data_3SI1 # _entry.id 3SI1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SI1 pdb_00003si1 10.2210/pdb3si1/pdb RCSB RCSB066227 ? ? WWPDB D_1000066227 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SI2 'Structure of glycosylated murine glutaminyl cyclase in presence of the inhibitor PQ50 (PDBD150)' unspecified PDB 3SI0 'Structure of glycosylated human glutaminyl cyclase' unspecified # _pdbx_database_status.entry_id 3SI1 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-06-17 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dambe, T.' 1 'Carrillo, D.' 2 'Parthier, C.' 3 'Stubbs, M.T.' 4 # _citation.id primary _citation.title 'Structures of Glycosylated Mammalian Glutaminyl Cyclases Reveal Conformational Variability near the Active Center.' _citation.journal_abbrev Biochemistry _citation.journal_volume 50 _citation.page_first 6280 _citation.page_last 6288 _citation.year 2011 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21671571 _citation.pdbx_database_id_DOI 10.1021/bi200249h # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ruiz-Carrillo, D.' 1 ? primary 'Koch, B.' 2 ? primary 'Parthier, C.' 3 ? primary 'Wermann, M.' 4 ? primary 'Dambe, T.' 5 ? primary 'Buchholz, M.' 6 ? primary 'Ludwig, H.H.' 7 ? primary 'Heiser, U.' 8 ? primary 'Rahfeld, J.U.' 9 ? primary 'Stubbs, M.T.' 10 ? primary 'Schilling, S.' 11 ? primary 'Demuth, H.U.' 12 ? # _cell.length_a 43.240 _cell.length_b 86.870 _cell.length_c 97.160 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3SI1 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3SI1 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glutaminyl-peptide cyclotransferase' 37606.543 1 2.3.2.5 ? 'UNP residues 36-362' ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 4 water nat water 18.015 52 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Glutaminyl cyclase, QC, Glutaminyl-tRNA cyclotransferase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AWTQEKNHHQPAHLNSSSLQQVAEGTSISEMWQNDLRPLLIERYPGSPGSYSARQHIMQRIQRLQAEWVVEVDTFLSRTP YGYRSFSNIISTLNPEAKRHLVLACHYDSKYFPRWDSRVFVGATDSAVPCAMMLELARALDKKLHSLKDVSGSKPDLSLR LIFFDGEEAFHHWSPQDSLYGSRHLAQKMASSPHPPGSRGTNQLDGMDLLVLLDLIGAANPTFPNFFPKTTRWFNRLQAI EKELYELGLLKDHSLERKYFQNFGYGNIIQDDHIPFLRKGVPVLHLIASPFPEVWHTMDDNEENLHASTIDNLNKIIQVF VLEYLHL ; _entity_poly.pdbx_seq_one_letter_code_can ;AWTQEKNHHQPAHLNSSSLQQVAEGTSISEMWQNDLRPLLIERYPGSPGSYSARQHIMQRIQRLQAEWVVEVDTFLSRTP YGYRSFSNIISTLNPEAKRHLVLACHYDSKYFPRWDSRVFVGATDSAVPCAMMLELARALDKKLHSLKDVSGSKPDLSLR LIFFDGEEAFHHWSPQDSLYGSRHLAQKMASSPHPPGSRGTNQLDGMDLLVLLDLIGAANPTFPNFFPKTTRWFNRLQAI EKELYELGLLKDHSLERKYFQNFGYGNIIQDDHIPFLRKGVPVLHLIASPFPEVWHTMDDNEENLHASTIDNLNKIIQVF VLEYLHL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 TRP n 1 3 THR n 1 4 GLN n 1 5 GLU n 1 6 LYS n 1 7 ASN n 1 8 HIS n 1 9 HIS n 1 10 GLN n 1 11 PRO n 1 12 ALA n 1 13 HIS n 1 14 LEU n 1 15 ASN n 1 16 SER n 1 17 SER n 1 18 SER n 1 19 LEU n 1 20 GLN n 1 21 GLN n 1 22 VAL n 1 23 ALA n 1 24 GLU n 1 25 GLY n 1 26 THR n 1 27 SER n 1 28 ILE n 1 29 SER n 1 30 GLU n 1 31 MET n 1 32 TRP n 1 33 GLN n 1 34 ASN n 1 35 ASP n 1 36 LEU n 1 37 ARG n 1 38 PRO n 1 39 LEU n 1 40 LEU n 1 41 ILE n 1 42 GLU n 1 43 ARG n 1 44 TYR n 1 45 PRO n 1 46 GLY n 1 47 SER n 1 48 PRO n 1 49 GLY n 1 50 SER n 1 51 TYR n 1 52 SER n 1 53 ALA n 1 54 ARG n 1 55 GLN n 1 56 HIS n 1 57 ILE n 1 58 MET n 1 59 GLN n 1 60 ARG n 1 61 ILE n 1 62 GLN n 1 63 ARG n 1 64 LEU n 1 65 GLN n 1 66 ALA n 1 67 GLU n 1 68 TRP n 1 69 VAL n 1 70 VAL n 1 71 GLU n 1 72 VAL n 1 73 ASP n 1 74 THR n 1 75 PHE n 1 76 LEU n 1 77 SER n 1 78 ARG n 1 79 THR n 1 80 PRO n 1 81 TYR n 1 82 GLY n 1 83 TYR n 1 84 ARG n 1 85 SER n 1 86 PHE n 1 87 SER n 1 