data_3SGR # _entry.id 3SGR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SGR pdb_00003sgr 10.2210/pdb3sgr/pdb RCSB RCSB066181 ? ? WWPDB D_1000066181 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-21 2 'Structure model' 1 1 2017-07-26 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 2 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 2 'Structure model' software 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3SGR _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-06-15 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SGM 'Bromoderivative-2 of amyloid-related segment of alphaB-crystallin residues 90-100' unspecified PDB 3SGN 'Bromoderivative-8 of amyloid-related segment of alphaB-crystallin residues 90-100' unspecified PDB 3SGO 'Amyloid-related segment of alphaB-crystallin residues 90-100' unspecified PDB 3SGP 'Amyloid-related segment of alphaB-crystallin residues 90-100 mutant V91L' unspecified PDB 3SGS 'Amyloid-related segment of alphaB-crystallin residues 95-100' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Laganowsky, A.' 1 'Sawaya, M.R.' 2 'Cascio, D.' 3 'Eisenberg, D.' 4 # _citation.id primary _citation.title 'Atomic view of a toxic amyloid small oligomer.' _citation.journal_abbrev Science _citation.journal_volume 335 _citation.page_first 1228 _citation.page_last 1231 _citation.year 2012 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22403391 _citation.pdbx_database_id_DOI 10.1126/science.1213151 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Laganowsky, A.' 1 ? primary 'Liu, C.' 2 ? primary 'Sawaya, M.R.' 3 ? primary 'Whitelegge, J.P.' 4 ? primary 'Park, J.' 5 ? primary 'Zhao, M.' 6 ? primary 'Pensalfini, A.' 7 ? primary 'Soriaga, A.B.' 8 ? primary 'Landau, M.' 9 ? primary 'Teng, P.K.' 10 ? primary 'Cascio, D.' 11 ? primary 'Glabe, C.' 12 ? primary 'Eisenberg, D.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tandem repeat of amyloid-related segment of alphaB-crystallin residues 90-100 mutant V91L' 2582.128 6 ? V91L ? ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 3 water nat water 18.015 35 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GKLKVLGDVIEVGGKLKVLGDVIEV _entity_poly.pdbx_seq_one_letter_code_can GKLKVLGDVIEVGGKLKVLGDVIEV _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LYS n 1 3 LEU n 1 4 LYS n 1 5 VAL n 1 6 LEU n 1 7 GLY n 1 8 ASP n 1 9 VAL n 1 10 ILE n 1 11 GLU n 1 12 VAL n 1 13 GLY n 1 14 GLY n 1 15 LYS n 1 16 LEU n 1 17 LYS n 1 18 VAL n 1 19 LEU n 1 20 GLY n 1 21 ASP n 1 22 VAL n 1 23 ILE n 1 24 GLU n 1 25 VAL n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 2 12 ? ? CRYAB ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET15-MBP ? ? 1 2 sample ? 15 25 ? ? CRYAB ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET15-MBP ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 LYS 2 1 1 LYS LYS A . n A 1 3 LEU 3 2 2 LEU LEU A . n A 1 4 LYS 4 3 3 LYS LYS A . n A 1 5 VAL 5 4 4 VAL VAL A . n A 1 6 LEU 6 5 5 LEU LEU A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 ASP 8 7 7 ASP ASP A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 ILE 10 9 9 ILE ILE A . n A 1 11 GLU 11 10 10 GLU GLU A . n A 1 12 VAL 12 11 11 VAL VAL A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 LYS 15 14 14 LYS LYS A . n A 1 16 LEU 16 15 15 LEU LEU A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 VAL 18 17 17 VAL VAL A . n A 1 19 LEU 