HEADER LYASE 09-JUN-11 3SDU TITLE STRUCTURE OF A THREE-DOMAIN SESQUITERPENE SYNTHASE: A PROSPECTIVE TITLE 2 TARGET FOR ADVANCED BIOFUELS PRODUCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-BISABOLENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: (E)-ALPHA-BISABOLENE SYNTHASE, AGFEABIS; COMPND 5 EC: 4.2.3.38; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ABIES GRANDIS; SOURCE 3 ORGANISM_COMMON: GRAND FIR,LOWLAND FIR,LOWLAND WHITE FIR,SILVER FIR, SOURCE 4 WHITE FIR,YELLOW FIR; SOURCE 5 ORGANISM_TAXID: 46611; SOURCE 6 GENE: AG1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PSKB3; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS LYASE, TERPENE SYNTHASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.MCANDREW,P.P.PERALTA-YAHYA,A.DEGIOVANNI,J.H.PEREIRA,M.Z.HADI, AUTHOR 2 J.D.KEASLING,P.D.ADAMS REVDAT 3 28-FEB-24 3SDU 1 REMARK LINK REVDAT 2 28-MAR-12 3SDU 1 JRNL REVDAT 1 14-DEC-11 3SDU 0 JRNL AUTH R.P.MCANDREW,P.P.PERALTA-YAHYA,A.DEGIOVANNI,J.H.PEREIRA, JRNL AUTH 2 M.Z.HADI,J.D.KEASLING,P.D.ADAMS JRNL TITL STRUCTURE OF A THREE-DOMAIN SESQUITERPENE SYNTHASE: A JRNL TITL 2 PROSPECTIVE TARGET FOR ADVANCED BIOFUELS PRODUCTION. JRNL REF STRUCTURE V. 19 1876 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 22153510 JRNL DOI 10.1016/J.STR.2011.09.013 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_778) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 74659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.680 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3547 - 4.5468 1.00 5442 149 0.1633 0.1678 REMARK 3 2 4.5468 - 3.6093 1.00 5316 148 0.1446 0.1854 REMARK 3 3 3.6093 - 3.1532 1.00 5292 144 0.1722 0.2072 REMARK 3 4 3.1532 - 2.8649 1.00 5276 147 0.1738 0.2144 REMARK 3 5 2.8649 - 2.6596 1.00 5253 143 0.1683 0.1956 REMARK 3 6 2.6596 - 2.5028 1.00 5214 144 0.1629 0.2190 REMARK 3 7 2.5028 - 2.3774 1.00 5285 146 0.1618 0.2114 REMARK 3 8 2.3774 - 2.2740 1.00 5255 144 0.1602 0.2319 REMARK 3 9 2.2740 - 2.1864 1.00 5198 143 0.1568 0.2173 REMARK 3 10 2.1864 - 2.1110 1.00 5245 145 0.1615 0.2059 REMARK 3 11 2.1110 - 2.0450 1.00 5223 143 0.1730 0.2128 REMARK 3 12 2.0450 - 1.9865 1.00 5231 144 0.1923 0.2482 REMARK 3 13 1.9865 - 1.9342 0.98 5129 142 0.2201 0.2723 REMARK 3 14 1.9342 - 1.8900 0.83 4300 118 0.2785 0.3432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 32.