HEADER TRANSFERASE/TRANSFERASE INHIBITOR 01-JUN-11 3S9I TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MALATE SYNTHASE IN TITLE 2 COMPLEX WITH 2-4-DIOXO-4-PHENYLBUTANOIC ACID INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE SYNTHASE G; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.3.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: GLCB, MT1885, MTCY1A11.06, RV1837C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS INHIBITOR COMPLEX, STRUCTURAL GENOMICS, MYCOBACTERIUM TUBERCULOSIS KEYWDS 2 STRUCTURAL PROTEOMICS PROJECT, XMTB, MALATE SYNTHASE, TRANSFERASE- KEYWDS 3 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.V.KRIEGER,Q.SUN,J.C.SACCHETTINI,MYCOBACTERIUM TUBERCULOSIS AUTHOR 2 STRUCTURAL PROTEOMICS PROJECT (XMTB) REVDAT 4 13-SEP-23 3S9I 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3S9I 1 REMARK REVDAT 2 20-FEB-13 3S9I 1 JRNL REVDAT 1 07-NOV-12 3S9I 0 JRNL AUTH I.V.KRIEGER,J.S.FREUNDLICH,V.B.GAWANDI,J.P.ROBERTS, JRNL AUTH 2 V.B.GAWANDI,Q.SUN,J.L.OWEN,M.T.FRAILE,S.I.HUSS, JRNL AUTH 3 J.L.LAVANDERA,T.R.IOERGER,J.C.SACCHETTINI JRNL TITL STRUCTURE-GUIDED DISCOVERY OF PHENYL-DIKETO ACIDS AS POTENT JRNL TITL 2 INHIBITORS OF M. TUBERCULOSIS MALATE SYNTHASE. JRNL REF CHEM.BIOL. V. 19 1556 2012 JRNL REFN ISSN 1074-5521 JRNL PMID 23261599 JRNL DOI 10.1016/J.CHEMBIOL.2012.09.018 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 57789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2930 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4173 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2046 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3975 REMARK 3 BIN R VALUE (WORKING SET) : 0.2026 REMARK 3 BIN FREE R VALUE : 0.2449 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.74 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 198 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5464 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 674 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.29870 REMARK 3 B22 (A**2) : -3.29870 REMARK 3 B33 (A**2) : 6.59750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.190 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5674 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7736 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1982 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 153 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 853 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5674 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 763 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7323 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.41 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.59 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3S9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57789 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : 0.51600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: DIRECT REFINEMENT REMARK 200 STARTING MODEL: PDB ENTRY 