HEADER HYDROLASE INHIBITOR 29-MAY-11 3S8J TITLE CRYSTAL STRUCTURE OF A PAPAYA LATEX SERINE PROTEASE INHIBITOR (PPI) AT TITLE 2 2.6A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LATEX SERINE PROTEINASE INHIBITOR; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARICA PAPAYA; SOURCE 3 ORGANISM_COMMON: MAMON; SOURCE 4 ORGANISM_TAXID: 3649; SOURCE 5 OTHER_DETAILS: PPI WAS EXTRACTED FROM C. PAPAYA LATEX KEYWDS KUNITZ-STI FOLD, SERINE PROTEASE INHIBITOR, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR A.GARCIA-PINO REVDAT 5 06-NOV-24 3S8J 1 HETSYN REVDAT 4 29-JUL-20 3S8J 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 08-NOV-17 3S8J 1 REMARK REVDAT 2 19-JUN-13 3S8J 1 JRNL REVDAT 1 02-NOV-11 3S8J 0 JRNL AUTH M.AZARKAN,S.MARTINEZ-RODRIGUEZ,L.BUTS,D.BAEYENS-VOLANT, JRNL AUTH 2 A.GARCIA-PINO JRNL TITL THE PLASTICITY OF THE BETA-TREFOIL FOLD CONSTITUTES AN JRNL TITL 2 EVOLUTIONARY PLATFORM FOR PROTEASE INHIBITION JRNL REF J.BIOL.CHEM. V. 286 43726 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 22027836 JRNL DOI 10.1074/JBC.M111.291310 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.2379 - 5.1596 0.90 1444 165 0.1344 0.1874 REMARK 3 2 5.1596 - 4.2215 0.93 1483 114 0.1153 0.1899 REMARK 3 3 4.2215 - 3.7278 0.92 1455 130 0.1270 0.2020 REMARK 3 4 3.7278 - 3.4057 0.92 1491 128 0.1484 0.1977 REMARK 3 5 3.4057 - 3.1722 0.92 1488 126 0.1607 0.2334 REMARK 3 6 3.1722 - 2.9919 0.92 1460 128 0.1748 0.2185 REMARK 3 7 2.9919 - 2.8466 0.92 1485 130 0.1895 0.2488 REMARK 3 8 2.8466 - 2.7260 0.92 1459 128 0.2180 0.3318 REMARK 3 9 2.7260 - 2.6236 0.88 1433 202 0.2419 0.3364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 60.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.75940 REMARK 3 B22 (A**2) : -2.75940 REMARK 3 B33 (A**2) : 5.51880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2901 REMARK 3 ANGLE : 1.236 3957 REMARK 3 CHIRALITY : 0.081 438 REMARK 3 PLANARITY : 0.006 510 REMARK 3 DIHEDRAL : 13.386 994 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:39) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7992 -16.9252 -1.2804 REMARK 3 T TENSOR REMARK 3 T11: 0.3958 T22: 0.1652 REMARK 3 T33: 0.4095 T12: 0.0235 REMARK 3 T13: 0.0143 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.7866 L22: 1.1946 REMARK 3 L33: 2.3390 L12: -0.1208 REMARK 3 L13: 0.4740 L23: -0.1520 REMARK 3 S TENSOR REMARK 3 S11: 0.2911 S12: 0.1498 S13: -0.2756 REMARK 3 S21: 0.0011 S22: -0.0748 S23: -0.0728 REMARK 3 S31: 0.3542 S32: 0.0740 S33: -0.1117 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 40:47) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9944 -10.3274 17.8529 REMARK 3 T TENSOR REMARK 3 T11: 0.6644 T22: 0.5770 REMARK 3 T33: 0.3742 T12: -0.0071 REMARK 3 T13: 0.0224 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 3.1108 L22: 1.2171 REMARK 3 L33: 7.2274 L12: -1.6531 REMARK 3 L13: -1.4378 L23: -0.2872 REMARK 3 S TENSOR REMARK 3 S11: -0.1640 S12: -1.3754 S13: 0.1964 REMARK 3 S21: 1.5504 S22: 0.2669 S23: 0.1329 REMARK 3 S31: 0.3773 S32: -0.6837 S33: -0.2980 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 48:147) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1881 -7.6334 -0.3601 REMARK 3 T TENSOR REMARK 3 T11: 0.2614 T22: 0.2279 REMARK 3 T33: 