HEADER HYDROLASE 05-JUN-11 3SBL TITLE CRYSTAL STRUCTURE OF NEW DELHI METAL-BETA-LACTAMASE-1 FROM KLEBSIELLA TITLE 2 PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE NDM-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 39-270; COMPND 5 SYNONYM: NDM-1, METALLO-BETA-LACTAMASE NDM-1; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLANDM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BM21 MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, ALPHA-BETA STRUCTURE, HYDROLASE, STRUCTURES OF MTB KEYWDS 3 PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN MTB INHIBITORS, MTBI EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.TESAR,R.JEDRZEJCZAK,J.BABNIGG,T.A.BINKOWSKI,J.MIRE, AUTHOR 2 J.SACCHETTINI,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG),STRUCTURES OF MTB PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN AUTHOR 4 MTB INHIBITORS (MTBI) REVDAT 4 13-SEP-23 3SBL 1 REMARK SEQADV REVDAT 3 28-MAR-12 3SBL 1 JRNL REVDAT 2 21-SEP-11 3SBL 1 JRNL VERSN REVDAT 1 29-JUN-11 3SBL 0 JRNL AUTH Y.KIM,C.TESAR,J.MIRE,R.JEDRZEJCZAK,A.BINKOWSKI,G.BABNIGG, JRNL AUTH 2 J.SACCHETTINI,A.JOACHIMIAK JRNL TITL STRUCTURE OF APO- AND MONOMETALATED FORMS OF NDM-1 A HIGHLY JRNL TITL 2 POTENT CARBAPENEM-HYDROLYZING METALLO-BETA-LACTAMASE JRNL REF PLOS ONE V. 6 24621 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21931780 JRNL DOI 10.1371/JOURNAL.PONE.0024621 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_761) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 12300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9280 - 3.6663 0.98 3157 172 0.1663 0.2086 REMARK 3 2 3.6663 - 2.9104 0.99 3065 153 0.1945 0.3117 REMARK 3 3 2.9104 - 2.5426 0.97 2983 157 0.2546 0.2527 REMARK 3 4 2.5426 - 2.3102 0.81 2499 114 0.3026 0.4231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 34.59 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.680 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.92060 REMARK 3 B22 (A**2) : 2.36170 REMARK 3 B33 (A**2) : 16.55890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1800 REMARK 3 ANGLE : 1.520 2456 REMARK 3 CHIRALITY : 0.104 270 REMARK 3 PLANARITY : 0.009 327 REMARK 3 DIHEDRAL : 16.639 625 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 38:67) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0321 -18.2812 -49.9851 REMARK 3 T TENSOR REMARK 3 T11: 0.1907 T22: 0.3762 REMARK 3 T33: 0.3909 T12: -0.0203 REMARK 3 T13: 0.0096 T23: 0.0819 REMARK 3 L TENSOR REMARK 3 L11: 4.6534 L22: 3.6783 REMARK 3 L33: 4.4615 L12: -0.0275 REMARK 3 L13: -0.0827 L23: -1.7089 REMARK 3 S TENSOR REMARK 3 S11: -0.1572 S12: 0.4323 S13: -0.1042 REMARK 3 S21: -0.2448 S22: 0.2660 S23: -0.0231 REMARK 3 S31: 0.0526 S32: -0.1347 S33: -0.0497 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 68:137) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6370 -15.8996 -40.1375 REMARK 3 T TENSOR REMARK 3 T11: 0.1878 T22: 0.2710 REMARK 3 T33: 0.3180 T12: 0.0160 REMARK 3 T13: -0.0018 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 4.8974 L22: 3.1524 REMARK 3 L33: 3.5721 L12: 1.1958 REMARK 3 L13: -1.1284 L23: -0.0841 REMARK 3 S TENSOR REMARK 3 S11: 0.1815 S12: 0.1926 S13: 0.2211 REMARK 3 S21: 0.0002 S22: 0.1089 S23: 0.2502 REMARK 3 S31: -0.1699 S32: -0.3170 S33: -0.2451 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 138:194) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4270 -16.9236 -25.8326 REMARK 3 T TENSOR REMARK 3 T11: 0.3430 T22: 0.3084 REMARK 3 T33: 0.3381 T12: -0.0315 REMARK 3 T13: 0.0847 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 8.1091 L22: 1.3942 REMARK 3 L33: 4.2565 L12: -1.7112 REMARK 3 L13: 0.6768 L23: -0.8387 REMARK 3 S TENSOR REMARK 3 S11: 0.0900 S12: -0.4958 S13: 0.0953 REMARK 3 S21: -0.0510 S22: 0.1786 S23: -0.0452 REMARK 3 S31: -0.3314 S32: 0.1740 S33: -0.2895 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 195:212) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8923 -20.6758 -37.7643 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.3250 REMARK 3 T33: 0.2376 T12: 0.0849 REMARK 3 T13: -0.0050 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 7.1782 L22: 9.2479 REMARK 3 L33: 5.1065 L12: 4.2083 REMARK 3 L13: 0.3763 L23: 1.9365 REMARK 3 S TENSOR REMARK 3 S11: -0.3415 S12: -0.4050 S13: 0.0821 REMARK 3 S21: 0.0647 S22: -0.0167 S23: 0.3634 REMARK 3 S31: -0.0018 S32: -0.2141 S33: 0.3395 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 213:269) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1522 -13.1311 -35.2146 REMARK 3 T TENSOR REMARK 3 T11: 0.2373 T22: 0.3284 REMARK 3 T33: 0.4501 T12: 0.0304 REMARK 3 T13: -0.0401 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 3.8725 L22: 2.8156 REMARK 3 L33: 5.4249 L12: 1.7421 REMARK 3 L13: 2.0658 L23: -0.6000 REMARK 3 S TENSOR REMARK 3 S11: -0.3566 S12: 0.0920 S13: 0.7686 