1N8I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1 M MAGNESIUM REMARK 280 CHLORIDE, 0.1 M TRIS-HCL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.97250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.66550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.66550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 169.45875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.66550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.66550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.48625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.66550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.66550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 169.45875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.66550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.66550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.48625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 112.97250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 LIGAND XI7 WAS BUILD TO MAXIMIZE AGREEMENT WITH THE DENSITY. REMARK 400 DEVIATIONS FROM SP2 GEOMETRY POTENTIALLY ARE DUE TO CHARGE REMARK 400 INFLUENCING INTERACTIONS WITH THE PROTEIN. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 302 REMARK 465 VAL A 303 REMARK 465 ASP A 304 REMARK 465 LYS A 305 REMARK 465 ASP A 306 REMARK 465 GLY A 307 REMARK 465 THR A 308 REMARK 465 ALA A 309 REMARK 465 PHE A 310 REMARK 465 VAL A 381 REMARK 465 ASN A 382 REMARK 465 GLY A 675 REMARK 465 LYS A 728 REMARK 465 PRO A 729 REMARK 465 ALA A 730 REMARK 465 PRO A 731 REMARK 465 SER A 732 REMARK 465 ASP A 733 REMARK 465 ARG A 734 REMARK 465 ALA A 735 REMARK 465 GLY A 736 REMARK 465 ASP A 737 REMARK 465 ASP A 738 REMARK 465 ALA A 739 REMARK 465 ALA A 740 REMARK 465 ARG A 741 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ALA A 674 N ASP A 676 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 74 -150.45 89.81 REMARK 500 GLU A 150 54.15 -90.21 REMARK 500 SER A 264 -87.23 -116.02 REMARK 500 GLU A 273 -115.26 -100.25 REMARK 500 SER A 379 -138.09 -70.88 REMARK 500 ASN A 387 -109.09 -105.63 REMARK 500 GLU A 434 18.20 -140.65 REMARK 500 ASN A 673 -75.48 -87.11 REMARK 500 VAL A 677 -49.93 -154.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 743 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 434 OE2 REMARK 620 2 ASP A 462 OD1 95.4 REMARK 620 3 XI7 A 742 O8 110.2 153.5 REMARK 620 4 XI7 A 742 O11 94.2 93.6 78.4 REMARK 620 5 HOH A1252 O 172.3 81.7 73.7 93.1 REMARK 620 6 HOH A1253 O 87.5 95.6 92.2 170.5 85.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 744 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 964 O REMARK 620 2 HOH A1323 O 94.4 REMARK 620 3 HOH A1324 O 84.3 91.4 REMARK 620 4 HOH A1325 O 169.8 94.2 100.9 REMARK 620 5 HOH A1326 O 86.9 83.6 169.5 88.7 REMARK 620 6 HOH A1327 O 82.2 173.6 93.7 88.7 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 745 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1334 O REMARK 620 2 HOH A1336 O 92.0 REMARK 620 3 HOH A1339 O 76.2 81.3 REMARK 620 4 HOH A1364 O 150.1 85.7 74.0 REMARK 620 5 HOH A1365 O 124.3 85.8 156.3 85.