0.3259 T12: 0.0576 REMARK 3 T13: 0.0097 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.6430 L22: 1.9759 REMARK 3 L33: 2.4854 L12: -1.2514 REMARK 3 L13: -0.0206 L23: 0.1889 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: 0.1690 S13: -0.0448 REMARK 3 S21: 0.0096 S22: -0.1507 S23: 0.0677 REMARK 3 S31: -0.0971 S32: -0.3742 S33: 0.1459 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 148:183) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6350 -6.3137 7.0869 REMARK 3 T TENSOR REMARK 3 T11: 0.4157 T22: 0.2433 REMARK 3 T33: 0.4647 T12: 0.0048 REMARK 3 T13: -0.0107 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.0404 L22: 1.9732 REMARK 3 L33: 1.8840 L12: -0.4148 REMARK 3 L13: -0.2248 L23: -1.0311 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: -0.0857 S13: -0.0508 REMARK 3 S21: 0.0704 S22: -0.1441 S23: -0.3498 REMARK 3 S31: -0.1416 S32: -0.0359 S33: 0.0911 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 3:41) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3982 -24.0267 31.0023 REMARK 3 T TENSOR REMARK 3 T11: 0.4320 T22: 0.2260 REMARK 3 T33: 0.4361 T12: -0.0644 REMARK 3 T13: -0.0251 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.2991 L22: 1.7889 REMARK 3 L33: 2.2473 L12: -0.5353 REMARK 3 L13: -0.3908 L23: -0.1033 REMARK 3 S TENSOR REMARK 3 S11: 0.2046 S12: -0.1307 S13: 0.5243 REMARK 3 S21: 0.2439 S22: -0.2715 S23: 0.0588 REMARK 3 S31: -0.3269 S32: 0.1200 S33: -0.0173 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 42:54) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4541 -23.8237 18.2492 REMARK 3 T TENSOR REMARK 3 T11: 0.6127 T22: 0.3302 REMARK 3 T33: 0.3928 T12: 0.0407 REMARK 3 T13: -0.0983 T23: 0.0666 REMARK 3 L TENSOR REMARK 3 L11: 1.7485 L22: 3.8115 REMARK 3 L33: 1.7033 L12: 0.2762 REMARK 3 L13: -0.0489 L23: -0.3618 REMARK 3 S TENSOR REMARK 3 S11: -0.2320 S12: 0.0057 S13: 0.1815 REMARK 3 S21: -0.8943 S22: -0.0665 S23: 0.0365 REMARK 3 S31: -0.0369 S32: -0.4353 S33: 0.2646 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 55:98) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8599 -28.7082 34.4176 REMARK 3 T TENSOR REMARK 3 T11: 0.3784 T22: 0.3021 REMARK 3 T33: 0.3894 T12: -0.0526 REMARK 3 T13: -0.0076 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 2.9797 L22: 3.4468 REMARK 3 L33: 3.9740 L12: -0.0239 REMARK 3 L13: -0.0292 L23: 0.2417 REMARK 3 S TENSOR REMARK 3 S11: 0.1410 S12: -0.3809 S13: 0.2339 REMARK 3 S21: 0.0088 S22: -0.2957 S23: 0.2003 REMARK 3 S31: -0.2285 S32: -0.4028 S33: 0.1881 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 99:183) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1586 -35.4506 25.9604 REMARK 3 T TENSOR REMARK 3 T11: 0.3511 T22: 0.2781 REMARK 3 T33: 0.3670 T12: -0.1183 REMARK 3 T13: -0.0093 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.6843 L22: 3.1610 REMARK 3 L33: 1.6599 L12: 0.1888 REMARK 3 L13: -0.7344 L23: -1.2856 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.0587 S13: -0.1052 REMARK 3 S21: -0.3107 S22: -0.0678 S23: 0.0257 REMARK 3 S31: 0.0595 S32: -0.1243 S33: 0.0335 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3S8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9150 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15065 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.88 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M SODIUM FORMATE, 0.1 M SODIUM REMARK 280 ACETATE, 0.1 M AMMONIUM SULPHATE, PH 4.