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.91630 REMARK 3 B22 (A**2) : 7.23290 REMARK 3 B33 (A**2) : -4.31660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.12030 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6558 REMARK 3 ANGLE : 0.934 8918 REMARK 3 CHIRALITY : 0.064 976 REMARK 3 PLANARITY : 0.004 1131 REMARK 3 DIHEDRAL : 12.673 2454 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 36:73) REMARK 3 ORIGIN FOR THE GROUP (A): 96.2528 26.3476 10.6023 REMARK 3 T TENSOR REMARK 3 T11: 0.1972 T22: 0.1520 REMARK 3 T33: 0.1514 T12: -0.0238 REMARK 3 T13: 0.0393 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 4.4740 L22: 1.5725 REMARK 3 L33: 3.4313 L12: 0.5534 REMARK 3 L13: 3.2669 L23: -0.1470 REMARK 3 S TENSOR REMARK 3 S11: -0.0524 S12: 0.4082 S13: -0.1856 REMARK 3 S21: -0.0811 S22: 0.0575 S23: -0.1771 REMARK 3 S31: -0.1069 S32: 0.4275 S33: -0.0079 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 74:195) REMARK 3 ORIGIN FOR THE GROUP (A): 57.7119 4.5724 9.2506 REMARK 3 T TENSOR REMARK 3 T11: 0.2512 T22: 0.0901 REMARK 3 T33: 0.1730 T12: -0.0628 REMARK 3 T13: -0.0024 T23: -0.0526 REMARK 3 L TENSOR REMARK 3 L11: 2.0346 L22: 1.5187 REMARK 3 L33: 1.4778 L12: -0.3946 REMARK 3 L13: 0.2878 L23: -0.0574 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.1594 S13: -0.2533 REMARK 3 S21: -0.1146 S22: -0.0020 S23: 0.0397 REMARK 3 S31: 0.3500 S32: -0.1374 S33: -0.0028 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 196:223) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0134 3.9158 26.8695 REMARK 3 T TENSOR REMARK 3 T11: 0.2255 T22: 0.2650 REMARK 3 T33: 0.2022 T12: -0.0961 REMARK 3 T13: 0.0071 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 3.8578 L22: 4.5704 REMARK 3 L33: 1.5003 L12: -3.8235 REMARK 3 L13: -1.4001 L23: 0.5067 REMARK 3 S TENSOR REMARK 3 S11: -0.2651 S12: -0.5458 S13: -0.2515 REMARK 3 S21: 0.2760 S22: 0.3061 S23: 0.2226 REMARK 3 S31: 0.1690 S32: 0.0996 S33: -0.0364 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 224:293) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5514 20.7161 13.9191 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.1162 REMARK 3 T33: 0.1533 T12: -0.0390 REMARK 3 T13: -0.0040 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 3.5502 L22: 0.8479 REMARK 3 L33: 3.4190 L12: -0.2096 REMARK 3 L13: -1.0033 L23: 0.1149 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: -0.0223 S13: 0.1394 REMARK 3 S21: -0.0327 S22: -0.0377 S23: 0.1113 REMARK 3 S31: 0.0553 S32: -0.3379 S33: -0.0244 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 294:382) REMARK 3 ORIGIN FOR THE GROUP (A): 71.4462 31.2050 22.7864 REMARK 3 T TENSOR REMARK 3 T11: 0.1280 T22: 0.0939 REMARK 3 T33: 0.1578 T12: 0.0119 REMARK 3 T13: 0.0054 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 3.1244 L22: 1.7226 REMARK 3 L33: 1.7740 L12: 0.0760 REMARK 3 L13: -0.1762 L23: 0.7733 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: -0.2875 S13: 0.2831 REMARK 3 S21: 0.0369 S22: -0.0216 S23: 0.2454 REMARK 3 S31: 0.0052 S32: -0.1389 S33: 0.0566 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 383:445) REMARK 3 ORIGIN FOR THE GROUP (A): 73.1791 17.4686 33.3725 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.1780 REMARK 3 T33: 0.1273 T12: -0.0471 REMARK 3 T13: 0.0158 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.3072 L22: 5.6902 REMARK 3 L33: 1.9302 L12: 0.7269 REMARK 3 L13: 0.3801 L23: 1.7874 REMARK 3 S TENSOR REMARK 3 S11: 0.1552 S12: -0.3177 S13: -0.0325 REMARK 3 S21: 0.5537 S22: -0.2133 S23: 0.1746 REMARK 3 S31: 0.3195 S32: -0.1067 S33: 0.0690 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 446:580) REMARK 3 ORIGIN FOR THE GROUP (A): 99.5035 27.3335 28.1778 REMARK 3 T TENSOR REMARK 3 T11: 0.1056 T22: 0.1895 REMARK 3 T33: 0.1210 T12: -0.0095 REMARK 3 T13: 0.0082 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.3519 L22: 0.4464 REMARK 3 L33: 0.3136 L12: 0.4644 REMARK 3 L13: 0.1450 L23: 0.0550 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: -0.2747 S13: -0.1415 REMARK 3 S21: 0.0496 S22: -0.0828 S23: -0.1213 REMARK 3 S31: 0.0490 S32: 0.1257 S33: -0.0376 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 581:702) REMARK 3 ORIGIN FOR THE GROUP (A): 106.9884 46.1721 41.4306 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.4046 REMARK 3 T33: 0.1467 T12: -0.0992 REMARK 3 T13: 0.0073 T23: -0.1141 REMARK 3 L TENSOR REMARK 3 L11: 0.9402 L22: 0.3000 REMARK 3 L33: 0.4656 L12: -0.1889 REMARK 3 L13: -0.4117 L23: 0.1388 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: -0.5367 S13: 0.2490 REMARK 3 S21: 0.1743 S22: -0.0096 S23: -0.0602 REMARK 3 S31: -0.1636 S32: 0.2302 S33: 0.0636 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 703:770) REMARK 3 ORIGIN FOR THE GROUP (A): 91.5085 32.8396 50.6553 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.3412 REMARK 3 T33: 0.1169 T12: -0.0781 REMARK 3 T13: 0.0967 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.9091 L22: 0.8788 REMARK 3 L33: 3.1338 L12: 0.5841 REMARK 3 L13: -1.0075 L23: 0.1782 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: -0.7588 S13: -0.3197 REMARK 3 S21: 0.3047 S22: -0.1369 S23: -0.0789 REMARK 3 S31: 0.4232 S32: 0.1318 S33: 0.2475 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 771:817) REMARK 3 ORIGIN FOR THE GROUP (A): 96.7675 26.1722 33.3580 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.2664 REMARK 3 T33: 0.2473 T12: -0.0410 REMARK 3 T13: -0.0020 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 2.4377 L22: 2.9260 REMARK 3 L33: 3.1925 L12: -0.7238 REMARK 3 L13: -0.5938 L23: 1.