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XI7 A 742 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 743 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 744 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 745 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N8I RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH SUBSTRATE GLYOXYLATE REMARK 900 RELATED ID: 1N8W RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PRODUCTS MALATE AND COA REMARK 900 RELATED ID: 2GQ3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PRODUCTS MALATE AND COA REMARK 900 RELATED ID: RV1837C RELATED DB: TARGETDB REMARK 900 RELATED ID: 3S9Z RELATED DB: PDB REMARK 900 RELATED ID: 3SAD RELATED DB: PDB REMARK 900 RELATED ID: 3SAZ RELATED DB: PDB REMARK 900 RELATED ID: 3SB0 RELATED DB: PDB DBREF 3S9I A 1 741 UNP P0A5J4 MASZ_MYCTU 1 741 SEQADV 3S9I ALA A 619 UNP P0A5J4 CYS 619 ENGINEERED MUTATION SEQRES 1 A 741 MET THR ASP ARG VAL SER VAL GLY ASN LEU ARG ILE ALA SEQRES 2 A 741 ARG VAL LEU TYR ASP PHE VAL ASN ASN GLU ALA LEU PRO SEQRES 3 A 741 GLY THR ASP ILE ASP PRO ASP SER PHE TRP ALA GLY VAL SEQRES 4 A 741 ASP LYS VAL VAL ALA ASP LEU THR PRO GLN ASN GLN ALA SEQRES 5 A 741 LEU LEU ASN ALA ARG ASP GLU LEU GLN ALA GLN ILE ASP SEQRES 6 A 741 LYS TRP HIS ARG ARG ARG VAL ILE GLU PRO ILE ASP MET SEQRES 7 A 741 ASP ALA TYR ARG GLN PHE LEU THR GLU ILE GLY TYR LEU SEQRES 8 A 741 LEU PRO GLU PRO ASP ASP PHE THR ILE THR THR SER GLY SEQRES 9 A 741 VAL ASP ALA GLU ILE THR THR THR ALA GLY PRO GLN LEU SEQRES 10 A 741 VAL VAL PRO VAL LEU ASN ALA ARG PHE ALA LEU ASN ALA SEQRES 11 A 741 ALA ASN ALA ARG TRP GLY SER LEU TYR ASP ALA LEU TYR SEQRES 12 A 741 GLY THR ASP VAL ILE PRO GLU THR ASP GLY ALA GLU LYS SEQRES 13 A 741 GLY PRO THR TYR ASN LYS VAL ARG GLY ASP LYS VAL ILE SEQRES 14 A 741 ALA TYR ALA ARG LYS PHE LEU ASP ASP SER VAL PRO LEU SEQRES 15 A 741 SER SER GLY SER PHE GLY ASP ALA THR GLY PHE THR VAL SEQRES 16 A 741 GLN ASP GLY GLN LEU VAL VAL ALA LEU PRO ASP LYS SER SEQRES 17 A 741 THR GLY LEU ALA ASN PRO GLY GLN PHE ALA GLY TYR THR SEQRES 18 A 741 GLY ALA ALA GLU SER PRO THR SER VAL LEU LEU ILE ASN SEQRES 19 A 741 HIS GLY LEU HIS ILE GLU ILE LEU ILE ASP PRO GLU SER SEQRES 20 A 741 GLN VAL GLY THR THR ASP ARG ALA GLY VAL LYS ASP VAL SEQRES 21 A 741 ILE LEU GLU SER ALA ILE THR THR ILE MET ASP PHE GLU SEQRES 22 A 741 ASP SER VAL ALA ALA VAL ASP ALA ALA ASP LYS VAL LEU SEQRES 23 A 741 GLY TYR ARG ASN TRP LEU GLY LEU ASN LYS GLY ASP LEU SEQRES 24 A 741 ALA ALA ALA VAL ASP LYS ASP GLY THR ALA PHE LEU ARG SEQRES 25 A 741 VAL LEU ASN ARG ASP ARG ASN TYR THR ALA PRO GLY GLY SEQRES 26 A 741 GLY GLN PHE THR LEU PRO GLY ARG SER LEU MET PHE VAL SEQRES 27 A 741 ARG ASN VAL GLY HIS LEU MET THR ASN ASP ALA ILE VAL SEQRES 28 A 741 ASP THR ASP GLY SER GLU VAL PHE GLU GLY ILE MET ASP SEQRES 29 A 741 ALA LEU PHE THR GLY LEU ILE ALA ILE HIS GLY LEU LYS SEQRES 