HEADER FLUORESCENT PROTEIN 26-MAY-11 3S7P TITLE CRYSTAL STRUCTURE OF THE INFRARED FLUORESCENT D207H VARIANT OF TITLE 2 DEINOCOCCUS BACTERIOPHYTOCHROME CHROMOPHORE BINDING DOMAIN AT 1.72 TITLE 3 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHYTOCHROME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CHROMOPHORE BINIDNG DOMAIN (UNP RESIDUES 1-321); COMPND 5 SYNONYM: PHYTOCHROME-LIKE PROTEIN; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: BPHP, DR_A0050; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS BILIVERDIN, PAS, GAF, PHYTOCHROME, BACTERIOPHYTOCHROME, KEYWDS 2 PHOTORECEPTOR, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.T.FOREST,M.E.AULDRIDGE,K.A.SATYSHUR REVDAT 3 13-SEP-23 3S7P 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK REVDAT 2 28-NOV-12 3S7P 1 JRNL REVDAT 1 21-DEC-11 3S7P 0 JRNL AUTH M.E.AULDRIDGE,K.A.SATYSHUR,D.M.ANSTROM,K.T.FOREST JRNL TITL STRUCTURE-GUIDED ENGINEERING ENHANCES A PHYTOCHROME-BASED JRNL TITL 2 INFRARED FLUORESCENT PROTEIN. JRNL REF J.BIOL.CHEM. V. 287 7000 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22210774 JRNL DOI 10.1074/JBC.M111.295121 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 31863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1701 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2167 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2395 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.267 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2548 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1696 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3496 ; 1.479 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4119 ; 0.959 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ; 6.383 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;33.795 ;22.941 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;11.693 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.031 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2839 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 487 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1600 ; 0.742 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 633 ; 0.154 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2586 ; 1.343 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 948 ; 2.013 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 909 ; 3.243 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1370 -31.1860 32.3500 REMARK 3 T TENSOR REMARK 3 T11: 0.2218 T22: 0.1795 REMARK 3 T33: 0.1431 T12: -0.1232 REMARK 3 T13: -0.0745 T23: 0.1072 REMARK 3 L TENSOR REMARK 3 L11: 1.8748 L22: 0.1780 REMARK 3 L33: 5.7365 L12: -0.2525 REMARK 3 L13: -0.9129 L23: 0.6060 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: -0.2749 S13: -0.2779 REMARK 3 S21: 0.2152 S22: -0.1495 S23: -0.1086 REMARK 3 S31: 0.3695 S32: -0.0095 S33: 0.1426 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 60 REMARK 3 RESIDUE RANGE : A 330 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): 8.164 -18.097 25.772 REMARK 3 T TENSOR REMARK 3 T11: 0.1088 T22: 0.1677 REMARK 3 T33: 0.0883 T12: -0.0388 REMARK 3 T13: 0.0142 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 1.3462 L22: 0.4692 REMARK 3 L33: 1.0612 L12: -0.1614 REMARK 3 L13: 0.0632 L23: 0.3063 REMARK 3 S TENSOR REMARK 3 S11: 0.0900 S12: -0.2688 S13: 0.1386 REMARK 3 S21: 0.0396 S22: -0.1282 S23: -0.0154 REMARK 3 S31: 0.0365 S32: -0.1446 S33: 0.0381 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8160 -5.0110 25.2080 REMARK 3 T TENSOR REMARK 3 T11: 0.2119 T22: 0.2605 REMARK 3 T33: 0.2005 T12: 0.0809 REMARK 3 T13: -0.0072 T23: -0.1717 REMARK 3 L TENSOR REMARK 3 L11: 9.2181 L22: 5.4525 REMARK 3 L33: 2.0308 L12: -4.9924 REMARK 3 L13: -3.7686 L23: 3.8149 REMARK 3 S TENSOR REMARK 3 S11: 0.7908 S12: -0.3645 S13: 0.9942 REMARK 3 S21: -0.7201 S22: -0.5447 S23: -0.1306 REMARK 3 S31: -0.5716 S32: -0.3619 S33: -0.2461 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7890 -15.6220 16.