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.0770 S12: -0.4934 S13: -0.4702 REMARK 3 S21: 0.5471 S22: -0.0041 S23: 0.1074 REMARK 3 S31: 0.4494 S32: 0.1141 S33: 0.0736 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74671 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.77200 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MRSAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW, PHASER, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, 100 MM NACL, AND 23% REMARK 280 (W/V) PEG 3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.16350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.49700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.16350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.49700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 VAL A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 CYS A 15 REMARK 465 ASP A 16 REMARK 465 LEU A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 THR A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 ILE A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 THR A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 29 REMARK 465 PRO A 30 REMARK 465 HIS A 31 REMARK 465 PRO A 32 REMARK 465 ASN A 33 REMARK 465 VAL A 34 REMARK 465 ASN A 377 REMARK 465 GLY A 378 REMARK 465 LYS A 379 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 722 CG CD CE NZ REMARK 470 ARG A 724 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 76 170.84 -57.95 REMARK 500 ASP A 173 -176.07 74.46 REMARK 500 SER A 233 36.61 -140.90 REMARK 500 ILE A 381 -93.81 -145.93 REMARK 500 CYS A 382 51.76 32.15 REMARK 500 ALA A 477 -127.10 -137.39 REMARK 500 THR A 571 -66.22 -148.91 REMARK 500 TYR A 695 90.94 -171.63 REMARK 500 ASP A 794 -103.56 -102.39 REMARK 500 PHE A 796 -15.28 168.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 819 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 566 OD2 REMARK 620 2 ASP A 570 OD2 98.7 REMARK 620 3 GST A 823 O3A 90.7 93.8 REMARK 620 4 HOH A1520 O 161.6 98.1 95.7 REMARK 620 5 HOH A1553 O 84.1 93.0 171.9 87.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 821 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 566 OD1 REMARK 620 2 ASP A 570 OD2 85.0 REMARK 620 3 GST A 823 O3A 76.8 82.6 REMARK 620 4 HOH A1217 O 154.7 94.5 78.1 REMARK 620 5 HOH A1550 O 88.3 156.4 73.8 82.1 REMARK 620 6 HOH A1552 O 87.6 90.4 163.3 117.7 112.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 820 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 713 OD1 REMARK 620 2 THR A 717 OG1 87.0 REMARK 620 3 GLU A 721 OE2 169.6 82.7 REMARK 620 4 HOH A1017 O 85.3 85.4 92.6 REMARK 620 5 HOH A1039 O 96.2 172.8 93.9 88.4 REMARK 620 6 HOH A1549 O 89.1 91.4 92.5 173.7 95.