30 A 741 ALA SER ASP VAL ASN GLY PRO LEU ILE ASN SER ARG THR SEQRES 31 A 741 GLY SER ILE TYR ILE VAL LYS PRO LYS MET HIS GLY PRO SEQRES 32 A 741 ALA GLU VAL ALA PHE THR CYS GLU LEU PHE SER ARG VAL SEQRES 33 A 741 GLU ASP VAL LEU GLY LEU PRO GLN ASN THR MET LYS ILE SEQRES 34 A 741 GLY ILE MET ASP GLU GLU ARG ARG THR THR VAL ASN LEU SEQRES 35 A 741 LYS ALA CYS ILE LYS ALA ALA ALA ASP ARG VAL VAL PHE SEQRES 36 A 741 ILE ASN THR GLY PHE LEU ASP ARG THR GLY ASP GLU ILE SEQRES 37 A 741 HIS THR SER MET GLU ALA GLY PRO MET VAL ARG LYS GLY SEQRES 38 A 741 THR MET LYS SER GLN PRO TRP ILE LEU ALA TYR GLU ASP SEQRES 39 A 741 HIS ASN VAL ASP ALA GLY LEU ALA ALA GLY PHE SER GLY SEQRES 40 A 741 ARG ALA GLN VAL GLY LYS GLY MET TRP THR MET THR GLU SEQRES 41 A 741 LEU MET ALA ASP MET VAL GLU THR LYS ILE ALA GLN PRO SEQRES 42 A 741 ARG ALA GLY ALA SER THR ALA TRP VAL PRO SER PRO THR SEQRES 43 A 741 ALA ALA THR LEU HIS ALA LEU HIS TYR HIS GLN VAL ASP SEQRES 44 A 741 VAL ALA ALA VAL GLN GLN GLY LEU ALA GLY LYS ARG ARG SEQRES 45 A 741 ALA THR ILE GLU GLN LEU LEU THR ILE PRO LEU ALA LYS SEQRES 46 A 741 GLU LEU ALA TRP ALA PRO ASP GLU ILE ARG GLU GLU VAL SEQRES 47 A 741 ASP ASN ASN CYS GLN SER ILE LEU GLY TYR VAL VAL ARG SEQRES 48 A 741 TRP VAL ASP GLN GLY VAL GLY ALA SER LYS VAL PRO ASP SEQRES 49 A 741 ILE HIS ASP VAL ALA LEU MET GLU ASP ARG ALA THR LEU SEQRES 50 A 741 ARG ILE SER SER GLN LEU LEU ALA ASN TRP LEU ARG HIS SEQRES 51 A 741 GLY VAL ILE THR SER ALA ASP VAL ARG ALA SER LEU GLU SEQRES 52 A 741 ARG MET ALA PRO LEU VAL ASP ARG GLN ASN ALA GLY ASP SEQRES 53 A 741 VAL ALA TYR ARG PRO MET ALA PRO ASN PHE ASP ASP SER SEQRES 54 A 741 ILE ALA PHE LEU ALA ALA GLN GLU LEU ILE LEU SER GLY SEQRES 55 A 741 ALA GLN GLN PRO ASN GLY TYR THR GLU PRO ILE LEU HIS SEQRES 56 A 741 ARG ARG ARG ARG GLU PHE LYS ALA ARG ALA ALA GLU LYS SEQRES 57 A 741 PRO ALA PRO SER ASP ARG ALA GLY ASP ASP ALA ALA ARG HET XI7 A 742 14 HET MG A 743 1 HET MG A 744 1 HET MG A 745 1 HETNAM XI7 2-4-DIOXO-4-PHENYLBUTANOIC ACID HETNAM MG MAGNESIUM ION FORMUL 2 XI7 C10 H8 O4 FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *674(H2 O) HELIX 1 1 ARG A 14 GLU A 23 1 10 HELIX 2 2 ASP A 31 ARG A 70 1 40 HELIX 3 3 ASP A 77 ILE A 88 1 12 HELIX 4 4 ASP A 106 THR A 111 1 6 HELIX 5 5 ASN A 123 ALA A 133 1 11 HELIX 6 6 LEU A 138 GLY A 144 1 7 HELIX 7 7 ASN A 161 VAL A 180 1 20 HELIX 8 8 SER A 186 ALA A 190 5 5 HELIX 9 9 ASN A 213 GLY A 215 5 3 HELIX 10 10 SER A 247 ASP A 253 1 7 HELIX 11 11 ASP A 280 LYS A 296 1 17 HELIX 12 12 GLU A 360 ILE A 373 1 14 HELIX 13 13 HIS A 374 LYS A 377 5 4 HELIX 14 14 GLY A 402 GLY A 421 1 20 HELIX 15 15 GLU A 435 VAL A 440 1 6 HELIX 16 16 ASN A 441 ALA A 449 1 9 HELIX 17 17 GLY A 459 SER A 471 1 13 HELIX 18 18 MET A 472 GLY A 475 5 4 HELIX 19 19 ARG A 479 SER A 485 5 7 HELIX 20 20 GLN A 486 ALA A 503 1 18 HELIX 21 21 LEU A 521 LYS A 529 1 9 HELIX 22 22 ILE A 530 ALA A 535 1 6 HELIX 23 23 SER A 544 VAL A 558 1 15 HELIX 24 24 ASP A 559 ALA A 568 1 10 HELIX 25 25 THR A 574 LEU