HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-JUN-11 3SB1 TITLE HYDROGENASE EXPRESSION PROTEIN HUPH FROM THIOBACILLUS DENITRIFICANS TITLE 2 ATCC 25259 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROGENASE EXPRESSION PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THIOBACILLUS DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 292415; SOURCE 4 STRAIN: ATCC 25259; SOURCE 5 GENE: TBD_1379; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, HUPH, HYDROGENASE EXPRESSION PROTEIN, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,J.RUAN,R.D.LEO, AUTHOR 2 A.JOACHIMIAK,W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG) REVDAT 3 28-FEB-24 3SB1 1 REMARK SEQADV REVDAT 2 08-NOV-17 3SB1 1 REMARK REVDAT 1 06-JUL-11 3SB1 0 JRNL AUTH E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,J.RUAN, JRNL AUTH 2 R.D.LEO,A.JOACHIMIAK,W.F.ANDERSON, JRNL AUTH 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL HYDROGENASE EXPRESSION PROTEIN HUPH FROM THIOBACILLUS JRNL TITL 2 DENITRIFICANS ATCC 25259 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 22523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1214 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1630 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : 1.18000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.930 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1949 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1273 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2672 ; 1.693 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3107 ; 0.923 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 3.555 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;23.110 ;22.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 300 ; 9.310 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;10.717 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2229 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 394 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1256 ; 1.586 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 506 ; 0.538 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2020 ; 2.790 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 693 ; 4.302 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 652 ; 6.912 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 17 A 136 6 REMARK 3 1 B 17 B 136 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1318 ; 0.85 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1318 ; 3.01 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7498 9.4817 12.6278 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.1110 REMARK 3 T33: 0.0848 T12: 0.0016 REMARK 3 T13: 0.0102 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.8023 L22: 2.0253 REMARK 3 L33: 1.7708 L12: 0.0946 REMARK 3 L13: 0.2623 L23: 0.6309 REMARK 3 S TENSOR REMARK 3 S11: 0.0640 S12: -0.2293 S13: 0.1687 REMARK 3 S21: 0.2070 S22: 0.0310 S23: 0.0575 REMARK 3 S31: 0.0125 S32: -0.0463 S33: -0.0950 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2577 9.4024 -8.1302 REMARK 3 T TENSOR REMARK 3 T11: 0.0435 T22: 0.0060 REMARK 3 T33: 0.0219 T12: 0.0007 REMARK 3 T13: 0.0171 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.4052 L22: 0.3450 REMARK 3 L33: 0.7599 L12: -0.1276 REMARK 3 L13: 0.1629 L23: -0.0739 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: -0.0055 S13: 0.0771 REMARK 3 S21: -0.0676 S22: -0.0340 S23: -0.0580 REMARK 3 S31: 0.0044 S32: -0.0043 S33: -0.0047 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 65 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9490 -2.8508 -27.1671 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.0837 REMARK 3 T33: 0.0466 T12: 0.0105 REMARK 3 T13: 0.0290 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 2.6791 L22: 2.1900 REMARK 3 L33: 3.5746 L12: -1.0999 REMARK 3 L13: -0.2991 L23: 0.5650 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: 0.2539 S13: -0.2337 REMARK 3 S21: -0.3021 S22: 0.0490 S23: 0.0235 REMARK 3 S31: 0.2879 S32: 0.2432 S33: -0.0589 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 66 B 136 