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 818 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 819 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 820 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 821 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GST A 823 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SAE RELATED DB: PDB REMARK 900 FARNESYL THIOPHOSPHATE BOUND REMARK 900 RELATED ID: 3SDQ RELATED DB: PDB REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 3SDR RELATED DB: PDB REMARK 900 PAMIDRONATE BOUND REMARK 900 RELATED ID: 3SDT RELATED DB: PDB REMARK 900 ALENDONATE BOUND REMARK 900 RELATED ID: 3SDV RELATED DB: PDB DBREF 3SDU A 1 817 UNP O81086 TPSD1_ABIGR 1 817 SEQRES 1 A 817 MET ALA GLY VAL SER ALA VAL SER LYS VAL SER SER LEU SEQRES 2 A 817 VAL CYS ASP LEU SER SER THR SER GLY LEU ILE ARG ARG SEQRES 3 A 817 THR ALA ASN PRO HIS PRO ASN VAL TRP GLY TYR ASP LEU SEQRES 4 A 817 VAL HIS SER LEU LYS SER PRO TYR ILE ASP SER SER TYR SEQRES 5 A 817 ARG GLU ARG ALA GLU VAL LEU VAL SER GLU ILE LYS ALA SEQRES 6 A 817 MET LEU ASN PRO ALA ILE THR GLY ASP GLY GLU SER MET SEQRES 7 A 817 ILE THR PRO SER ALA TYR ASP THR ALA TRP VAL ALA ARG SEQRES 8 A 817 VAL PRO ALA ILE ASP GLY SER ALA ARG PRO GLN PHE PRO SEQRES 9 A 817 GLN THR VAL ASP TRP ILE LEU LYS ASN GLN LEU LYS ASP SEQRES 10 A 817 GLY SER TRP GLY ILE GLN SER HIS PHE LEU LEU SER ASP SEQRES 11 A 817 ARG LEU LEU ALA THR LEU SER CYS VAL LEU VAL LEU LEU SEQRES 12 A 817 LYS TRP ASN VAL GLY ASP LEU GLN VAL GLU GLN GLY ILE SEQRES 13 A 817 GLU PHE ILE LYS SER ASN LEU GLU LEU VAL LYS ASP GLU SEQRES 14 A 817 THR ASP GLN ASP SER LEU VAL THR ASP PHE GLU ILE ILE SEQRES 15 A 817 PHE PRO SER LEU LEU ARG GLU ALA GLN SER LEU ARG LEU SEQRES 16 A 817 GLY LEU PRO TYR ASP LEU PRO TYR ILE HIS LEU LEU GLN SEQRES 17 A 817 THR LYS ARG GLN GLU ARG LEU ALA LYS LEU SER ARG GLU SEQRES 18 A 817 GLU ILE TYR ALA VAL PRO SER PRO LEU LEU TYR SER LEU SEQRES 19 A 817 GLU GLY ILE GLN ASP ILE VAL GLU TRP GLU ARG ILE MET SEQRES 20 A 817 GLU VAL GLN SER GLN ASP GLY SER PHE LEU SER SER PRO SEQRES 21 A 817 ALA SER THR ALA CYS VAL PHE MET HIS THR GLY ASP ALA SEQRES 22 A 817 LYS CYS LEU GLU PHE LEU ASN SER VAL MET ILE LYS PHE SEQRES 23 A 817 GLY ASN PHE VAL PRO CYS LEU TYR PRO VAL ASP LEU LEU SEQRES 24 A 817 GLU ARG LEU LEU ILE VAL ASP ASN ILE VAL ARG LEU GLY SEQRES 25 A 817 ILE TYR ARG HIS PHE GLU LYS GLU ILE LYS GLU ALA LEU SEQRES 26 A 817 ASP TYR VAL TYR ARG HIS TRP ASN GLU ARG GLY ILE GLY SEQRES 27 A 817 TRP GLY ARG LEU ASN PRO ILE ALA ASP LEU GLU THR THR SEQRES 28 A 817 ALA LEU GLY PHE ARG LEU LEU ARG LEU HIS ARG TYR ASN SEQRES 29 A 817 VAL SER PRO ALA ILE PHE ASP ASN PHE LYS ASP ALA ASN SEQRES 30 A 817 GLY LYS PHE ILE CYS SER THR GLY GLN PHE ASN LYS ASP SEQRES 31 A 817 VAL ALA SER MET LEU ASN LEU TYR ARG ALA SER GLN LEU SEQRES 32 A 817 ALA PHE PRO GLY GLU ASN ILE LEU ASP GLU ALA LYS SER SEQRES 33 A 817 PHE ALA THR LYS TYR LEU ARG GLU ALA LEU GLU LYS SER SEQRES 34 A 817 GLU THR SER SER ALA TRP ASN ASN LYS GLN ASN LEU SER SEQRES 35 A 817 GLN GLU ILE LYS TYR ALA LEU LYS THR SER TRP