19 18 18 LEU LEU A . n A 1 20 GLY 20 19 19 GLY GLY A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 VAL 22 21 21 VAL VAL A . n A 1 23 ILE 23 22 22 ILE ILE A . n A 1 24 GLU 24 23 23 GLU GLU A . n A 1 25 VAL 25 24 24 VAL VAL A . n B 1 1 GLY 1 0 0 GLY GLY B . n B 1 2 LYS 2 1 1 LYS LYS B . n B 1 3 LEU 3 2 2 LEU LEU B . n B 1 4 LYS 4 3 3 LYS LYS B . n B 1 5 VAL 5 4 4 VAL VAL B . n B 1 6 LEU 6 5 5 LEU LEU B . n B 1 7 GLY 7 6 6 GLY GLY B . n B 1 8 ASP 8 7 7 ASP ASP B . n B 1 9 VAL 9 8 8 VAL VAL B . n B 1 10 ILE 10 9 9 ILE ILE B . n B 1 11 GLU 11 10 10 GLU GLU B . n B 1 12 VAL 12 11 11 VAL VAL B . n B 1 13 GLY 13 12 12 GLY GLY B . n B 1 14 GLY 14 13 13 GLY GLY B . n B 1 15 LYS 15 14 14 LYS LYS B . n B 1 16 LEU 16 15 15 LEU LEU B . n B 1 17 LYS 17 16 16 LYS LYS B . n B 1 18 VAL 18 17 17 VAL VAL B . n B 1 19 LEU 19 18 18 LEU LEU B . n B 1 20 GLY 20 19 19 GLY GLY B . n B 1 21 ASP 21 20 20 ASP ASP B . n B 1 22 VAL 22 21 21 VAL VAL B . n B 1 23 ILE 23 22 22 ILE ILE B . n B 1 24 GLU 24 23 23 GLU GLU B . n B 1 25 VAL 25 24 24 VAL VAL B . n C 1 1 GLY 1 0 ? ? ? C . n C 1 2 LYS 2 1 1 LYS LYS C . n C 1 3 LEU 3 2 2 LEU LEU C . n C 1 4 LYS 4 3 3 LYS LYS C . n C 1 5 VAL 5 4 4 VAL VAL C . n C 1 6 LEU 6 5 5 LEU LEU C . n C 1 7 GLY 7 6 6 GLY GLY C . n C 1 8 ASP 8 7 7 ASP ASP C . n C 1 9 VAL 9 8 8 VAL VAL C . n C 1 10 ILE 10 9 9 ILE ILE C . n C 1 11 GLU 11 10 10 GLU GLU C . n C 1 12 VAL 12 11 11 VAL VAL C . n C 1 13 GLY 13 12 12 GLY GLY C . n C 1 14 GLY 14 13 13 GLY GLY C . n C 1 15 LYS 15 14 14 LYS LYS C . n C 1 16 LEU 16 15 15 LEU LEU C . n C 1 17 LYS 17 16 16 LYS LYS C . n C 1 18 VAL 18 17 17 VAL VAL C . n C 1 19 LEU 19 18 18 LEU LEU C . n C 1 20 GLY 20 19 19 GLY GLY C . n C 1 21 ASP 21 20 20 ASP ASP C . n C 1 22 VAL 22 21 21 VAL VAL C . n C 1 23 ILE 23 22 22 ILE ILE C . n C 1 24 GLU 24 23 23 GLU GLU C . n C 1 25 VAL 25 24 24 VAL VAL C . n D 1 1 GLY 1 0 0 GLY GLY D . n D 1 2 LYS 2 1 1 LYS LYS D . n D 1 3 LEU 3 2 2 LEU LEU D . n D 1 4 LYS 4 3 3 LYS LYS D . n D 1 5 VAL 5 4 4 VAL VAL D . n D 1 6 LEU 6 5 5 LEU LEU D . n D 1 7 GLY 7 6 6 GLY GLY D . n D 1 8 ASP 8 7 7 ASP ASP D . n D 1 9 VAL 9 8 8 VAL VAL D . n D 1 10 ILE 10 9 9 ILE ILE D . n D 1 11 GLU 11 10 10 GLU GLU D . n D 1 12 VAL 12 11 11 VAL VAL D . n D 1 13 GLY 13 12 12 GLY GLY D . n D 1 14 GLY 14 13 13 GLY GLY D . n D 1 15 LYS 15 14 14 LYS LYS D . n D 1 16 LEU 16 15 15 LEU LEU D . n D 1 17 LYS 17 16 16 LYS LYS D . n D 1 18 VAL 18 17 17 VAL VAL D . n D 1 19 LEU 19 18 18 LEU LEU D . n D 1 20 GLY 20 19 19 GLY GLY D . n D 1 21 ASP 21 20 20 ASP ASP D . n D 1 22 VAL 22 21 21 VAL VAL D . n D 1 23 ILE 23 22 22 ILE ILE D . n D 1 24 GLU 24 23 23 GLU GLU D . n D 1 25 VAL 25 24 24 VAL VAL D . n E 1 1 GLY 1 0 0 GLY GLY E . n E 1 2 LYS 2 1 1 LYS LYS E . n E 1 3 LEU 3 2 2 LEU LEU E . n E 1 4 LYS 4 3 3 LYS LYS E . n E 1 5 VAL 5 4 4 VAL VAL E . n E 1 6 LEU 6 5 5 LEU LEU E . n E 1 7 GLY 7 6 6 GLY GLY E . n E 1 8 ASP 8 7 7 ASP ASP E . n E 1 9 VAL 9 8 8 VAL VAL E . n E 1 10 ILE 10 9 9 ILE ILE E . n E 1 11 GLU 11 10 10 GLU GLU E . n E 1 12 VAL 12 11 11 VAL VAL E . n E 1 13 GLY 13 12 12 GLY GLY E . n E 1 14 GLY 14 13 13 GLY GLY E . n E 1 15 LYS 15 14 14 LYS LYS E . n E 1 16 LEU 16 15 15 LEU LEU E . n E 1 17 LYS 17 16 16 LYS LYS E . n E 1 18 VAL 18 17 17 VAL VAL E . n E 1 19 LEU 19 18 18 LEU LEU E . n E 1 20 GLY 20 19 19 GLY GLY E . n E 1 21 ASP 21 20 20 ASP ASP E . n E 1 22 VAL 22 21 21 VAL VAL E . n E 1 23 ILE 