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2069 -1.0320 -6.1287 REMARK 3 T TENSOR REMARK 3 T11: 0.0169 T22: 0.0094 REMARK 3 T33: 0.0322 T12: 0.0099 REMARK 3 T13: -0.0070 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.7245 L22: 0.2989 REMARK 3 L33: 0.9247 L12: -0.0435 REMARK 3 L13: -0.0753 L23: 0.1886 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.0332 S13: -0.1356 REMARK 3 S21: -0.0041 S22: 0.0109 S23: 0.0087 REMARK 3 S31: 0.0228 S32: 0.0118 S33: -0.0232 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.06885 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23758 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 62.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 13.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 17.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG6000, 5% GLYCEROL, PH 8.3, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.65300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.64550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.65300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.64550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 ILE A 5 REMARK 465 ILE A 6 REMARK 465 PRO A 7 REMARK 465 ILE A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 VAL A 14 REMARK 465 GLU A 15 REMARK 465 THR A 16 REMARK 465 ALA A 75 REMARK 465 MET B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ARG B 3 REMARK 465 GLU B 4 REMARK 465 ILE B 5 REMARK 465 ILE B 6 REMARK 465 PRO B 7 REMARK 465 ILE B 8 REMARK 465 LEU B 9 REMARK 465 PRO B 10 REMARK 465 GLU B 11 REMARK 465 ALA B 12 REMARK 465 PRO B 13 REMARK 465 VAL B 14 REMARK 465 GLU B 15 REMARK 465 THR B 16 REMARK 465 ASP B 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 ALA B 17 CB REMARK 470 LEU B 52 CD1 REMARK 470 THR B 53 OG1 CG2 REMARK 470 PRO B 54 CB CG CD REMARK 470 ALA B 75 CB REMARK 470 ASP B 135 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 126 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 138 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC102169 RELATED DB: TARGETDB DBREF 3SB1 A 1 136 UNP Q3SJ38 Q3SJ38_THIDA 1 136 DBREF 3SB1 B 1 136 UNP Q3SJ38 Q3SJ38_THIDA 1 136 SEQADV 3SB1 MET A -23 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 HIS A -22 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 HIS A -21 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 HIS A -20 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 HIS A -19 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 HIS A -18 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 HIS A -17 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 SER A -16 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 SER A -15 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 GLY A -14 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 VAL A -13 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 ASP A -12 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 LEU A -11 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 GLY A -10 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 THR A -9 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 GLU A -8 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 ASN A -7 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 LEU A -6 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 TYR A -5 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 PHE A -4 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 GLN A -3 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 SER A -2 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 ASN A -1 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 ALA A 0 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 MET B -23 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 HIS B -22 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 HIS B -21 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 HIS B -20 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 HIS B -19 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 HIS B -18 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 HIS B -17 