO THR SEQRES 12 A 343 GLU ALA TRP ASP SER THR GLY PRO HIS ALA LEU ARG ASN SEQRES 13 A 343 ALA MET PHE ALA LEU GLU SER ALA PRO ASN LEU ARG ALA SEQRES 14 A 343 LEU ALA GLU VAL ALA THR GLN THR VAL ARG GLU LEU THR SEQRES 15 A 343 GLY PHE ASP ARG VAL MET LEU TYR LYS PHE ALA PRO ASP SEQRES 16 A 343 ALA THR GLY GLU VAL ILE ALA GLU ALA ARG ARG GLU GLY SEQRES 17 A 343 LEU HIS ALA PHE LEU GLY HIS ARG PHE PRO ALA SER HIS SEQRES 18 A 343 ILE PRO ALA GLN ALA ARG ALA LEU TYR THR ARG HIS LEU SEQRES 19 A 343 LEU ARG LEU THR ALA ASP THR ARG ALA ALA ALA VAL PRO SEQRES 20 A 343 LEU ASP PRO VAL LEU ASN PRO GLN THR ASN ALA PRO THR SEQRES 21 A 343 PRO LEU GLY GLY ALA VAL LEU ARG ALA THR SER PRO MET SEQRES 22 A 343 HIS MET GLN TYR LEU ARG ASN MET GLY VAL GLY SER SER SEQRES 23 A 343 LEU SER VAL SER VAL VAL VAL GLY GLY GLN LEU TRP GLY SEQRES 24 A 343 LEU ILE ALA CYS HIS HIS GLN THR PRO TYR VAL LEU PRO SEQRES 25 A 343 PRO ASP LEU ARG THR THR LEU GLU SER LEU GLY ARG LEU SEQRES 26 A 343 LEU SER LEU GLN VAL GLN VAL LYS GLU ALA LEU GLU HIS SEQRES 27 A 343 HIS HIS HIS HIS HIS HET LBV A 330 78 HET GOL A1001 14 HETNAM LBV 3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3- HETNAM 2 LBV METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4- HETNAM 3 LBV METHYL-PYRROL-1-IUM -2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3- HETNAM 4 LBV ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2- HETNAM 5 LBV YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3- YL]PROPANOIC HETNAM 6 LBV ACID HETNAM GOL GLYCEROL HETSYN LBV 2(R),3(E)- PHYTOCHROMOBILIN HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 LBV C33 H37 N4 O6 1+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *365(H2 O) HELIX 1 1 PRO A 11 GLY A 15 5 5 HELIX 2 2 ASN A 23 GLU A 27 5 5 HELIX 3 3 ASN A 57 GLY A 63 1 7 HELIX 4 4 GLU A 65 ARG A 70 1 6 HELIX 5 5 THR A 73 LEU A 78 1 6 HELIX 6 6 GLN A 81 LEU A 89 1 9 HELIX 7 7 GLY A 136 ALA A 150 1 15 HELIX 8 8 ASN A 152 GLY A 169 1 18 HELIX 9 9 PRO A 204 ILE A 208 5 5 HELIX 10 10 PRO A 209 HIS A 219 1 11 HELIX 11 11 SER A 257 MET A 267 1 11 HELIX 12 12 PRO A 298 LEU A 322 1 25 SHEET 1 A 7 SER A 34 ILE A 35 0 SHEET 2 A 7 VAL A 232 ASP A 235 -1 O VAL A 232 N ILE A 35 SHEET 3 A 7 VAL A 51 SER A 55 -1 N MET A 54 O ASP A 235 SHEET 4 A 7 ALA A 40 ASP A 45 -1 N THR A 43 O LEU A 52 SHEET 5 A 7 LEU A 121 THR A 129 -1 O LEU A 124 N LEU A 42 SHEET 6 A 7 HIS A 110 VAL A 118 -1 N THR A 114 O GLU A 125 SHEET 7 A 7 TYR A 99 LEU A 103 -1 N LEU A 103 O LEU A 111 SHEET 1 B 6 ARG A 202 PHE A 203 0 SHEET 2 B 6 GLY A 184 ARG A 191 -1 N GLY A 184 O PHE A 203 SHEET 3 B 6 ARG A 172 PHE A 178 -1 N LYS A 177 O GLU A 185 SHEET 4 B 6 GLN A 282 HIS A 291 -1 O ALA A 288 N MET A 174 SHEET 5 B 6 SER A 271 VAL A 279 -1 N LEU A 273 O CYS A 289 SHEET 6 B 6 LEU A 221 THR A 224 -1 N THR A 224 O SER A 272 CISPEP 1 ASP A 235 PRO A 236 0 -14.73 SITE 1 AC1 23 THR A 21 CYS A 24 MET A 174 PHE A 198 SITE 2 AC1 23 PHE A 203 HIS A 207 ILE A 208 PRO A 209 SITE 3 AC1 23 TYR A 216 ARG A 254 THR A 256 SER A 257 SITE 4 AC1 23 MET A 259 HIS A 260 TYR A 263 SER A 272 SITE 5 AC1 23 SER A 274 HIS A 290 HOH A 376 HOH A 382 SITE 6 AC1 23 HOH A 383 HOH A 390 HOH A 392 SITE 1 AC2 7 ARG A 172 HIS A 196 MET A 267 GLY A 268 SITE 2 AC2 7 HIS A 290 GLN A 292 GLU A 323 CRYST1 86.848 51.302 80.363 90.00 115.38 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011514 0.000000 0.005463 0.00000 SCALE2 0.000000 0.019492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013773 0.00000