88 ASN n 1 89 ILE n 1 90 ILE n 1 91 SER n 1 92 THR n 1 93 LEU n 1 94 ASN n 1 95 PRO n 1 96 GLU n 1 97 ALA n 1 98 LYS n 1 99 ARG n 1 100 HIS n 1 101 LEU n 1 102 VAL n 1 103 LEU n 1 104 ALA n 1 105 CYS n 1 106 HIS n 1 107 TYR n 1 108 ASP n 1 109 SER n 1 110 LYS n 1 111 TYR n 1 112 PHE n 1 113 PRO n 1 114 ARG n 1 115 TRP n 1 116 ASP n 1 117 SER n 1 118 ARG n 1 119 VAL n 1 120 PHE n 1 121 VAL n 1 122 GLY n 1 123 ALA n 1 124 THR n 1 125 ASP n 1 126 SER n 1 127 ALA n 1 128 VAL n 1 129 PRO n 1 130 CYS n 1 131 ALA n 1 132 MET n 1 133 MET n 1 134 LEU n 1 135 GLU n 1 136 LEU n 1 137 ALA n 1 138 ARG n 1 139 ALA n 1 140 LEU n 1 141 ASP n 1 142 LYS n 1 143 LYS n 1 144 LEU n 1 145 HIS n 1 146 SER n 1 147 LEU n 1 148 LYS n 1 149 ASP n 1 150 VAL n 1 151 SER n 1 152 GLY n 1 153 SER n 1 154 LYS n 1 155 PRO n 1 156 ASP n 1 157 LEU n 1 158 SER n 1 159 LEU n 1 160 ARG n 1 161 LEU n 1 162 ILE n 1 163 PHE n 1 164 PHE n 1 165 ASP n 1 166 GLY n 1 167 GLU n 1 168 GLU n 1 169 ALA n 1 170 PHE n 1 171 HIS n 1 172 HIS n 1 173 TRP n 1 174 SER n 1 175 PRO n 1 176 GLN n 1 177 ASP n 1 178 SER n 1 179 LEU n 1 180 TYR n 1 181 GLY n 1 182 SER n 1 183 ARG n 1 184 HIS n 1 185 LEU n 1 186 ALA n 1 187 GLN n 1 188 LYS n 1 189 MET n 1 190 ALA n 1 191 SER n 1 192 SER n 1 193 PRO n 1 194 HIS n 1 195 PRO n 1 196 PRO n 1 197 GLY n 1 198 SER n 1 199 ARG n 1 200 GLY n 1 201 THR n 1 202 ASN n 1 203 GLN n 1 204 LEU n 1 205 ASP n 1 206 GLY n 1 207 MET n 1 208 ASP n 1 209 LEU n 1 210 LEU n 1 211 VAL n 1 212 LEU n 1 213 LEU n 1 214 ASP n 1 215 LEU n 1 216 ILE n 1 217 GLY n 1 218 ALA n 1 219 ALA n 1 220 ASN n 1 221 PRO n 1 222 THR n 1 223 PHE n 1 224 PRO n 1 225 ASN n 1 226 PHE n 1 227 PHE n 1 228 PRO n 1 229 LYS n 1 230 THR n 1 231 THR n 1 232 ARG n 1 233 TRP n 1 234 PHE n 1 235 ASN n 1 236 ARG n 1 237 LEU n 1 238 GLN n 1 239 ALA n 1 240 ILE n 1 241 GLU n 1 242 LYS n 1 243 GLU n 1 244 LEU n 1 245 TYR n 1 246 GLU n 1 247 LEU n 1 248 GLY n 1 249 LEU n 1 250 LEU n 1 251 LYS n 1 252 ASP n 1 253 HIS n 1 254 SER n 1 255 LEU n 1 256 GLU n 1 257 ARG n 1 258 LYS n 1 259 TYR n 1 260 PHE n 1 261 GLN n 1 262 ASN n 1 263 PHE n 1 264 GLY n 1 265 TYR n 1 266 GLY n 1 267 ASN n 1 268 ILE n 1 269 ILE n 1 270 GLN n 1 271 ASP n 1 272 ASP n 1 273 HIS n 1 274 ILE n 1 275 PRO n 1 276 PHE n 1 277 LEU n 1 278 ARG n 1 279 LYS n 1 280 GLY n 1 281 VAL n 1 282 PRO n 1 283 VAL n 1 284 LEU n 1 285 HIS n 1 286 LEU n 1 287 ILE n 1 288 ALA n 1 289 SER n 1 290 PRO n 1 291 PHE n 1 292 PRO n 1 293 GLU n 1 294 VAL n 1 295 TRP n 1 296 HIS n 1 297 THR n 1 298 MET n 1 299 ASP n 1 300 ASP n 1 301 ASN n 1 302 GLU n 1 303 GLU n 1 304 ASN n 1 305 LEU n 1 306 HIS n 1 307 ALA n 1 308 SER n 1 309 THR n 1 310 ILE n 1 311 ASP n 1 312 ASN n 1 313 LEU n 1 314 ASN n 1 315 LYS n 1 316 ILE n 1 317 ILE n 1 318 GLN n 1 319 VAL n 1 320 PHE n 1 321 VAL n 1 322 LEU n 1 323 GLU n 1 324 TYR n 1 325 LEU n 1 326 HIS n 1 327 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Qpct _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain X33 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPICZalphaB _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code QPCT_MOUSE _struct_ref.pdbx_db_accession Q9CYK2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AWTQEKNHHQPAHLNSSSLQQVAEGTSISEMWQNDLRPLLIERYPGSPGSYSARQHIMQRIQRLQAEWVVEVDTFLSRTP YGYRSFSNIISTLNPEAKRHLVLACHYDSKYFPRWDSRVFVGATDSAVPCAMMLELARALDKKLHSLKDVSGSKPDLSLR LIFFDGEEAFHHWSPQDSLYGSRHLAQKMASSPHPPGSRGTNQLDGMDLLVLLDLIGAANPTFPNFFPKTTRWFNRLQAI EKELYELGLLKDHSLERKYFQNFGYGNIIQDDHIPFLRKGVPVLHLIASPFPEVWHTMDDNEENLHASTIDNLNKIIQVF VLEYLHL ; _struct_ref.pdbx_align_begin 36 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SI1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 327 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9CYK2 _struct_ref_seq.db_align_beg 36 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 362 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 36 _struct_ref_seq.pdbx_auth_seq_align_end 362 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 3SI1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 49.