23 22 22 ILE ILE E . n E 1 24 GLU 24 23 23 GLU GLU E . n E 1 25 VAL 25 24 24 VAL VAL E . n F 1 1 GLY 1 0 0 GLY GLY F . n F 1 2 LYS 2 1 1 LYS LYS F . n F 1 3 LEU 3 2 2 LEU LEU F . n F 1 4 LYS 4 3 3 LYS LYS F . n F 1 5 VAL 5 4 4 VAL VAL F . n F 1 6 LEU 6 5 5 LEU LEU F . n F 1 7 GLY 7 6 6 GLY GLY F . n F 1 8 ASP 8 7 7 ASP ASP F . n F 1 9 VAL 9 8 8 VAL VAL F . n F 1 10 ILE 10 9 9 ILE ILE F . n F 1 11 GLU 11 10 10 GLU GLU F . n F 1 12 VAL 12 11 11 VAL VAL F . n F 1 13 GLY 13 12 12 GLY GLY F . n F 1 14 GLY 14 13 13 GLY GLY F . n F 1 15 LYS 15 14 14 LYS LYS F . n F 1 16 LEU 16 15 15 LEU LEU F . n F 1 17 LYS 17 16 16 LYS LYS F . n F 1 18 VAL 18 17 17 VAL VAL F . n F 1 19 LEU 19 18 18 LEU LEU F . n F 1 20 GLY 20 19 19 GLY GLY F . n F 1 21 ASP 21 20 20 ASP ASP F . n F 1 22 VAL 22 21 21 VAL VAL F . n F 1 23 ILE 23 22 22 ILE ILE F . n F 1 24 GLU 24 23 23 GLU GLU F . n F 1 25 VAL 25 24 24 VAL VAL F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MPD 1 25 1 MPD MPD E . H 2 MPD 1 26 1 MPD MPD E . I 3 HOH 1 25 14 HOH HOH A . I 3 HOH 2 26 26 HOH HOH A . I 3 HOH 3 33 33 HOH HOH A . J 3 HOH 1 25 25 HOH HOH B . J 3 HOH 2 26 5 HOH HOH B . J 3 HOH 3 27 9 HOH HOH B . J 3 HOH 4 28 20 HOH HOH B . J 3 HOH 5 29 21 HOH HOH B . J 3 HOH 6 34 34 HOH HOH B . K 3 HOH 1 25 4 HOH HOH C . K 3 HOH 2 26 19 HOH HOH C . K 3 HOH 3 31 31 HOH HOH C . K 3 HOH 4 32 32 HOH HOH C . K 3 HOH 5 35 35 HOH HOH C . L 3 HOH 1 25 8 HOH HOH D . L 3 HOH 2 26 24 HOH HOH D . M 3 HOH 1 27 1 HOH HOH E . M 3 HOH 2 28 28 HOH HOH E . M 3 HOH 3 29 29 HOH HOH E . M 3 HOH 4 30 2 HOH HOH E . M 3 HOH 5 31 6 HOH HOH E . M 3 HOH 6 32 10 HOH HOH E . M 3 HOH 7 33 11 HOH HOH E . M 3 HOH 8 34 12 HOH HOH E . M 3 HOH 9 35 15 HOH HOH E . M 3 HOH 10 36 36 HOH HOH E . M 3 HOH 11 37 18 HOH HOH E . M 3 HOH 12 38 23 HOH HOH E . N 3 HOH 1 25 7 HOH HOH F . N 3 HOH 2 26 13 HOH HOH F . N 3 HOH 3 27 27 HOH HOH F . N 3 HOH 4 28 16 HOH HOH F . N 3 HOH 5 29 17 HOH HOH F . N 3 HOH 6 30 30 HOH HOH F . N 3 HOH 7 31 22 HOH HOH F . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 D GLU 10 ? CG ? D GLU 11 CG 2 1 Y 1 D GLU 10 ? CD ? D GLU 11 CD 3 1 Y 1 D GLU 10 ? OE1 ? D GLU 11 OE1 4 1 Y 1 D GLU 10 ? OE2 ? D GLU 11 OE2 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 BUSTER-TNT 'BUSTER 2.8.0' ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 SHELXD . ? ? ? ? phasing ? ? ? 6 BUSTER 2.8.0 ? ? ? ? refinement ? ? ? # _cell.length_a 52.340 _cell.length_b 52.340 _cell.length_c 87.330 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3SGR _cell.pdbx_unique_axis ? _cell.Z_PDB 36 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61' _symmetry.entry_id 3SGR _symmetry.Int_Tables_number 169 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3SGR _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.1M SODIUM CACODYLATE pH 6.5, 30% MPD, 0.2M MAGNESIUM ACETATE, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-10-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 3SGR _reflns.d_resolution_high 2.010 _reflns.number_obs 8991 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_netI_over_sigmaI 10.530 _reflns.percent_possible_obs 99.000 _reflns.B_iso_Wilson_estimate 55.449 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.67 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.010 2.060 1748 ? 633 0.012 0.820 ? ? ? ? ? 95.800 1 1 2.060 2.120 2292 ? 648 0.012 1.440 ? ? ? ? ? 99.100 2 1 2.120 2.180 2368 ? 