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.32333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.64667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ARG A 184 REMARK 465 VAL B 1 REMARK 465 ALA B 2 REMARK 465 ARG B 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 ILE A 26 CD1 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 43 CB CG CD CE NZ REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 LYS A 66 CD CE NZ REMARK 470 ASN A 67 CG OD1 ND2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 ASN A 90 CB CG OD1 ND2 REMARK 470 LYS A 114 CE NZ REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LYS A 138 CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 ARG A 164 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 172 CG OD1 ND2 REMARK 470 ASN A 183 CG OD1 ND2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 ILE B 9 CD1 REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 ALA B 29 CB REMARK 470 ASN B 41 CG OD1 ND2 REMARK 470 LYS B 42 NZ REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 LYS B 66 CD CE NZ REMARK 470 ASN B 67 CG OD1 ND2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 ASN B 88 CG OD1 ND2 REMARK 470 ASN B 90 CB CG OD1 ND2 REMARK 470 LYS B 96 CG CD CE NZ REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 LYS B 129 CD CE NZ REMARK 470 LYS B 130 CD CE NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 ASN B 172 CG OD1 ND2 REMARK 470 LYS B 181 CG CD CE NZ REMARK 470 ASN B 183 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O7 NAG A 185 O HOH A 220 1.25 REMARK 500 OE1 GLU B 75 O HOH B 191 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 54 -65.08 -135.51 REMARK 500 CYS A 142 68.50 -152.37 REMARK 500 ASP A 173 -179.13 -69.44 REMARK 500 ASN B 41 -131.85 47.53 REMARK 500 PHE B 54 -71.53 -112.92 REMARK 500 LYS B 69 -70.06 -50.39 REMARK 500 ASN B 71 -3.17 76.95 REMARK 500 ASP B 98 -178.11 -66.63 REMARK 500 LYS B 114 -73.11 -82.01 REMARK 500 PHE B 135 -2.21 67.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S8K RELATED DB: PDB DBREF 3S8J A 1 184 UNP P80691 LSPI_CARPA 1 184 DBREF 3S8J B 1 184 UNP P80691 LSPI_CARPA 1 184 SEQADV 3S8J ARG A 74 UNP P80691 PHE 74 CONFLICT SEQADV 3S8J ARG B 74 UNP P80691 PHE 74 CONFLICT SEQRES 1 A 184 VAL ALA PRO LYS PRO ILE VAL ASP ILE ASP GLY LYS PRO SEQRES 2 A 184 VAL LEU TYR GLY VAL ASP TYR PHE VAL VAL SER ALA ILE SEQRES 3 A 184 TRP GLY ALA GLY GLY GLY GLY LEU THR VAL TYR GLY PRO SEQRES 4 A 184 GLY ASN LYS LYS LYS CYS PRO LEU SER VAL VAL GLN ASP SEQRES 5 A 184 PRO PHE ASP ASN GLY GLU PRO ILE ILE PHE SER ALA ILE SEQRES 6 A 184 LYS ASN VAL LYS ASP ASN ILE VAL ARG GLU SER VAL ASP SEQRES 7 A 184 LEU ASN VAL LYS PHE ASN ILE THR ILE ASN CYS ASN GLU SEQRES 8 A 184 THR THR ALA TRP LYS VAL ASP ARG PHE PRO GLY VAL ILE SEQRES 9 A 184 GLY TRP THR VAL THR LEU GLY GLY GLU LYS GLY TYR HIS SEQRES 10 A 184 GLY PHE GLU SER THR HIS SER MET PHE LYS ILE LYS LYS SEQRES 11 A 184 ALA GLY LEU PRO PHE SER TYR LYS PHE HIS PHE CYS PRO SEQRES 12 A 184 SER TYR PRO ARG THR ARG LEU ILE PRO CYS ASN ASN VAL SEQRES 13 