A 579 1 6 HELIX 26 26 ALA A 590 GLY A 616 1 27 HELIX 27 27 ASP A 633 HIS A 650 1 18 HELIX 28 28 THR A 654 ALA A 674 1 21 HELIX 29 29 ASN A 685 ASP A 688 5 4 HELIX 30 30 SER A 689 SER A 701 1 13 HELIX 31 31 GLY A 702 TYR A 709 5 8 HELIX 32 32 THR A 710 GLU A 727 1 18 SHEET 1 A 4 ARG A 4 VAL A 7 0 SHEET 2 A 4 LEU A 10 ALA A 13 -1 O LEU A 10 N VAL A 7 SHEET 3 A 4 THR A 346 ASP A 352 -1 O ALA A 349 N ALA A 13 SHEET 4 A 4 GLU A 357 PHE A 359 -1 O VAL A 358 N ILE A 350 SHEET 1 B 9 GLN A 116 PRO A 120 0 SHEET 2 B 9 THR A 267 ASP A 271 1 O ILE A 269 N LEU A 117 SHEET 3 B 9 LEU A 335 ARG A 339 1 O PHE A 337 N THR A 268 SHEET 4 B 9 ILE A 393 LYS A 397 1 O VAL A 396 N VAL A 338 SHEET 5 B 9 MET A 427 ASP A 433 1 O LYS A 428 N ILE A 393 SHEET 6 B 9 VAL A 453 THR A 458 1 O ASN A 457 N ASP A 433 SHEET 7 B 9 GLN A 510 LYS A 513 1 O GLY A 512 N ILE A 456 SHEET 8 B 9 THR A 539 VAL A 542 1 O THR A 539 N LYS A 513 SHEET 9 B 9 GLN A 116 PRO A 120 1 N GLN A 116 O ALA A 540 SHEET 1 C 5 TRP A 135 SER A 137 0 SHEET 2 C 5 VAL A 257 GLU A 263 -1 O LEU A 262 N GLY A 136 SHEET 3 C 5 LEU A 237 ILE A 243 -1 N GLU A 240 O ILE A 261 SHEET 4 C 5 SER A 229 ASN A 234 -1 N LEU A 232 O ILE A 239 SHEET 5 C 5 PHE A 217 THR A 221 -1 N GLY A 219 O LEU A 231 SHEET 1 D 3 GLY A 192 GLN A 196 0 SHEET 2 D 3 GLN A 199 ALA A 203 -1 O VAL A 201 N THR A 194 SHEET 3 D 3 SER A 208 THR A 209 -1 O THR A 209 N VAL A 202 SHEET 1 E 2 ARG A 318 THR A 321 0 SHEET 2 E 2 GLN A 327 LEU A 330 -1 O PHE A 328 N TYR A 320 SHEET 1 F 2 SER A 620 PRO A 623 0 SHEET 2 F 2 ALA A 629 GLU A 632 -1 O LEU A 630 N VAL A 622 LINK OE2 GLU A 434 MG MG A 743 1555 1555 1.94 LINK OD1 ASP A 462 MG MG A 743 1555 1555 2.09 LINK O8 XI7 A 742 MG MG A 743 1555 1555 2.09 LINK O11 XI7 A 742 MG MG A 743 1555 1555 2.17 LINK MG MG A 743 O HOH A1252 1555 1555 2.12 LINK MG MG A 743 O HOH A1253 1555 1555 2.06 LINK MG MG A 744 O HOH A 964 1555 1555 2.08 LINK MG MG A 744 O HOH A1323 1555 1555 1.95 LINK MG MG A 744 O HOH A1324 1555 1555 2.11 LINK MG MG A 744 O HOH A1325 1555 1555 1.97 LINK MG MG A 744 O HOH A1326 1555 1555 2.08 LINK MG MG A 744 O HOH A1327 1555 1555 2.07 LINK MG MG A 745 O HOH A1334 1555 1555 1.96 LINK MG MG A 745 O HOH A1336 1555 1555 2.17 LINK MG MG A 745 O HOH A1339 1555 1555 2.28 LINK MG MG A 745 O HOH A1364 1555 1555 2.11 LINK MG MG A 745 O HOH A1365 1555 1555 1.94 CISPEP 1 ILE A 73 GLU A 74 0 21.39 CISPEP 2 ALA A 683 PRO A 684 0 5.29 SITE 1 AC1 13 ARG A 339 GLU A 434 GLY A 459 PHE A 460 SITE 2 AC1 13 LEU A 461 ASP A 462 TRP A 541 MET A 631 SITE 3 AC1 13 ASP A 633 MG A 743 HOH A 854 HOH A1252 SITE 4 AC1 13 HOH A1253 SITE 1 AC2 5 GLU A 434 ASP A 462 XI7 A 742 HOH A1252 SITE 2 AC2 5 HOH A1253 SITE 1 AC3 6 HOH A 964 HOH A1323 HOH A1324 HOH A1325 SITE 2 AC3 6 HOH A1326 HOH A1327 SITE 1 AC4 6 HIS A 235 HOH A1334 HOH A1336 HOH A1339 SITE 2 AC4 6 HOH A1364 HOH A1365 CRYST1 79.331 79.331 225.945 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012605 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004426 0.00000