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.3 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '100 mM sodium acetate, 200 mM ammonium sulfate, 12% w/v PEG2000 MME, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2007-04-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator BL14.1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_wavelength 0.9184 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 # _reflns.entry_id 3SI1 _reflns.observed_criterion_sigma_F 3 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.9 _reflns.d_resolution_low 19.753 _reflns.number_all 8528 _reflns.number_obs 8528 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.111 _reflns.pdbx_netI_over_sigmaI 10.1 _reflns.B_iso_Wilson_estimate 56.2 _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_Rsym_value 0.508 _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3SI1 _refine.ls_d_res_high 2.90 _refine.ls_d_res_low 19.753 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.49 _refine.ls_number_reflns_obs 8527 _refine.ls_number_reflns_all 8528 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.2479 _refine.ls_R_factor_obs 0.2479 _refine.ls_R_factor_R_work 0.2451 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.3006 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 426 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 48.3409 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 2.9600 _refine.aniso_B[2][2] -2.9000 _refine.aniso_B[3][3] -0.0600 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.8890 _refine.correlation_coeff_Fo_to_Fc_free 0.8500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.5140 _refine.overall_SU_ML 0.3930 _refine.overall_SU_B ? _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 2AFM' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 87.850 _refine.B_iso_min 8.620 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2631 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 2712 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 19.753 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2738 0.019 0.021 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3723 2.163 1.957 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 321 11.331 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 136 43.480 23.603 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 446 25.714 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 18 18.093 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 401 0.135 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2109 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_nbd_refined 1747 0.335 0.200 ? ? 'X-RAY DIFFRACTION' r_nbtor_refined 1742 0.340 0.200 ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined 182 0.292 0.200 ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined 1 0.044 0.200 ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined 47 0.285 0.200 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1666 0.774 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 2617 1.373 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 1225 1.848 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 1106 2.729 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.900 _refine_ls_shell.d_res_low 2.975 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.34 _refine_ls_shell.number_reflns_R_work 568 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3500 _refine_ls_shell.R_factor_R_free 0.4840 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 602 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3SI1 _struct.title 'Structure of glycosylated murine glutaminyl cyclase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SI1 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;alpha/beta hydrolase, Alzheimer's disease, pyroglutamate, pGlu, pE, pGlu-amyloid, glycosylation, glycoprotein, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 1 ? HIS A 9 ? ALA A 36 HIS A 44 5 ? 9 HELX_P HELX_P2 2 ASN A 15 ? VAL A 22 ? ASN A 50 VAL A 57 1 ? 8 HELX_P HELX_P3 3 SER A 27 ? ASP A 35 ? SER A 62 ASP A 70 1 ? 9 HELX_P HELX_P4 4 LEU A 36 ? LEU A 40 ? LEU A 71 LEU A 75 5 ? 5 HELX_P HELX_P5 5 PRO A 48 ? ARG A 63 ? PRO A 83 ARG A 98 1 ? 16 HELX_P HELX_P6 6 SER A 126 ? ALA A 139 ? SER A 161 ALA A 174 1 ? 14 HELX_P HELX_P7 7 ASP A 141 ? SER A 146 ? ASP A 176 SER A 181 1 ? 6 HELX_P HELX_P8 8 TYR A 180 ? SER A 192 ? TYR A 215 SER A 227 1 ? 13 HELX_P HELX_P9 9 ASN A 202 ? GLY A 206 ? ASN A 237 GLY A 241 5 ? 5 HELX_P HELX_P10 10 PHE A 227 ? LYS A 229 ? PHE A 262 LYS A 264 5 ? 3 HELX_P HELX_P11 11 THR A 230 ? GLU A 241 ? THR A 265 GLU A 276 1 ? 12 HELX_P HELX_P12 12 PHE A 276 ? GLY A 280 ? PHE A 311 GLY A 315 5 ? 5 HELX_P HELX_P13 13 HIS A 306 ? LEU A 313 ? HIS A 341 LEU A 348 1 ? 8 HELX_P HELX_P14 14 LEU A 313 ? LEU A 325 ? LEU A 348 LEU A 360 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 105 SG ? ? ? 1_555 A CYS 130 SG ? ? A CYS 140 A CYS 165 1_555 ? ? ? ? ? ? ? 2.026 ? ? covale1 covale one ? A ASN 15 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 50 B NAG 1 1_555 ? ? ? ? ? ? ? 1.446 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.445 ? ? metalc1 metalc ? ? D HOH . O ? ? ? 1_555 C ZN . ZN ? ? A HOH 19 A ZN 601 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc2 metalc ? ? A ASP 125 OD2 ? ? ? 1_555 C ZN . ZN ? ? A ASP 160 A ZN 601 1_555 ? ? ? ? ? ? ? 1.976 ? ? metalc3 metalc ? ? A GLU 168 OE2 ? ? ? 1_555 C ZN . ZN ? ? A GLU 203 A ZN 601 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc4 metalc ? ? A HIS 296 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 331 A ZN 601 1_555 ? ? ? ? ? ? ? 2.536 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 125 A . ? ASP 160 A SER 126 A ? SER 161 A 1 -8.20 2 ASP 149 A . ? ASP 184 A VAL 150 A ? VAL 185 A 1 -9.14 3 HIS 194 A . ? HIS 229 A PRO 195 A ? PRO 230 A 1 2.76 4 PRO 196 A . ? PRO 231 A GLY 197 A ? GLY 232 A 1 -0.29 5 SER 289 A . ? SER 324 A PRO 290 A ? PRO 325 A 1 2.70 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 71 ? LEU A 76 ? GLU A 106 LEU A 111 A 2 SER A 85 ? ILE A 90 ? SER A 120 ILE A 125 B 1 SER A 158 ? PHE A 164 ? SER A 193 PHE A 199 B 2 HIS A 100 ? HIS A 106 ? HIS A 135 HIS A 141 B 3 VAL A 211 ? ASP A 214 ? VAL A 246 ASP A 249 B 4 LEU A 284 ? ILE A 287 ? LEU A 319 ILE A 322 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 75 ? N PHE A 110 O PHE A 86 ? O PHE A 121 B 1 2 O SER A 158 ? O SER A 193 N LEU A 101 ? N LEU A 136 B 2 3 N ALA A 104 ? N ALA A 139 O VAL A 211 ? O VAL A 246 B 3 4 N ASP A 214 ? N ASP A 249 O LEU A 286 ? O LEU A 321 # _atom_sites.entry_id 3SI1 _atom_sites.fract_transf_matrix[1][1] 0.023127 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011511 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010292 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 36 36 ALA ALA A . n A 1 2 TRP 2 37 37 TRP TRP A . n A 1 3 THR 3 38 38 THR THR A . n A 1 4 GLN 4 