A 184 ASP ILE PHE PHE ASP LYS TYR ARG ILE ARG ARG LEU ILE SEQRES 14 A 184 LEU THR ASN ASP ALA LYS GLU PHE VAL PHE ILE LYS THR SEQRES 15 A 184 ASN ARG SEQRES 1 B 184 VAL ALA PRO LYS PRO ILE VAL ASP ILE ASP GLY LYS PRO SEQRES 2 B 184 VAL LEU TYR GLY VAL ASP TYR PHE VAL VAL SER ALA ILE SEQRES 3 B 184 TRP GLY ALA GLY GLY GLY GLY LEU THR VAL TYR GLY PRO SEQRES 4 B 184 GLY ASN LYS LYS LYS CYS PRO LEU SER VAL VAL GLN ASP SEQRES 5 B 184 PRO PHE ASP ASN GLY GLU PRO ILE ILE PHE SER ALA ILE SEQRES 6 B 184 LYS ASN VAL LYS ASP ASN ILE VAL ARG GLU SER VAL ASP SEQRES 7 B 184 LEU ASN VAL LYS PHE ASN ILE THR ILE ASN CYS ASN GLU SEQRES 8 B 184 THR THR ALA TRP LYS VAL ASP ARG PHE PRO GLY VAL ILE SEQRES 9 B 184 GLY TRP THR VAL THR LEU GLY GLY GLU LYS GLY TYR HIS SEQRES 10 B 184 GLY PHE GLU SER THR HIS SER MET PHE LYS ILE LYS LYS SEQRES 11 B 184 ALA GLY LEU PRO PHE SER TYR LYS PHE HIS PHE CYS PRO SEQRES 12 B 184 SER TYR PRO ARG THR ARG LEU ILE PRO CYS ASN ASN VAL SEQRES 13 B 184 ASP ILE PHE PHE ASP LYS TYR ARG ILE ARG ARG LEU ILE SEQRES 14 B 184 LEU THR ASN ASP ALA LYS GLU PHE VAL PHE ILE LYS THR SEQRES 15 B 184 ASN ARG MODRES 3S8J ASN A 84 ASN GLYCOSYLATION SITE MODRES 3S8J ASN B 84 ASN GLYCOSYLATION SITE HET NAG A 185 14 HET ACT A 186 4 HET GOL A 187 6 HET FMT A 188 3 HET NAG B 185 14 HET ACT B 186 4 HET ACT B 187 4 HET ACT B 188 4 HET ACT B 189 4 HET FMT B 190 3 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 ACT 5(C2 H3 O2 1-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 FMT 2(C H2 O2) FORMUL 13 HOH *91(H2 O) HELIX 1 1 PHE A 119 MET A 125 5 7 HELIX 2 2 TRP B 27 GLY B 31 5 5 HELIX 3 3 PHE B 119 MET B 125 5 7 SHEET 1 A 2 TYR A 20 SER A 24 0 SHEET 2 A 2 PHE A 177 LYS A 181 -1 O VAL A 178 N VAL A 23 SHEET 1 B 2 LEU A 34 TYR A 37 0 SHEET 2 B 2 SER A 48 GLN A 51 -1 O VAL A 50 N THR A 35 SHEET 1 C 2 ILE A 60 ALA A 64 0 SHEET 2 C 2 LEU A 79 PHE A 83 -1 O LYS A 82 N ILE A 61 SHEET 1 D 2 LYS A 96 PHE A 100 0 SHEET 2 D 2 VAL A 103 THR A 109 -1 O THR A 109 N LYS A 96 SHEET 1 E 4 LYS A 127 LYS A 130 0 SHEET 2 E 4 TYR A 137 PHE A 141 -1 O HIS A 140 N LYS A 127 SHEET 3 E 4 ASN A 154 PHE A 160 -1 O ASN A 154 N PHE A 141 SHEET 4 E 4 ARG A 166 THR A 171 -1 O THR A 171 N ASN A 155 SHEET 1 F 4 ASN B 80 PHE B 83 0 SHEET 2 F 4 ILE B 60 SER B 63 -1 N ILE B 61 O LYS B 82 SHEET 3 F 4 ASP B 19 SER B 24 -1 N TYR B 20 O ILE B 60 SHEET 4 F 4 PHE B 177 LYS B 181 -1 O VAL B 178 N VAL B 23 SHEET 1 G 2 LEU B 34 TYR B 37 0 SHEET 2 G 2 SER B 48 GLN B 51 -1 O SER B 48 N TYR B 37 SHEET 1 H 4 LYS B 127 LYS B 130 0 SHEET 2 H 4 TYR B 137 PHE B 141 -1 O HIS B 140 N LYS B 127 SHEET 3 H 4 ASN B 154 PHE B 160 -1 O VAL B 156 N PHE B 139 SHEET 4 H 4 ARG B 166 THR B 171 -1 O ARG B 167 N PHE B 159 SSBOND 1 CYS A 45 CYS A 89 1555 1555 2.04 SSBOND 2 CYS A 142 CYS A 153 1555 1555 2.05 SSBOND 3 CYS B 45 CYS B 89 1555 1555 2.04 SSBOND 4 CYS B 142 CYS B 153 1555 1555 2.04 LINK ND2 ASN A 84 C1 NAG A 185 1555 1555 1.45 LINK ND2 ASN B 84 C1 NAG B 185 1555 1555 1.47 CISPEP 1 CYS A 45 PRO A 46 0 1.32 CISPEP 2 CYS B 45 PRO B 46 0 -1.51 CRYST1 74.699 74.699 78.970 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013387 0.007729 0.000000 0.00000 SCALE2 0.000000 0.015458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012663 0.00000