638 0.012 1.790 ? ? ? ? ? 100.000 3 1 2.180 2.250 2220 ? 603 0.012 2.260 ? ? ? ? ? 99.200 4 1 2.250 2.320 2156 ? 591 0.012 2.680 ? ? ? ? ? 99.500 5 1 2.320 2.400 2191 ? 582 0.012 3.230 ? ? ? ? ? 100.000 6 1 2.400 2.490 2128 ? 568 0.012 4.570 ? ? ? ? ? 100.000 7 1 2.490 2.590 1961 ? 526 0.012 6.330 ? ? ? ? ? 100.000 8 1 2.590 2.710 1866 ? 505 0.012 8.260 ? ? ? ? ? 99.800 9 1 2.710 2.840 1853 ? 500 0.012 10.660 ? ? ? ? ? 100.000 10 1 2.840 2.990 1748 ? 476 0.012 13.220 ? ? ? ? ? 99.800 11 1 2.990 3.180 1582 ? 435 0.012 16.380 ? ? ? ? ? 100.000 12 1 3.180 3.390 1529 ? 424 0.012 20.060 ? ? ? ? ? 99.300 13 1 3.390 3.670 1358 ? 386 0.012 24.770 ? ? ? ? ? 99.200 14 1 3.670 4.020 1241 ? 358 0.012 25.610 ? ? ? ? ? 99.400 15 1 4.020 4.490 1107 ? 317 0.012 27.740 ? ? ? ? ? 98.800 16 1 4.490 5.180 1010 ? 290 0.012 28.670 ? ? ? ? ? 100.000 17 1 5.180 6.350 819 ? 246 0.012 27.300 ? ? ? ? ? 100.000 18 1 6.350 8.980 634 ? 186 0.012 27.890 ? ? ? ? ? 97.400 19 1 8.980 ? 239 ? 79 0.012 26.980 ? ? ? ? ? 74.500 20 1 # _refine.entry_id 3SGR _refine.ls_d_res_high 2.1700 _refine.ls_d_res_low 19.6700 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 6421 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1889 _refine.ls_R_factor_R_work 0.1843 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2340 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.7500 _refine.ls_number_reflns_R_free 626 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 63.9852 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -3.5497 _refine.aniso_B[2][2] -3.5497 _refine.aniso_B[3][3] 7.0995 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9535 _refine.correlation_coeff_Fo_to_Fc_free 0.9319 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 153.830 _refine.B_iso_min 33.270 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3SGR _refine_analyze.Luzzati_coordinate_error_obs 0.338 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1078 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 35 _refine_hist.number_atoms_total 1129 _refine_hist.d_res_high 2.1700 _refine_hist.d_res_low 19.6700 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 408 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 29 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 143 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1086 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 134 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1118 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1086 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1450 1.400 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.230 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 21.310 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.1700 _refine_ls_shell.d_res_low 2.4300 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 1184 _refine_ls_shell.R_factor_all 0.2239 _refine_ls_shell.R_factor_R_work 0.2209 _refine_ls_shell.R_factor_R_free 0.2549 _refine_ls_shell.percent_reflns_R_free 9.0600 _refine_ls_shell.number_reflns_R_free 118 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1302 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3SGR _struct.title 'Tandem repeat of amyloid-related segment of alphaB-crystallin residues 90-100 mutant V91L' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SGR _struct_keywords.text 'amyloid, amyloid oligomer, beta cylindrin, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CRYAB_HUMAN _struct_ref.pdbx_db_accession P02511 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 90 _struct_ref.pdbx_seq_one_letter_code KVKVLGDVIEV _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3SGR A 2 ? 