39 39 GLN GLN A . n A 1 5 GLU 5 40 40 GLU GLU A . n A 1 6 LYS 6 41 41 LYS LYS A . n A 1 7 ASN 7 42 42 ASN ASN A . n A 1 8 HIS 8 43 43 HIS HIS A . n A 1 9 HIS 9 44 44 HIS HIS A . n A 1 10 GLN 10 45 45 GLN GLN A . n A 1 11 PRO 11 46 46 PRO PRO A . n A 1 12 ALA 12 47 47 ALA ALA A . n A 1 13 HIS 13 48 48 HIS HIS A . n A 1 14 LEU 14 49 49 LEU LEU A . n A 1 15 ASN 15 50 50 ASN ASN A . n A 1 16 SER 16 51 51 SER SER A . n A 1 17 SER 17 52 52 SER SER A . n A 1 18 SER 18 53 53 SER SER A . n A 1 19 LEU 19 54 54 LEU LEU A . n A 1 20 GLN 20 55 55 GLN GLN A . n A 1 21 GLN 21 56 56 GLN GLN A . n A 1 22 VAL 22 57 57 VAL VAL A . n A 1 23 ALA 23 58 58 ALA ALA A . n A 1 24 GLU 24 59 59 GLU GLU A . n A 1 25 GLY 25 60 60 GLY GLY A . n A 1 26 THR 26 61 61 THR THR A . n A 1 27 SER 27 62 62 SER SER A . n A 1 28 ILE 28 63 63 ILE ILE A . n A 1 29 SER 29 64 64 SER SER A . n A 1 30 GLU 30 65 65 GLU GLU A . n A 1 31 MET 31 66 66 MET MET A . n A 1 32 TRP 32 67 67 TRP TRP A . n A 1 33 GLN 33 68 68 GLN GLN A . n A 1 34 ASN 34 69 69 ASN ASN A . n A 1 35 ASP 35 70 70 ASP ASP A . n A 1 36 LEU 36 71 71 LEU LEU A . n A 1 37 ARG 37 72 72 ARG ARG A . n A 1 38 PRO 38 73 73 PRO PRO A . n A 1 39 LEU 39 74 74 LEU LEU A . n A 1 40 LEU 40 75 75 LEU LEU A . n A 1 41 ILE 41 76 76 ILE ILE A . n A 1 42 GLU 42 77 77 GLU GLU A . n A 1 43 ARG 43 78 78 ARG ARG A . n A 1 44 TYR 44 79 79 TYR TYR A . n A 1 45 PRO 45 80 80 PRO PRO A . n A 1 46 GLY 46 81 81 GLY GLY A . n A 1 47 SER 47 82 82 SER SER A . n A 1 48 PRO 48 83 83 PRO PRO A . n A 1 49 GLY 49 84 84 GLY GLY A . n A 1 50 SER 50 85 85 SER SER A . n A 1 51 TYR 51 86 86 TYR TYR A . n A 1 52 SER 52 87 87 SER SER A . n A 1 53 ALA 53 88 88 ALA ALA A . n A 1 54 ARG 54 89 89 ARG ARG A . n A 1 55 GLN 55 90 90 GLN GLN A . n A 1 56 HIS 56 91 91 HIS HIS A . n A 1 57 ILE 57 92 92 ILE ILE A . n A 1 58 MET 58 93 93 MET MET A . n A 1 59 GLN 59 94 94 GLN GLN A . n A 1 60 ARG 60 95 95 ARG ARG A . n A 1 61 ILE 61 96 96 ILE ILE A . n A 1 62 GLN 62 97 97 GLN GLN A . n A 1 63 ARG 63 98 98 ARG ARG A . n A 1 64 LEU 64 99 99 LEU LEU A . n A 1 65 GLN 65 100 100 GLN GLN A . n A 1 66 ALA 66 101 101 ALA ALA A . n A 1 67 GLU 67 102 102 GLU GLU A . n A 1 68 TRP 68 103 103 TRP TRP A . n A 1 69 VAL 69 104 104 VAL VAL A . n A 1 70 VAL 70 105 105 VAL VAL A . n A 1 71 GLU 71 106 106 GLU GLU A . n A 1 72 VAL 72 107 107 VAL VAL A . n A 1 73 ASP 73 108 108 ASP ASP A . n A 1 74 THR 74 109 109 THR THR A . n A 1 75 PHE 75 110 110 PHE PHE A . n A 1 76 LEU 76 111 111 LEU LEU A . n A 1 77 SER 77 112 112 SER SER A . n A 1 78 ARG 78 113 113 ARG ARG A . n A 1 79 THR 79 114 114 THR THR A . n A 1 80 PRO 80 115 115 PRO PRO A . n A 1 81 TYR 81 116 116 TYR TYR A . n A 1 82 GLY 82 117 117 GLY GLY A . n A 1 83 TYR 83 118 118 TYR TYR A . n A 1 84 ARG 84 119 119 ARG ARG A . n A 1 85 SER 85 120 120 SER SER A . n A 1 86 PHE 86 121 121 PHE PHE A . n A 1 87 SER 87 122 122 SER SER A . n A 1 88 ASN 88 123 123 ASN ASN A . n A 1 89 ILE 89 124 124 ILE ILE A . n A 1 90 ILE 90 125 125 ILE ILE A . n A 1 91 SER 91 126 126 SER SER A . n A 1 92 THR 92 127 127 THR THR A . n A 1 93 LEU 93 128 128 LEU LEU A . n A 1 94 ASN 94 129 129 ASN ASN A . n A 1 95 PRO 95 130 130 PRO PRO A . n A 1 96 GLU 96 131 131 GLU GLU A . n A 1 97 ALA 97 132 132 ALA ALA A . n A 1 98 LYS 98 133 133 LYS LYS A . n A 1 99 ARG 99 134 134 ARG ARG A . n A 1 100 HIS 100 135 135 HIS HIS A . n A 1 101 LEU 101 136 136 LEU LEU A . n A 1 102 VAL 102 137 137 VAL VAL A . n A 1 103 LEU 103 138 138 LEU LEU A . n A 1 104 ALA 104 139 139 ALA ALA A . n A 1 105 CYS 105 140 140 CYS CYS A . n A 1 106 HIS 106 141 141 HIS HIS A . n A 1 107 TYR 107 142 142 TYR TYR A . n A 1 108 ASP 108 143 143 ASP ASP