REMARK 3 S21: 0.1199 S22: -0.0999 S23: -0.0690 REMARK 3 S31: -0.4368 S32: 0.3202 S33: 0.4751 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12326 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB 3RKK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM CITRATE DIBASIC, 0.1 M REMARK 280 SODIUM ACETATE TRIHYDRATE PH 4.6, 10 MM AZTREONAM, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.02500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.63450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.70050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.02500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.63450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.70050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.02500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.63450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.70050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.02500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.63450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.70050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -105.40100 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -105.40100 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 34 REMARK 465 ASN A 35 REMARK 465 ALA A 36 REMARK 465 ASN A 37 REMARK 465 ARG A 270 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 185 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 -154.52 50.21 REMARK 500 ILE A 109 -56.63 -127.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 281 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RKJ RELATED DB: PDB REMARK 900 THE DIFFERENT CONSTRUCT OF THE SAME PROTEIN D-38 (38 N-TERMINAL REMARK 900 RESIDUES WERE DELETED) REMARK 900 RELATED ID: 3RKK RELATED DB: PDB REMARK 900 THE SAME CONSTRUCT OF THE SAME PROTEIN BUT DIFFERENT CRYSTAL FORM REMARK 900 RELATED ID: APC105101 RELATED DB: TARGETDB DBREF 3SBL A 39 270 UNP C7C422 BLAN1_KLEPN 39 270 SEQADV 3SBL SER A 34 UNP C7C422 EXPRESSION TAG SEQADV 3SBL ASN A 35 UNP C7C422 EXPRESSION TAG SEQADV 3SBL ALA A 36 UNP C7C422 EXPRESSION TAG SEQADV 3SBL ASN A 37 UNP C7C422 EXPRESSION TAG SEQADV 3SBL TYR A 38 UNP C7C422 EXPRESSION TAG SEQRES 1 A 237 SER ASN ALA ASN TYR MET GLU THR GLY ASP GLN ARG PHE SEQRES 2 A 237 GLY ASP LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP SEQRES 3 A 237 GLN HIS THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA SEQRES 4 A 237 VAL ALA SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG SEQRES 5 A 237 VAL LEU VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR SEQRES 6 A 237 ALA GLN ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU SEQRES 7 A 237 PRO VAL ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP SEQRES 8 A 237 LYS MET GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE SEQRES 9 A 237 ALA THR TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO SEQRES 10 A 237 GLN GLU GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE SEQRES 11 A 237 ALA ALA ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN SEQRES 12 A 237 PHE GLY PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS SEQRES 13 A 237 THR SER ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP SEQRES 14 A 237 ILE ALA PHE GLY GLY CYS LEU ILE LYS ASP SER LYS ALA SEQRES 15 A 237 LYS SER LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS SEQRES 16 A 237 TYR ALA ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO SEQRES 17 A 237 LYS ALA SER MET ILE VAL MET SER HIS SER ALA PRO ASP SEQRES 18 A 237 SER ARG ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP SEQRES 19 A 237 LYS LEU ARG HET CIT A 281 13 HETNAM CIT CITRIC ACID FORMUL 2 CIT C6 H8 O7 FORMUL 3 HOH *61(H2 O) HELIX 1 1 THR A 94 ILE A 109 1 16 HELIX 2 2 HIS A 122 GLY A 127 1 6 HELIX 3 3 GLY A 128 ALA A 135 1 8 HELIX 4 4 ALA A 143 ALA A 149 1 7 HELIX 5 5 GLU A 170 ALA A 174 5 5 HELIX 6 6 HIS A 228 PHE A 240 1 13 HELIX 7 7 ARG A 256 LYS A 268 1 13 SHEET 1 A 8 GLN A 44 PHE A 46 0 SHEET 2 A 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44 SHEET 3 A 8 VAL A 58 MET A 67 -1 O GLN A 60 N ARG A 52 SHEET 4 A 8 GLY A 71 ASP A 82 -1 O ILE A 79 N TRP A 59 SHEET 5 A 8 ARG A 85 VAL A 89 -1 O VAL A 89 N LEU A 78 SHEET 6 A 8 VAL A 113 VAL A 118 1 O VAL A 117 N VAL A 88 SHEET 7 A 8 ALA A 138 ASN A 142 1 O TYR A 140 N ALA A 116 SHEET 8 A 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 B 4 LEU A 180 PHE A 183 0 SHEET 2 B 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 B 4 ILE A 203 GLY A 207 -1 O PHE A 205 N VAL A 196 SHEET 4 B 4 MET A 245 MET A 248 1 O VAL A 247 N ALA A 204 SITE 1 AC1 10 ASP A 43 VAL A 50 ARG A 52 GLN A 60 SITE 2 AC1 10 THR A 62 ASN A 76 SER A 251 ALA A 252 SITE 3 AC1 10 PRO A 253 HOH A 299 CRYST1 66.050 83.269 105.401 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009488 0.00000