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.4009 T22: 0.1909 REMARK 3 T33: 0.0898 T12: 0.1230 REMARK 3 T13: 0.0117 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 2.1493 L22: 3.6001 REMARK 3 L33: 5.7111 L12: 1.2183 REMARK 3 L13: -1.0115 L23: 1.2341 REMARK 3 S TENSOR REMARK 3 S11: 0.1146 S12: 0.1801 S13: 0.1479 REMARK 3 S21: -0.9844 S22: -0.5113 S23: 0.1913 REMARK 3 S31: 0.1827 S32: -0.7763 S33: 0.3968 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3170 -13.8630 11.5960 REMARK 3 T TENSOR REMARK 3 T11: 0.1219 T22: 0.0973 REMARK 3 T33: 0.2170 T12: 0.0370 REMARK 3 T13: 0.0053 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.8888 L22: 0.4278 REMARK 3 L33: 2.1572 L12: 0.4117 REMARK 3 L13: 0.6145 L23: 0.9716 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: -0.0042 S13: 0.3397 REMARK 3 S21: -0.0987 S22: -0.0850 S23: 0.1218 REMARK 3 S31: -0.1748 S32: -0.1502 S33: 0.0936 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6000 -29.2730 -4.4520 REMARK 3 T TENSOR REMARK 3 T11: 0.1018 T22: 0.1051 REMARK 3 T33: 0.1162 T12: 0.0143 REMARK 3 T13: -0.0157 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.8942 L22: 1.6918 REMARK 3 L33: 1.1739 L12: 0.4196 REMARK 3 L13: -0.1186 L23: 0.7377 REMARK 3 S TENSOR REMARK 3 S11: -0.0258 S12: 0.1208 S13: 0.0089 REMARK 3 S21: -0.0943 S22: -0.0140 S23: 0.1479 REMARK 3 S31: -0.0904 S32: -0.0059 S33: 0.0398 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 234 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0390 -29.1490 11.1990 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.0927 REMARK 3 T33: 0.1054 T12: 0.0069 REMARK 3 T13: -0.0080 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.4073 L22: 0.8553 REMARK 3 L33: 0.9648 L12: 0.3111 REMARK 3 L13: 0.2320 L23: 0.6169 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.0354 S13: -0.0444 REMARK 3 S21: 0.0733 S22: 0.0069 S23: -0.0650 REMARK 3 S31: 0.0616 S32: 0.0808 S33: -0.0594 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 235 A 267 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7220 -21.3740 24.7190 REMARK 3 T TENSOR REMARK 3 T11: 0.1252 T22: 0.1155 REMARK 3 T33: 0.0845 T12: -0.0284 REMARK 3 T13: -0.0028 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.9208 L22: 0.5329 REMARK 3 L33: 2.1210 L12: -0.4962 REMARK 3 L13: -1.6012 L23: 0.4460 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.1555 S13: -0.0564 REMARK 3 S21: 0.1322 S22: -0.0469 S23: -0.0317 REMARK 3 S31: 0.1071 S32: 0.0011 S33: 0.0518 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 268 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1580 -26.4730 8.9760 REMARK 3 T TENSOR REMARK 3 T11: 0.1046 T22: 0.0941 REMARK 3 T33: 0.1050 T12: 0.0004 REMARK 3 T13: 0.0042 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.6233 L22: 2.0465 REMARK 3 L33: 0.5421 L12: 0.6724 REMARK 3 L13: 0.1139 L23: -0.2376 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: 0.0125 S13: 0.0020 REMARK 3 S21: 0.0321 S22: 0.0266 S23: 0.0564 REMARK 3 S31: 0.0289 S32: 0.0134 S33: -0.0431 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 297 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5770 -29.4340 2.8760 REMARK 3 T TENSOR REMARK 3 T11: 0.0868 T22: 0.1233 REMARK 3 T33: 0.1364 T12: -0.0041 REMARK 3 T13: 0.0015 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.2535 L22: 13.6850 REMARK 3 L33: 1.5961 L12: 2.6858 REMARK 3 L13: 