A . n A 1 109 SER 109 144 144 SER SER A . n A 1 110 LYS 110 145 145 LYS LYS A . n A 1 111 TYR 111 146 146 TYR TYR A . n A 1 112 PHE 112 147 147 PHE PHE A . n A 1 113 PRO 113 148 148 PRO PRO A . n A 1 114 ARG 114 149 149 ARG ARG A . n A 1 115 TRP 115 150 150 TRP TRP A . n A 1 116 ASP 116 151 151 ASP ASP A . n A 1 117 SER 117 152 152 SER SER A . n A 1 118 ARG 118 153 153 ARG ARG A . n A 1 119 VAL 119 154 154 VAL VAL A . n A 1 120 PHE 120 155 155 PHE PHE A . n A 1 121 VAL 121 156 156 VAL VAL A . n A 1 122 GLY 122 157 157 GLY GLY A . n A 1 123 ALA 123 158 158 ALA ALA A . n A 1 124 THR 124 159 159 THR THR A . n A 1 125 ASP 125 160 160 ASP ASP A . n A 1 126 SER 126 161 161 SER SER A . n A 1 127 ALA 127 162 162 ALA ALA A . n A 1 128 VAL 128 163 163 VAL VAL A . n A 1 129 PRO 129 164 164 PRO PRO A . n A 1 130 CYS 130 165 165 CYS CYS A . n A 1 131 ALA 131 166 166 ALA ALA A . n A 1 132 MET 132 167 167 MET MET A . n A 1 133 MET 133 168 168 MET MET A . n A 1 134 LEU 134 169 169 LEU LEU A . n A 1 135 GLU 135 170 170 GLU GLU A . n A 1 136 LEU 136 171 171 LEU LEU A . n A 1 137 ALA 137 172 172 ALA ALA A . n A 1 138 ARG 138 173 173 ARG ARG A . n A 1 139 ALA 139 174 174 ALA ALA A . n A 1 140 LEU 140 175 175 LEU LEU A . n A 1 141 ASP 141 176 176 ASP ASP A . n A 1 142 LYS 142 177 177 LYS LYS A . n A 1 143 LYS 143 178 178 LYS LYS A . n A 1 144 LEU 144 179 179 LEU LEU A . n A 1 145 HIS 145 180 180 HIS HIS A . n A 1 146 SER 146 181 181 SER SER A . n A 1 147 LEU 147 182 182 LEU LEU A . n A 1 148 LYS 148 183 183 LYS LYS A . n A 1 149 ASP 149 184 184 ASP ASP A . n A 1 150 VAL 150 185 185 VAL VAL A . n A 1 151 SER 151 186 ? ? ? A . n A 1 152 GLY 152 187 ? ? ? A . n A 1 153 SER 153 188 ? ? ? A . n A 1 154 LYS 154 189 ? ? ? A . n A 1 155 PRO 155 190 190 PRO PRO A . n A 1 156 ASP 156 191 191 ASP ASP A . n A 1 157 LEU 157 192 192 LEU LEU A . n A 1 158 SER 158 193 193 SER SER A . n A 1 159 LEU 159 194 194 LEU LEU A . n A 1 160 ARG 160 195 195 ARG ARG A . n A 1 161 LEU 161 196 196 LEU LEU A . n A 1 162 ILE 162 197 197 ILE ILE A . n A 1 163 PHE 163 198 198 PHE PHE A . n A 1 164 PHE 164 199 199 PHE PHE A . n A 1 165 ASP 165 200 200 ASP ASP A . n A 1 166 GLY 166 201 201 GLY GLY A . n A 1 167 GLU 167 202 202 GLU GLU A . n A 1 168 GLU 168 203 203 GLU GLU A . n A 1 169 ALA 169 204 204 ALA ALA A . n A 1 170 PHE 170 205 205 PHE PHE A . n A 1 171 HIS 171 206 206 HIS HIS A . n A 1 172 HIS 172 207 207 HIS HIS A . n A 1 173 TRP 173 208 208 TRP TRP A . n A 1 174 SER 174 209 209 SER SER A . n A 1 175 PRO 175 210 210 PRO PRO A . n A 1 176 GLN 176 211 211 GLN GLN A . n A 1 177 ASP 177 212 212 ASP ASP A . n A 1 178 SER 178 213 213 SER SER A . n A 1 179 LEU 179 214 214 LEU LEU A . n A 1 180 TYR 180 215 215 TYR TYR A . n A 1 181 GLY 181 216 216 GLY GLY A . n A 1 182 SER 182 217 217 SER SER A . n A 1 183 ARG 183 218 218 ARG ARG A . n A 1 184 HIS 184 219 219 HIS HIS A . n A 1 185 LEU 185 220 220 LEU LEU A . n A 1 186 ALA 186 221 221 ALA ALA A . n A 1 187 GLN 187 222 222 GLN GLN A . n A 1 188 LYS 188 223 223 LYS LYS A . n A 1 189 MET 189 224 224 MET MET A . n A 1 190 ALA 190 225 225 ALA ALA A . n A 1 191 SER 191 226 226 SER SER A . n A 1 192 SER 192 227 227 SER SER A . n A 1 193 PRO 193 228 228 PRO PRO A . n A 1 194 HIS 194 229 229 HIS HIS A . n A 1 195 PRO 195 230 230 PRO PRO A . n A 1 196 PRO 196 231 231 PRO PRO A . n A 1 197 GLY 197 232 232 GLY GLY A . n A 1 198 SER 198 233 233 SER SER A . n A 1 199 ARG 199 234 234 ARG ARG A . n A 1 200 GLY 200 235 235 GLY GLY A . n A 1 201 THR 201 236 236 THR THR A . n A 1 202 ASN 202 237 237 ASN ASN A . n A 1 203 GLN 203 238 238 GLN GLN A . n A 1 204 LEU 204 239 239 LEU LEU A . n A 1 205 ASP 205 