HIS ALA SEQRES 36 A 817 SER VAL PRO ARG VAL GLU ALA LYS ARG TYR CYS GLN VAL SEQRES 37 A 817 TYR ARG PRO ASP TYR ALA ARG ILE ALA LYS CYS VAL TYR SEQRES 38 A 817 LYS LEU PRO TYR VAL ASN ASN GLU LYS PHE LEU GLU LEU SEQRES 39 A 817 GLY LYS LEU ASP PHE ASN ILE ILE GLN SER ILE HIS GLN SEQRES 40 A 817 GLU GLU MET LYS ASN VAL THR SER TRP PHE ARG ASP SER SEQRES 41 A 817 GLY LEU PRO LEU PHE THR PHE ALA ARG GLU ARG PRO LEU SEQRES 42 A 817 GLU PHE TYR PHE LEU VAL ALA ALA GLY THR TYR GLU PRO SEQRES 43 A 817 GLN TYR ALA LYS CYS ARG PHE LEU PHE THR LYS VAL ALA SEQRES 44 A 817 CYS LEU GLN THR VAL LEU ASP ASP MET TYR ASP THR TYR SEQRES 45 A 817 GLY THR LEU ASP GLU LEU LYS LEU PHE THR GLU ALA VAL SEQRES 46 A 817 ARG ARG TRP ASP LEU SER PHE THR GLU ASN LEU PRO ASP SEQRES 47 A 817 TYR MET LYS LEU CYS TYR GLN ILE TYR TYR ASP ILE VAL SEQRES 48 A 817 HIS GLU VAL ALA TRP GLU ALA GLU LYS GLU GLN GLY ARG SEQRES 49 A 817 GLU LEU VAL SER PHE PHE ARG LYS GLY TRP GLU ASP TYR SEQRES 50 A 817 LEU LEU GLY TYR TYR GLU GLU ALA GLU TRP LEU ALA ALA SEQRES 51 A 817 GLU TYR VAL PRO THR LEU ASP GLU TYR ILE LYS ASN GLY SEQRES 52 A 817 ILE THR SER ILE GLY GLN ARG ILE LEU LEU LEU SER GLY SEQRES 53 A 817 VAL LEU ILE MET ASP GLY GLN LEU LEU SER GLN GLU ALA SEQRES 54 A 817 LEU GLU LYS VAL ASP TYR PRO GLY ARG ARG VAL LEU THR SEQRES 55 A 817 GLU LEU ASN SER LEU ILE SER ARG LEU ALA ASP ASP THR SEQRES 56 A 817 LYS THR TYR LYS ALA GLU LYS ALA ARG GLY GLU LEU ALA SEQRES 57 A 817 SER SER ILE GLU CYS TYR MET LYS ASP HIS PRO GLU CYS SEQRES 58 A 817 THR GLU GLU GLU ALA LEU ASP HIS ILE TYR SER ILE LEU SEQRES 59 A 817 GLU PRO ALA VAL LYS GLU LEU THR ARG GLU PHE LEU LYS SEQRES 60 A 817 PRO ASP ASP VAL PRO PHE ALA CYS LYS LYS MET LEU PHE SEQRES 61 A 817 GLU GLU THR ARG VAL THR MET VAL ILE PHE LYS ASP GLY SEQRES 62 A 817 ASP GLY PHE GLY VAL SER LYS LEU GLU VAL LYS ASP HIS SEQRES 63 A 817 ILE LYS GLU CYS LEU ILE GLU PRO LEU PRO LEU HET CL A 818 1 HET MG A 819 1 HET MG A 820 1 HET MG A 821 1 HET GST A 823 19 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM GST GERANYL S-THIOLODIPHOSPHATE HETSYN GST S-[(2E)-3,7-DIMETHYLOCTA-2,6-DIENYL] TRIHYDROGEN HETSYN 2 GST THIODIPHOSPHATE FORMUL 2 CL CL 1- FORMUL 3 MG 3(MG 2+) FORMUL 6 GST C10 H20 O6 P2 S FORMUL 7 HOH *732(H2 O) HELIX 1 1 TRP A 35 SER A 42 1 8 HELIX 2 2 SER A 45 ILE A 48 5 4 HELIX 3 3 ASP A 49 THR A 72 1 24 HELIX 4 4 SER A 82 VAL A 92 1 11 HELIX 5 5 PHE A 103 ASN A 113 1 11 HELIX 6 6 LEU A 127 TRP A 145 1 19 HELIX 7 7 GLY A 148 VAL A 166 1 19 HELIX 8 8 ASP A 168 GLN A 172 5 5 HELIX 9 9 ASP A 178 LEU A 193 1 16 HELIX 10 10 LEU A 201 LYS A 217 1 17 HELIX 11 11 ARG A 220 ALA A 225 5 6 HELIX 12 12 SER A 228 ILE A 237 5 10 HELIX 13 13 ARG A 245 GLN A 250 5 6 HELIX 14 14 SER A 259 GLY A 271 1 13 