12 ? P02511 90 ? 100 ? 1 11 2 1 3SGR A 15 ? 25 ? P02511 90 ? 100 ? 14 24 3 1 3SGR B 2 ? 12 ? P02511 90 ? 100 ? 1 11 4 1 3SGR B 15 ? 25 ? P02511 90 ? 100 ? 14 24 5 1 3SGR C 2 ? 12 ? P02511 90 ? 100 ? 1 11 6 1 3SGR C 15 ? 25 ? P02511 90 ? 100 ? 14 24 7 1 3SGR D 2 ? 12 ? P02511 90 ? 100 ? 1 11 8 1 3SGR D 15 ? 25 ? P02511 90 ? 100 ? 14 24 9 1 3SGR E 2 ? 12 ? P02511 90 ? 100 ? 1 11 10 1 3SGR E 15 ? 25 ? P02511 90 ? 100 ? 14 24 11 1 3SGR F 2 ? 12 ? P02511 90 ? 100 ? 1 11 12 1 3SGR F 15 ? 25 ? P02511 90 ? 100 ? 14 24 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3SGR GLY A 1 ? UNP P02511 ? ? 'expression tag' 0 1 1 3SGR LEU A 3 ? UNP P02511 VAL 91 'engineered mutation' 2 2 2 3SGR GLY A 13 ? UNP P02511 ? ? linker 12 3 2 3SGR GLY A 14 ? UNP P02511 ? ? linker 13 4 2 3SGR LEU A 16 ? UNP P02511 VAL 91 'engineered mutation' 15 5 3 3SGR GLY B 1 ? UNP P02511 ? ? 'expression tag' 0 6 3 3SGR LEU B 3 ? UNP P02511 VAL 91 'engineered mutation' 2 7 4 3SGR GLY B 13 ? UNP P02511 ? ? linker 12 8 4 3SGR GLY B 14 ? UNP P02511 ? ? linker 13 9 4 3SGR LEU B 16 ? UNP P02511 VAL 91 'engineered mutation' 15 10 5 3SGR GLY C 1 ? UNP P02511 ? ? 'expression tag' 0 11 5 3SGR LEU C 3 ? UNP P02511 VAL 91 'engineered mutation' 2 12 6 3SGR GLY C 13 ? UNP P02511 ? ? linker 12 13 6 3SGR GLY C 14 ? UNP P02511 ? ? linker 13 14 6 3SGR LEU C 16 ? UNP P02511 VAL 91 'engineered mutation' 15 15 7 3SGR GLY D 1 ? UNP P02511 ? ? 'expression tag' 0 16 7 3SGR LEU D 3 ? UNP P02511 VAL 91 'engineered mutation' 2 17 8 3SGR GLY D 13 ? UNP P02511 ? ? linker 12 18 8 3SGR GLY D 14 ? UNP P02511 ? ? linker 13 19 8 3SGR LEU D 16 ? UNP P02511 VAL 91 'engineered mutation' 15 20 9 3SGR GLY E 1 ? UNP P02511 ? ? 'expression tag' 0 21 9 3SGR LEU E 3 ? UNP P02511 VAL 91 'engineered mutation' 2 22 10 3SGR GLY E 13 ? UNP P02511 ? ? linker 12 23 10 3SGR GLY E 14 ? UNP P02511 ? ? linker 13 24 10 3SGR LEU E 16 ? UNP P02511 VAL 91 'engineered mutation' 15 25 11 3SGR GLY F 1 ? UNP P02511 ? ? 'expression tag' 0 26 11 3SGR LEU F 3 ? UNP P02511 VAL 91 'engineered mutation' 2 27 12 3SGR GLY F 13 ? UNP P02511 ? ? linker 12 28 12 3SGR GLY F 14 ? UNP P02511 ? ? linker 13 29 12 3SGR LEU F 16 ? UNP P02511 VAL 91 'engineered mutation' 15 30 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA hexameric 6 2 author_and_software_defined_assembly PISA hexameric 6 3 author_and_software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6860 ? 1 MORE -58 ? 1 'SSA (A^2)' 8540 ? 2 'ABSA (A^2)' 6890 ? 2 MORE -58 ? 2 'SSA (A^2)' 8520 ? 3 'ABSA (A^2)' 6920 ? 3 MORE -56 ? 3 'SSA (A^2)' 8490 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,I,K,L 1 2 B,E,F,G,H,J,M,N 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 1 A,C,D,I,K,L 3 3 B,E,F,G,H,J,M,N # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_455 -y-1,x-y,z+1/3 -0.5000000000 -0.8660254038 0.0000000000 -52.3400000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 29.1100000000 3 'crystal symmetry operation' 6_555 x-y,x,z+1/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 14.5550000000 # _struct_biol.id 1 _struct_biol.details 'The biological unit is a three stranded beta cylindrin. The asymmetric unit is formed by two beta cylindrins.' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 3 ? VAL A 12 ? LEU A 2 VAL A 11 A 2 LYS A 15 ? GLU A 24 ? LYS A 14 GLU A 23 A 3 LYS D 15 ? GLU D 24 ? LYS D 14 GLU D 23 A 4 LEU D 3 ? VAL D 12 ? LEU D 2 VAL D 11 A 5 LYS C 15 ? GLU C 24 ? LYS C 14 GLU C 23 A 6 LEU C 3 ? VAL C 12 ? LEU C 2 VAL C 11 A 7 LEU A 3 ? VAL A 12 ? LEU A 2 VAL A 11 B 1 LEU B 3 ? VAL B 12 ? LEU B 2 VAL B 11 B 2 LYS B 15 ? GLU B 24 ? LYS B 14 GLU B 23 B 3 LYS F 15 ? GLU F 24 ? LYS F 14 GLU F 23 B 4 LEU F 3 ? VAL F 12 ? LEU F 2 VAL F 11 B 5 LYS E 2 ? VAL E 12 ? LYS E 1 VAL E 11 B 6 LYS E 15 ? VAL E 25 ? LYS E 14 VAL E 24 B 7 LEU B 3 ? VAL B 12 ? LEU B 2 VAL B 11 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 10 ? N ILE A 9 O LYS A 17 ? O LYS A 16 A 2 3 N VAL A 22 ? N VAL A 21 O LEU D 16 ? O LEU D 15 A 3 4 O ILE D 23 ? O ILE D 22 N LYS D 4 ? N LYS D 3 A 4 5 O VAL D 5 ? O VAL D 4 N GLY C 20 ? N GLY C 19 A 5 6 O ILE C 23 ? O ILE C 22 N LYS C 4 ? N LYS C 3 A 6 7 O LEU C 3 ? O LEU C 2 N VAL A 9 ? N VAL A 8 B 1 2 N ILE B 10 ? N ILE B 9 O LYS B 17 ? O LYS B 16 B 2 3 N VAL B 18 ? N VAL B 17 O GLY F 20 ? O GLY F 19 B 3 4 O LYS F 17 ? O LYS F 16 N ILE F 10 ? N ILE F 9 B 4 5 O GLY F 7 ? O GLY F 6 N VAL E 5 ? N VAL E 4 B 5 6 N ILE E 10 ? N ILE E 9 O LYS E 17 ? O LYS E 16 B 6 7 O VAL E 18 ? O VAL E 17 N GLY B 7 ? N GLY B 6 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software E MPD 25 ? 3 'BINDING SITE FOR RESIDUE MPD E 25' AC2 Software E MPD 26 ? 4 'BINDING SITE FOR RESIDUE MPD E 26' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 VAL D 12 ? VAL D 11 . ? 1_555 ? 2 AC1 3 LEU E 3 ? LEU E 2 . ? 1_555 ? 3 AC1 3 VAL F 9 ? VAL F 8 . ? 1_555 ? 4 AC2 4 VAL B 9 ? VAL B 8 . ? 1_555 ? 5 AC2 4 LEU C 6 ? LEU C 5 . ? 3_444 ? 6 AC2 4 LEU E 16 ? LEU E 15 . ? 1_555 ? 7 AC2 4 HOH M . ? HOH E 31 . ? 1_555 ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -8.2293 -25.7999 -7.4886 -0.1508 0.0123 0.0459 0.1296 -0.0558 -0.1014 5.9965 9.8338 5.2982 4.6593 1.5710 1.4364 0.2363 -0.2949 0.0586 -0.4493 -0.1073 0.0389 -0.0539 -0.1108 -0.5060 'X-RAY DIFFRACTION' 2 ? refined -28.1533 -27.3348 -20.1207 -0.2103 -0.0324 -0.0060 -0.0754 0.0042 -0.0404 11.2618 3.5380 12.2421 1.9452 2.1811 2.1005 0.1893 -0.2744 0.0851 -0.5907 0.3793 0.2237 0.3741 -0.6644 -0.0869 'X-RAY DIFFRACTION' 3 ? refined -2.9382 -26.6459 -4.9424 -0.1361 -0.1384 0.0517 0.0875 0.0479 -0.0428 8.5834 8.9352 8.4387 -0.5569 1.3748 1.2409 0.1150 -0.2448 0.1298 -0.5645 -0.0357 -0.8802 0.2446 -0.2187 0.1236 'X-RAY DIFFRACTION' 4 ? refined -4.7822 -28.9612 -10.1202 -0.2360 -0.0582 0.0163 0.0669 -0.0292 -0.0430 9.7842 9.5459 11.6849 3.8976 -0.2762 0.4545 0.0903 -0.1703 0.0800 0.1567 -0.3768 -0.3495 -0.7213 0.0327 -0.1168 'X-RAY DIFFRACTION' 5 ? refined -26.5002 -32.0927 -21.9012 -0.0881 -0.0525 0.0194 0.0072 -0.0290 -0.0216 17.6578 3.4230 5.9663 1.5594 3.0821 0.0458 0.9981 -0.3747 -0.6234 -0.5042 -0.9728 0.0683 -0.0524 0.5605 -0.1868 'X-RAY DIFFRACTION' 6 ? refined -24.1500 -27.3546 -23.7617 -0.1610 -0.0548 0.0080 0.0621 0.0125 0.0404 10.3007 1.8119 11.4310 -2.1115 2.7110 -1.7037 0.1006 -0.1871 0.0865 0.3852 0.4921 -0.2665 -0.1413 -0.7061 0.1118 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 24 '{ A|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 0 B 24 '{ B|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 1 C 24 '{ C|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 