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 SER B -16 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 SER B -15 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 GLY B -14 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 VAL B -13 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 ASP B -12 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 LEU B -11 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 GLY B -10 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 THR B -9 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 GLU B -8 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 ASN B -7 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 LEU B -6 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 TYR B -5 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 PHE B -4 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 GLN B -3 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 SER B -2 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 ASN B -1 UNP Q3SJ38 EXPRESSION TAG SEQADV 3SB1 ALA B 0 UNP Q3SJ38 EXPRESSION TAG SEQRES 1 A 160 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 160 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET THR SEQRES 3 A 160 ARG GLU ILE ILE PRO ILE LEU PRO GLU ALA PRO VAL GLU SEQRES 4 A 160 THR ALA ARG SER GLY ASN ALA LEU PRO LEU LEU ARG GLU SEQRES 5 A 160 ILE ALA GLU HIS LEU HIS HIS LEU LEU GLU THR GLY GLU SEQRES 6 A 160 ALA SER THR ILE ASP LEU SER ALA LEU PRO LEU THR PRO SEQRES 7 A 160 GLY ASP LEU GLU TRP LEU ARG ALA GLU LEU GLY GLY GLY SEQRES 8 A 160 GLU VAL SER VAL THR LEU HIS ALA ASP GLY ALA SER THR SEQRES 9 A 160 LEU ASP GLU THR ALA PHE PRO GLY VAL TRP TRP ILE ILE SEQRES 10 A 160 HIS ARG ASN ALA GLN GLY ALA VAL THR THR GLN PHE ILE SEQRES 11 A 160 GLU VAL ALA PHE VAL PRO GLU LEU VAL LYS SER PRO ARG SEQRES 12 A 160 ALA ASP VAL ALA ALA ALA ARG ALA ALA LEU VAL LEU ARG SEQRES 13 A 160 MET ALA ASP LEU SEQRES 1 B 160 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 160 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET THR SEQRES 3 B 160 ARG GLU ILE ILE PRO ILE LEU PRO GLU ALA PRO VAL GLU SEQRES 4 B 160 THR ALA ARG SER GLY ASN ALA LEU PRO LEU LEU ARG GLU SEQRES 5 B 160 ILE ALA GLU HIS LEU HIS HIS LEU LEU GLU THR GLY GLU SEQRES 6 B 160 ALA SER THR ILE ASP LEU SER ALA LEU PRO LEU THR PRO SEQRES 7 B 160 GLY ASP LEU GLU TRP LEU ARG ALA GLU LEU GLY GLY GLY SEQRES 8 B 160 GLU VAL SER VAL THR LEU HIS ALA ASP GLY ALA SER THR SEQRES 9 B 160 LEU ASP GLU THR ALA PHE PRO GLY VAL TRP TRP ILE ILE SEQRES 10 B 160 HIS ARG ASN ALA GLN GLY ALA VAL THR THR GLN PHE ILE SEQRES 11 B 160 GLU VAL ALA PHE VAL PRO GLU LEU VAL LYS SER PRO ARG SEQRES 12 B 160 ALA ASP VAL ALA ALA ALA ARG ALA ALA LEU VAL LEU ARG SEQRES 13 B 160 MET ALA ASP LEU HET GOL A 137 6 HET PGE A 138 10 HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 PGE C6 H14 O4 FORMUL 5 HOH *162(H2 O) HELIX 1 1 LEU A 23 GLY A 40 1 18 HELIX 2 2 ASP A 46 LEU A 50 5 5 HELIX 3 3 THR A 53 GLY A 65 1 13 HELIX 4 4 PRO A 112 LYS A 116 5 5 HELIX 5 5 PRO A 118 ALA A 134 1 17 HELIX 6 6 ASN B 21 GLY B 40 1 20 HELIX 7 7 SER B 48 LEU B 50 5 3 HELIX 8 8 THR B 53 GLY B 65 1 13 HELIX 9 9 PRO B 112 LYS B 116 5 5 HELIX 10 10 PRO B 118 ALA B 134 1 17 SHEET 1 A10 SER A 43 ILE A 45 0 SHEET 2 A10 VAL A 101 VAL A 108 -1 O VAL A 108 N SER A 43 SHEET 3 A10 VAL A 89 ARG A 95 -1 N ILE A 92 O PHE A 105 SHEET 4 A10 ALA A 78 GLU A 83 -1 N ASP A 82 O TRP A 91 SHEET 5 A10 VAL A 69 LEU A 73 -1 N VAL A 69 O GLU A 83 SHEET 6 A10 VAL B 69 LEU B 73 -1 O THR B 72 N SER A 70 SHEET 7 A10 ALA B 78 GLU B 83 -1 O GLU B 83 N VAL B 69 SHEET 8 A10 VAL B 89 ARG B 95 -1 O TRP B 91 N ASP B 82 SHEET 9 A10 VAL B 101 VAL B 108 -1 O PHE B 105 N ILE B 92 SHEET 10 A10 SER B 43 ASP B 46 -1 N ILE B 45 O ILE B 106 SITE 1 AC1 7 ARG A 18 GLY A 20 ASN A 21 ALA A 22 SITE 2 AC1 7 LEU A 23 ASP A 56 TRP A 59 SITE 1 AC2 4 ASP A 121 ALA A 128 ALA B 85 HOH B 196 CRYST1 83.306 39.291 65.192 90.00 104.74 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012004 0.000000 0.003157 0.00000 SCALE2 0.000000 0.025451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015861 0.00000