HELIX 15 15 ASP A 272 GLY A 287 1 16 HELIX 16 16 VAL A 296 LEU A 311 1 16 HELIX 17 17 ILE A 313 HIS A 316 5 4 HELIX 18 18 PHE A 317 TRP A 332 1 16 HELIX 19 19 ASP A 347 HIS A 361 1 15 HELIX 20 20 SER A 366 LYS A 374 5 9 HELIX 21 21 GLN A 386 GLN A 402 1 17 HELIX 22 22 GLU A 408 GLU A 427 1 20 HELIX 23 23 LYS A 428 SER A 432 5 5 HELIX 24 24 SER A 433 GLN A 439 1 7 HELIX 25 25 ASN A 440 THR A 451 1 12 HELIX 26 26 VAL A 457 GLN A 467 1 11 HELIX 27 27 ASN A 488 SER A 520 1 33 HELIX 28 28 GLY A 521 PHE A 525 5 5 HELIX 29 29 ARG A 531 ALA A 541 1 11 HELIX 30 30 GLU A 545 GLN A 547 5 3 HELIX 31 31 TYR A 548 THR A 571 1 24 HELIX 32 32 THR A 574 TRP A 588 1 15 HELIX 33 33 ASP A 589 LEU A 596 5 8 HELIX 34 34 PRO A 597 GLY A 623 1 27 HELIX 35 35 LEU A 626 ALA A 650 1 25 HELIX 36 36 THR A 655 ILE A 667 1 13 HELIX 37 37 GLY A 668 LEU A 678 1 11 HELIX 38 38 SER A 686 ASP A 694 1 9 HELIX 39 39 VAL A 700 ARG A 724 1 25 HELIX 40 40 SER A 729 HIS A 738 1 10 HELIX 41 41 THR A 742 LYS A 767 1 26 HELIX 42 42 PRO A 772 PHE A 790 1 19 HELIX 43 43 SER A 799 ILE A 812 1 14 SHEET 1 A 2 ARG A 475 ILE A 476 0 SHEET 2 A 2 VAL A 480 TYR A 481 -1 O TYR A 481 N ARG A 475 LINK OD2 ASP A 566 MG MG A 819 1555 1555 2.18 LINK OD1 ASP A 566 MG MG A 821 1555 1555 2.14 LINK OD2 ASP A 570 MG MG A 819 1555 1555 2.09 LINK OD2 ASP A 570 MG MG A 821 1555 1555 2.21 LINK OD1 ASP A 713 MG MG A 820 1555 1555 2.14 LINK OG1 THR A 717 MG MG A 820 1555 1555 2.19 LINK OE2 GLU A 721 MG MG A 820 1555 1555 2.05 LINK MG MG A 819 O3A GST A 823 1555 1555 1.99 LINK MG MG A 819 O HOH A1520 1555 1555 2.10 LINK MG MG A 819 O HOH A1553 1555 1555 2.06 LINK MG MG A 820 O HOH A1017 1555 1555 2.11 LINK MG MG A 820 O HOH A1039 1555 1555 2.09 LINK MG MG A 820 O HOH A1549 1555 1555 2.09 LINK MG MG A 821 O3A GST A 823 1555 1555 2.30 LINK MG MG A 821 O HOH A1217 1555 1555 2.07 LINK MG MG A 821 O HOH A1550 1555 1555 2.06 LINK MG MG A 821 O HOH A1552 1555 1555 2.07 CISPEP 1 TYR A 294 PRO A 295 0 -6.90 CISPEP 2 GLY A 795 PHE A 796 0 -4.06 SITE 1 AC1 3 HIS A 125 GLN A 439 ARG A 470 SITE 1 AC2 6 ASP A 566 ASP A 570 MG A 821 GST A 823 SITE 2 AC2 6 HOH A1520 HOH A1553 SITE 1 AC3 6 ASP A 713 THR A 717 GLU A 721 HOH A1017 SITE 2 AC3 6 HOH A1039 HOH A1549 SITE 1 AC4 7 ASP A 566 ASP A 570 MG A 819 GST A 823 SITE 2 AC4 7 HOH A1217 HOH A1550 HOH A1552 SITE 1 AC5 16 ARG A 529 ARG A 531 ASP A 566 ASP A 567 SITE 2 AC5 16 ASP A 570 ARG A 710 LYS A 800 MG A 819 SITE 3 AC5 16 MG A 821 HOH A1039 HOH A1217 HOH A1520 SITE 4 AC5 16 HOH A1549 HOH A1550 HOH A1553 HOH A1554 CRYST1 156.327 54.994 126.330 90.00 119.30 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006397 0.000000 0.003590 0.00000 SCALE2 0.000000 0.018184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009077 0.00000