240 240 ASP ASP A . n A 1 206 GLY 206 241 241 GLY GLY A . n A 1 207 MET 207 242 242 MET MET A . n A 1 208 ASP 208 243 243 ASP ASP A . n A 1 209 LEU 209 244 244 LEU LEU A . n A 1 210 LEU 210 245 245 LEU LEU A . n A 1 211 VAL 211 246 246 VAL VAL A . n A 1 212 LEU 212 247 247 LEU LEU A . n A 1 213 LEU 213 248 248 LEU LEU A . n A 1 214 ASP 214 249 249 ASP ASP A . n A 1 215 LEU 215 250 250 LEU LEU A . n A 1 216 ILE 216 251 251 ILE ILE A . n A 1 217 GLY 217 252 252 GLY GLY A . n A 1 218 ALA 218 253 253 ALA ALA A . n A 1 219 ALA 219 254 254 ALA ALA A . n A 1 220 ASN 220 255 255 ASN ASN A . n A 1 221 PRO 221 256 256 PRO PRO A . n A 1 222 THR 222 257 257 THR THR A . n A 1 223 PHE 223 258 258 PHE PHE A . n A 1 224 PRO 224 259 259 PRO PRO A . n A 1 225 ASN 225 260 260 ASN ASN A . n A 1 226 PHE 226 261 261 PHE PHE A . n A 1 227 PHE 227 262 262 PHE PHE A . n A 1 228 PRO 228 263 263 PRO PRO A . n A 1 229 LYS 229 264 264 LYS LYS A . n A 1 230 THR 230 265 265 THR THR A . n A 1 231 THR 231 266 266 THR THR A . n A 1 232 ARG 232 267 267 ARG ARG A . n A 1 233 TRP 233 268 268 TRP TRP A . n A 1 234 PHE 234 269 269 PHE PHE A . n A 1 235 ASN 235 270 270 ASN ASN A . n A 1 236 ARG 236 271 271 ARG ARG A . n A 1 237 LEU 237 272 272 LEU LEU A . n A 1 238 GLN 238 273 273 GLN GLN A . n A 1 239 ALA 239 274 274 ALA ALA A . n A 1 240 ILE 240 275 275 ILE ILE A . n A 1 241 GLU 241 276 276 GLU GLU A . n A 1 242 LYS 242 277 277 LYS LYS A . n A 1 243 GLU 243 278 278 GLU GLU A . n A 1 244 LEU 244 279 279 LEU LEU A . n A 1 245 TYR 245 280 280 TYR TYR A . n A 1 246 GLU 246 281 281 GLU GLU A . n A 1 247 LEU 247 282 282 LEU LEU A . n A 1 248 GLY 248 283 283 GLY GLY A . n A 1 249 LEU 249 284 284 LEU LEU A . n A 1 250 LEU 250 285 285 LEU LEU A . n A 1 251 LYS 251 286 286 LYS LYS A . n A 1 252 ASP 252 287 287 ASP ASP A . n A 1 253 HIS 253 288 288 HIS HIS A . n A 1 254 SER 254 289 289 SER SER A . n A 1 255 LEU 255 290 290 LEU LEU A . n A 1 256 GLU 256 291 291 GLU GLU A . n A 1 257 ARG 257 292 292 ARG ARG A . n A 1 258 LYS 258 293 293 LYS LYS A . n A 1 259 TYR 259 294 294 TYR TYR A . n A 1 260 PHE 260 295 295 PHE PHE A . n A 1 261 GLN 261 296 296 GLN GLN A . n A 1 262 ASN 262 297 297 ASN ASN A . n A 1 263 PHE 263 298 298 PHE PHE A . n A 1 264 GLY 264 299 299 GLY GLY A . n A 1 265 TYR 265 300 300 TYR TYR A . n A 1 266 GLY 266 301 301 GLY GLY A . n A 1 267 ASN 267 302 302 ASN ASN A . n A 1 268 ILE 268 303 303 ILE ILE A . n A 1 269 ILE 269 304 304 ILE ILE A . n A 1 270 GLN 270 305 305 GLN GLN A . n A 1 271 ASP 271 306 306 ASP ASP A . n A 1 272 ASP 272 307 307 ASP ASP A . n A 1 273 HIS 273 308 308 HIS HIS A . n A 1 274 ILE 274 309 309 ILE ILE A . n A 1 275 PRO 275 310 310 PRO PRO A . n A 1 276 PHE 276 311 311 PHE PHE A . n A 1 277 LEU 277 312 312 LEU LEU A . n A 1 278 ARG 278 313 313 ARG ARG A . n A 1 279 LYS 279 314 314 LYS LYS A . n A 1 280 GLY 280 315 315 GLY GLY A . n A 1 281 VAL 281 316 316 VAL VAL A . n A 1 282 PRO 282 317 317 PRO PRO A . n A 1 283 VAL 283 318 318 VAL VAL A . n A 1 284 LEU 284 319 319 LEU LEU A . n A 1 285 HIS 285 320 320 HIS HIS A . n A 1 286 LEU 286 321 321 LEU LEU A . n A 1 287 ILE 287 322 322 ILE ILE A . n A 1 288 ALA 288 323 323 ALA ALA A . n A 1 289 SER 289 324 324 SER SER A . n A 1 290 PRO 290 325 325 PRO PRO A . n A 1 291 PHE 291 326 326 PHE PHE A . n A 1 292 PRO 292 327 327 PRO PRO A . n A 1 293 GLU 293 328 328 GLU GLU A . n A 1 294 VAL 294 329 329 VAL VAL A . n A 1 295 TRP 295 330 330 TRP TRP A . n A 1 296 HIS 296 331 331 HIS HIS A . n A 1 297 THR 297 332 332 THR THR A . n A 1 298 MET 298 333 333 MET MET A . n A 1 299 ASP 299 334 334 ASP ASP A . n A 1 300 ASP 300 335 335 ASP ASP A . n A 1 301 ASN 