0 D 24 '{ D|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 E 0 E 24 '{ E|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 F 0 F 24 '{ F|* }' ? ? ? ? ? # _phasing.method SIRAS # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id C _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id C _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASP N N N N 1 ASP CA C N S 2 ASP C C N N 3 ASP O O N N 4 ASP CB C N N 5 ASP CG C N N 6 ASP OD1 O N N 7 ASP OD2 O N N 8 ASP OXT O N N 9 ASP H H N N 10 ASP H2 H N N 11 ASP HA H N N 12 ASP HB2 H N N 13 ASP HB3 H N N 14 ASP HD2 H N N 15 ASP HXT H N N 16 GLU N N N N 17 GLU CA C N S 18 GLU C C N N 19 GLU O O N N 20 GLU CB C N N 21 GLU CG C N N 22 GLU CD C N N 23 GLU OE1 O N N 24 GLU OE2 O N N 25 GLU OXT O N N 26 GLU H H N N 27 GLU H2 H N N 28 GLU HA H N N 29 GLU HB2 H N N 30 GLU HB3 H N N 31 GLU HG2 H N N 32 GLU HG3 H N N 33 GLU HE2 H N N 34 GLU HXT H N N 35 GLY N N N N 36 GLY CA C N N 37 GLY C C N N 38 GLY O O N N 39 GLY OXT O N N 40 GLY H H N N 41 GLY H2 H N N 42 GLY HA2 H N N 43 GLY HA3 H N N 44 GLY HXT H N N 45 HOH O O N N 46 HOH H1 H N N 47 HOH H2 H N N 48 ILE N N N N 49 ILE CA C N S 50 ILE C C N N 51 ILE O O N N 52 ILE CB C N S 53 ILE CG1 C N N 54 ILE CG2 C N N 55 ILE CD1 C N N 56 ILE OXT O N N 57 ILE H H N N 58 ILE H2 H N N 59 ILE HA H N N 60 ILE HB H N N 61 ILE HG12 H N N 62 ILE HG13 H N N 63 ILE HG21 H N N 64 ILE HG22 H N N 65 ILE HG23 H N N 66 ILE HD11 H N N 67 ILE HD12 H N N 68 ILE HD13 H N N 69 ILE HXT H N N 70 LEU N N N N 71 LEU CA C N S 72 LEU C C N N 73 LEU O O N N 74 LEU CB C N N 75 LEU CG C N N 76 LEU CD1 C N N 77 LEU CD2 C N N 78 LEU OXT O N N 79 LEU H H N N 80 LEU H2 H N N 81 LEU HA H N N 82 LEU HB2 H N N 83 LEU HB3 H N N 84 LEU HG H N N 85 LEU HD11 H N N 86 LEU HD12 H N N 87 LEU HD13 H N N 88 LEU HD21 H N N 89 LEU HD22 H N N 90 LEU HD23 H N N 91 LEU HXT H N N 92 LYS N N N N 93 LYS CA C N S 94 LYS C C N N 95 LYS O O N N 96 LYS CB C N N 97 LYS CG C N N 98 LYS CD C N N 99 LYS CE C N N 100 LYS NZ N N N 101 LYS OXT O N N 102 LYS H H N N 103 LYS H2 H N N 104 LYS HA H N N 105 LYS HB2 H N N 106 LYS HB3 H N N 107 LYS HG2 H N N 108 LYS HG3 H N N 109 LYS HD2 H N N 110 LYS HD3 H N N 111 LYS HE2 H N N 112 LYS HE3 H N N 113 LYS HZ1 H N N 114 LYS HZ2 H N N 115 LYS HZ3 H N N 116 LYS HXT H N N 117 MPD C1 C N N 118 MPD C2 C N N 119 MPD O2 O N N 120 MPD CM C N N 121 MPD C3 C N N 122 MPD C4 C N S 123 MPD O4 O N N 124 MPD C5 C N N 125 MPD H11 H N N 126 MPD H12 H N N 127 MPD H13 H N N 128 MPD HO2 H N N 129 MPD HM1 H N N 130 MPD HM2 H N N 131 MPD HM3 H N N 132 MPD H31 H N N 133 MPD H32 H N N 134 MPD H4 H N N 135 MPD HO4 H N N 136 MPD H51 H N N 137 MPD H52 H N N 138 MPD H53 H N N 139 VAL N N N N 140 VAL CA C N S 141 VAL C C N N 142 VAL O O N N 143 VAL CB C N N 144 VAL CG1 C N N 145 VAL CG2 C N N 146 VAL OXT O N N 147 VAL H H N N 148 VAL H2 H N N 149 VAL HA H N N 150 VAL HB H N N 151 VAL HG11 H N N 152 VAL HG12 H N N 153 VAL HG13 H N N 154 VAL HG21 H N N 155 VAL HG22 H N N 156 VAL HG23 H N N 157 VAL HXT H N N 158 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP N CA sing N N 1 ASP N H sing N N 2 ASP N H2 sing N N 3 ASP CA C sing N N 4 ASP CA CB sing N N 5 ASP CA HA sing N N 6 ASP C O doub N N 7 ASP C OXT sing N N 8 ASP CB CG sing N N 9 ASP CB HB2 sing N N 10 ASP CB HB3 sing N N 11 ASP CG OD1 doub N N 12 ASP CG OD2 sing N N 13 ASP OD2 HD2 sing N N 14 ASP