1.8862 L23: 3.6003 REMARK 3 S TENSOR REMARK 3 S11: -0.1255 S12: 0.1700 S13: -0.1838 REMARK 3 S21: 0.0469 S22: 0.2363 S23: 0.2219 REMARK 3 S31: -0.0756 S32: 0.1490 S33: -0.1108 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3S7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000065865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33621 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.21500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2O9C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% V/V PEG 4000, 20% V/V ISOPROPANOL, REMARK 280 0.1M SODIUM CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.53600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.83300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.53600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.83300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 131 REMARK 465 TRP A 132 REMARK 465 ASP A 133 REMARK 465 SER A 134 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 243 O HOH A 553 1.59 REMARK 500 O ARG A 218 O HOH A 460 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 23.25 -141.27 REMARK 500 TYR A 295 118.38 -161.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 6 PRO A 7 -147.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LBV A 330 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O9C RELATED DB: PDB REMARK 900 DRCBD Y307S REMARK 900 RELATED ID: 1ZTU RELATED DB: PDB REMARK 900 SAME AS 2O9C BUT WITH A PRO TO THR SUBSTITUTION AT POSITION 240 AND REMARK 900 TYROSINE AT POSITION 307 REMARK 900 RELATED ID: 2O9B RELATED DB: PDB REMARK 900 SAME AS 2O9C AT LOWER RESOLUTION REMARK 900 RELATED ID: 3S7N RELATED DB: PDB REMARK 900 RELATED ID: 3S7O RELATED DB: PDB REMARK 900 RELATED ID: 3S7Q RELATED DB: PDB DBREF 3S7P A 1 321 UNP Q9RZA4 BPHY_DEIRA 1 321 SEQADV 3S7P MET A -13 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P ALA A -12 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P SER A -11 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P MET A -10 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P THR A -9 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P GLY A -8 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P GLY A -7 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P GLN A -6 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P GLN A -5 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P MET A -4 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P GLY A -3 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P ARG A -2 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P GLY A -1 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P SER A 0 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P HIS A 207 UNP Q9RZA4 ASP 207 ENGINEERED MUTATION SEQADV 3S7P SER A 307 UNP Q9RZA4 TYR 307 ENGINEERED MUTATION SEQADV 3S7P LEU A 322 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P GLU A 323 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P HIS A 324 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P HIS A 325 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P HIS A 326 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P HIS A 327 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P HIS A 328 UNP Q9RZA4 EXPRESSION TAG SEQADV 3S7P HIS A 329 UNP Q9RZA4 EXPRESSION TAG SEQRES 1 A 343 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 343 SER MET SER ARG ASP PRO LEU PRO PHE PHE PRO PRO LEU SEQRES 3 A 343 TYR LEU GLY GLY PRO GLU ILE THR THR GLU ASN CYS GLU SEQRES 4 A 343 ARG GLU PRO ILE HIS ILE PRO GLY SER ILE GLN PRO HIS SEQRES 5 A 343 GLY ALA LEU LEU THR ALA ASP GLY HIS SER GLY GLU VAL SEQRES 6 A 343 LEU GLN MET SER LEU ASN ALA ALA THR PHE LEU GLY GLN SEQRES 7 A 343 GLU PRO THR VAL LEU ARG GLY GLN THR LEU ALA ALA LEU SEQRES 8 A 343 LEU PRO GLU GLN TRP PRO ALA LEU GLN ALA ALA LEU PRO SEQRES 9 A 343 PRO GLY CYS PRO ASP ALA LEU GLN TYR ARG ALA THR LEU SEQRES 10 A 343 ASP TRP PRO ALA ALA GLY HIS LEU SER LEU THR VAL HIS SEQRES 11 A 343 ARG VAL GLY GLU LEU LEU ILE LEU GLU PHE GLU PRO THR SEQRES 12 A 343 GLU ALA TRP ASP SER THR GLY PRO HIS ALA LEU ARG ASN SEQRES 13 A 343 ALA MET PHE ALA LEU GLU SER ALA PRO ASN LEU ARG ALA SEQRES 14 A 343 LEU ALA GLU VAL ALA THR GLN THR VAL ARG GLU LEU THR SEQRES 15 A 343 GLY PHE ASP ARG VAL MET LEU TYR LYS PHE ALA PRO ASP SEQRES 16 A 343 ALA THR GLY GLU VAL ILE ALA GLU ALA ARG ARG GLU GLY SEQRES 17 A 343 LEU HIS ALA PHE LEU GLY HIS ARG PHE PRO ALA SER HIS SEQRES 18 A 343 ILE PRO ALA GLN ALA ARG ALA LEU TYR THR ARG HIS LEU SEQRES 19 A 343 LEU ARG LEU THR ALA ASP THR ARG ALA ALA ALA VAL PRO SEQRES 20 A 343 LEU ASP PRO VAL LEU ASN PRO GLN THR ASN ALA PRO THR SEQRES 21 A 343 PRO LEU GLY GLY ALA VAL LEU ARG ALA THR SER PRO MET SEQRES 22 A 343 HIS MET GLN TYR LEU ARG ASN MET GLY VAL GLY SER SER SEQRES 23 A 343 LEU SER VAL SER VAL VAL VAL GLY GLY GLN LEU TRP GLY SEQRES 24 A 343 LEU ILE ALA CYS HIS HIS GLN THR PRO TYR VAL LEU PRO SEQRES 25 A 343 PRO ASP LEU ARG THR THR LEU GLU SER LEU GLY ARG LEU SEQRES 26 A 343 LEU SER LEU GLN VAL GLN VAL LYS GLU ALA LEU GLU HIS SEQRES 27 A 343 HIS HIS HIS HIS HIS HET LBV A 330 77 HETNAM LBV 3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3- HETNAM 2 LBV METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4- HETNAM 3 LBV METHYL-PYRROL-1-IUM -2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3- HETNAM 4 LBV ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2- HETNAM 5 LBV YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3- YL]PROPANOIC HETNAM 6 LBV ACID HETSYN LBV 2(R),3(E)- PHYTOCHROMOBILIN FORMUL 2 LBV C33 H37 N4 O6 1+ FORMUL 3 HOH *298(H2 O) HELIX 1 1 PRO A 11 GLY A 15 5 5 HELIX 2 2 ASN A 23 GLU A 27 5 5 HELIX 3 3 ASN A 57 GLY A 63 1 7 HELIX 4 4 GLU A 65 ARG A 70 1 6 HELIX 5 5 THR A 73 LEU A 78 1 6 HELIX 6 6 GLN A 81 LEU A 89 1 9 HELIX 7 7 GLY A 136 ALA A 150 1 15 HELIX 8 8 ASN A 152 GLY A 169 1 18 HELIX 9 9 PRO A 204 ILE A 208 5 5 HELIX 10 10 PRO A 209 HIS A 219 1 11 HELIX 11 11 SER A 257 MET A 267 1 11 HELIX 12 12 PRO A 298 LEU A 322 1 25 SHEET 1 A 7 SER A 34 ILE A 35 0 SHEET 2 A 7 VAL A 232 ASP A 235 -1 O VAL A 232 N ILE A 35 SHEET 3 A 7 VAL A 51 SER A 55 -1 N MET A 54 O ASP A 235 SHEET 4 A 7 ALA A 40 ASP A 45 -1 N THR A 43 O LEU A 52 SHEET 5 A 7 LEU A 121 THR A 129 -1 O PHE A 126 N ALA A 40 SHEET 6 A 7 HIS A 110 VAL A 118 -1 N SER A 112 O GLU A 127 SHEET 7 A 7 TYR A 99 LEU A 103 -1 N LEU A 103 O LEU A 111 SHEET 1 B 6 ARG A 202 PHE A 203 0 SHEET 2 B 6 GLY A 184 ARG A 191 -1 N GLY A 184 O PHE A 203 SHEET 3 B 6 ARG A 172 PHE A 178 -1 N LYS A 177 O GLU A 185 SHEET 4 B 6 GLN A 282 HIS A 291 -1 O LEU A 286 N TYR A 176 SHEET 5 B 6 SER A 271 VAL A 279 -1 N LEU A 273 O CYS A 289 SHEET 6 B 6 LEU A 221 THR A 224 -1 N THR A 224 O SER A 272 LINK SG CYS A 24 CBA LBV A 330 1555 1555 1.84 CISPEP 1 ASP A 235 PRO A 236 0 -10.33 SITE 1 AC1 23 CYS A 24 MET A 174 TYR A 176 PHE A 203 SITE 2 AC1 23 HIS A 207 ILE A 208 PRO A 209 TYR A 216 SITE 3 AC1 23 ARG A 254 THR A 256 SER A 257 MET A 259 SITE 4 AC1 23 HIS A 260 TYR A 263 SER A 272 SER A 274 SITE 5 AC1 23 HIS A 290 HOH A 332 HOH A 338 HOH A 339 SITE 6 AC1 23 HOH A 347 HOH A 349 HOH A 609 CRYST1 87.072 51.666 80.228 90.00 115.33 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011485 0.000000 0.005436 0.00000 SCALE2 0.000000 0.019355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013790 0.00000