OXT HXT sing N N 15 GLU N CA sing N N 16 GLU N H sing N N 17 GLU N H2 sing N N 18 GLU CA C sing N N 19 GLU CA CB sing N N 20 GLU CA HA sing N N 21 GLU C O doub N N 22 GLU C OXT sing N N 23 GLU CB CG sing N N 24 GLU CB HB2 sing N N 25 GLU CB HB3 sing N N 26 GLU CG CD sing N N 27 GLU CG HG2 sing N N 28 GLU CG HG3 sing N N 29 GLU CD OE1 doub N N 30 GLU CD OE2 sing N N 31 GLU OE2 HE2 sing N N 32 GLU OXT HXT sing N N 33 GLY N CA sing N N 34 GLY N H sing N N 35 GLY N H2 sing N N 36 GLY CA C sing N N 37 GLY CA HA2 sing N N 38 GLY CA HA3 sing N N 39 GLY C O doub N N 40 GLY C OXT sing N N 41 GLY OXT HXT sing N N 42 HOH O H1 sing N N 43 HOH O H2 sing N N 44 ILE N CA sing N N 45 ILE N H sing N N 46 ILE N H2 sing N N 47 ILE CA C sing N N 48 ILE CA CB sing N N 49 ILE CA HA sing N N 50 ILE C O doub N N 51 ILE C OXT sing N N 52 ILE CB CG1 sing N N 53 ILE CB CG2 sing N N 54 ILE CB HB sing N N 55 ILE CG1 CD1 sing N N 56 ILE CG1 HG12 sing N N 57 ILE CG1 HG13 sing N N 58 ILE CG2 HG21 sing N N 59 ILE CG2 HG22 sing N N 60 ILE CG2 HG23 sing N N 61 ILE CD1 HD11 sing N N 62 ILE CD1 HD12 sing N N 63 ILE CD1 HD13 sing N N 64 ILE OXT HXT sing N N 65 LEU N CA sing N N 66 LEU N H sing N N 67 LEU N H2 sing N N 68 LEU CA C sing N N 69 LEU CA CB sing N N 70 LEU CA HA sing N N 71 LEU C O doub N N 72 LEU C OXT sing N N 73 LEU CB CG sing N N 74 LEU CB HB2 sing N N 75 LEU CB HB3 sing N N 76 LEU CG CD1 sing N N 77 LEU CG CD2 sing N N 78 LEU CG HG sing N N 79 LEU CD1 HD11 sing N N 80 LEU CD1 HD12 sing N N 81 LEU CD1 HD13 sing N N 82 LEU CD2 HD21 sing N N 83 LEU CD2 HD22 sing N N 84 LEU CD2 HD23 sing N N 85 LEU OXT HXT sing N N 86 LYS N CA sing N N 87 LYS N H sing N N 88 LYS N H2 sing N N 89 LYS CA C sing N N 90 LYS CA CB sing N N 91 LYS CA HA sing N N 92 LYS C O doub N N 93 LYS C OXT sing N N 94 LYS CB CG sing N N 95 LYS CB HB2 sing N N 96 LYS CB HB3 sing N N 97 LYS CG CD sing N N 98 LYS CG HG2 sing N N 99 LYS CG HG3 sing N N 100 LYS CD CE sing N N 101 LYS CD HD2 sing N N 102 LYS CD HD3 sing N N 103 LYS CE NZ sing N N 104 LYS CE HE2 sing N N 105 LYS CE HE3 sing N N 106 LYS NZ HZ1 sing N N 107 LYS NZ HZ2 sing N N 108 LYS NZ HZ3 sing N N 109 LYS OXT HXT sing N N 110 MPD C1 C2 sing N N 111 MPD C1 H11 sing N N 112 MPD C1 H12 sing N N 113 MPD C1 H13 sing N N 114 MPD C2 O2 sing N N 115 MPD C2 CM sing N N 116 MPD C2 C3 sing N N 117 MPD O2 HO2 sing N N 118 MPD CM HM1 sing N N 119 MPD CM HM2 sing N N 120 MPD CM HM3 sing N N 121 MPD C3 C4 sing N N 122 MPD C3 H31 sing N N 123 MPD C3 H32 sing N N 124 MPD C4 O4 sing N N 125 MPD C4 C5 sing N N 126 MPD C4 H4 sing N N 127 MPD O4 HO4 sing N N 128 MPD C5 H51 sing N N 129 MPD C5 H52 sing N N 130 MPD C5 H53 sing N N 131 VAL N CA sing N N 132 VAL N H sing N N 133 VAL N H2 sing N N 134 VAL CA C sing N N 135 VAL CA CB sing N N 136 VAL CA HA sing N N 137 VAL C O doub N N 138 VAL C OXT sing N N 139 VAL CB CG1 sing N N 140 VAL CB CG2 sing N N 141 VAL CB HB sing N N 142 VAL CG1 HG11 sing N N 143 VAL CG1 HG12 sing N N 144 VAL CG1 HG13 sing N N 145 VAL CG2 HG21 sing N N 146 VAL CG2 HG22 sing N N 147 VAL CG2 HG23 sing N N 148 VAL OXT HXT sing N N 149 # _atom_sites.entry_id 3SGR _atom_sites.fract_transf_matrix[1][1] 0.019106 _atom_sites.fract_transf_matrix[1][2] 0.011031 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022062 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011451 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_