301 336 336 ASN ASN A . n A 1 302 GLU 302 337 337 GLU GLU A . n A 1 303 GLU 303 338 338 GLU GLU A . n A 1 304 ASN 304 339 339 ASN ASN A . n A 1 305 LEU 305 340 340 LEU LEU A . n A 1 306 HIS 306 341 341 HIS HIS A . n A 1 307 ALA 307 342 342 ALA ALA A . n A 1 308 SER 308 343 343 SER SER A . n A 1 309 THR 309 344 344 THR THR A . n A 1 310 ILE 310 345 345 ILE ILE A . n A 1 311 ASP 311 346 346 ASP ASP A . n A 1 312 ASN 312 347 347 ASN ASN A . n A 1 313 LEU 313 348 348 LEU LEU A . n A 1 314 ASN 314 349 349 ASN ASN A . n A 1 315 LYS 315 350 350 LYS LYS A . n A 1 316 ILE 316 351 351 ILE ILE A . n A 1 317 ILE 317 352 352 ILE ILE A . n A 1 318 GLN 318 353 353 GLN GLN A . n A 1 319 VAL 319 354 354 VAL VAL A . n A 1 320 PHE 320 355 355 PHE PHE A . n A 1 321 VAL 321 356 356 VAL VAL A . n A 1 322 LEU 322 357 357 LEU LEU A . n A 1 323 GLU 323 358 358 GLU GLU A . n A 1 324 TYR 324 359 359 TYR TYR A . n A 1 325 LEU 325 360 360 LEU LEU A . n A 1 326 HIS 326 361 361 HIS HIS A . n A 1 327 LEU 327 362 362 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 601 601 ZN ZN A . D 4 HOH 1 1 1 HOH HOH A . D 4 HOH 2 2 2 HOH HOH A . D 4 HOH 3 3 3 HOH HOH A . D 4 HOH 4 4 4 HOH HOH A . D 4 HOH 5 5 5 HOH HOH A . D 4 HOH 6 6 6 HOH HOH A . D 4 HOH 7 7 7 HOH HOH A . D 4 HOH 8 8 8 HOH HOH A . D 4 HOH 9 9 9 HOH HOH A . D 4 HOH 10 10 10 HOH HOH A . D 4 HOH 11 11 11 HOH HOH A . D 4 HOH 12 12 12 HOH HOH A . D 4 HOH 13 13 13 HOH HOH A . D 4 HOH 14 14 14 HOH HOH A . D 4 HOH 15 15 15 HOH HOH A . D 4 HOH 16 16 16 HOH HOH A . D 4 HOH 17 17 17 HOH HOH A . D 4 HOH 18 18 18 HOH HOH A . D 4 HOH 19 19 19 HOH HOH A . D 4 HOH 20 20 20 HOH HOH A . D 4 HOH 21 21 21 HOH HOH A . D 4 HOH 22 22 22 HOH HOH A . D 4 HOH 23 23 23 HOH HOH A . D 4 HOH 24 24 24 HOH HOH A . D 4 HOH 25 25 25 HOH HOH A . D 4 HOH 26 26 26 HOH HOH A . D 4 HOH 27 27 27 HOH HOH A . D 4 HOH 28 28 28 HOH HOH A . D 4 HOH 29 29 29 HOH HOH A . D 4 HOH 30 30 30 HOH HOH A . D 4 HOH 31 31 31 HOH HOH A . D 4 HOH 32 32 32 HOH HOH A . D 4 HOH 33 33 33 HOH HOH A . D 4 HOH 34 34 34 HOH HOH A . D 4 HOH 35 35 35 HOH HOH A . D 4 HOH 36 363 36 HOH HOH A . D 4 HOH 37 364 37 HOH HOH A . D 4 HOH 38 365 38 HOH HOH A . D 4 HOH 39 366 39 HOH HOH A . D 4 HOH 40 367 40 HOH HOH A . D 4 HOH 41 368 41 HOH HOH A . D 4 HOH 42 369 42 HOH HOH A . D 4 HOH 43 370 43 HOH HOH A . D 4 HOH 44 371 44 HOH HOH A . D 4 HOH 45 372 45 HOH HOH A . D 4 HOH 46 373 46 HOH HOH A . D 4 HOH 47 374 47 HOH HOH A . D 4 HOH 48 375 48 HOH HOH A . D 4 HOH 49 376 49 HOH HOH A . D 4 HOH 50 377 50 HOH HOH A . D 4 HOH 51 378 51 HOH HOH A . D 4 HOH 52 379 52 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 15 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 50 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 19 ? 1_555 ZN ? C ZN . ? A ZN 601 ? 1_555 OD2 ? A ASP 125 ? A ASP 160 ? 1_555 82.9 ? 2 O ? D HOH . ? A HOH 19 ? 1_555 ZN ? C ZN . ? A ZN 601 ? 1_555 OE2 ? A GLU 168 ? A GLU 203 ? 1_555 119.0 ? 3 OD2 ? A ASP 125 ? A ASP 160 ? 1_555 ZN ? C ZN . ? A ZN 601 ? 1_555 OE2 ? A GLU 168 ? A GLU 203 ? 1_555 124.9 ? 4 O ? D HOH . ? A HOH 19 ? 1_555 ZN ? C ZN . ? A ZN 601 ? 1_555 NE2 ? A HIS 296 ? A HIS 331 ? 1_555 107.9 ? 5 OD2 ? A ASP 125 ? A ASP 160 ? 1_555 ZN ? C ZN . ? A ZN 601 ? 1_555 NE2 ? A HIS 296 ? A HIS 331 ? 1_555 116.2 ? 6 OE2 ? A GLU 168 ? A GLU 203 ? 1_555 ZN ? C ZN . ? A ZN 601 ? 1_555 NE2 ? A HIS 296 ? A HIS 331 ? 1_555 104.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-07-27 4 'Structure model' 1 3 2011-08-31 5 'Structure model' 1 4 2017-11-08 6 'Structure model' 2 0 2020-07-29 7 'Structure model' 2 1 2023-09-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Refinement description' 5 6 'Structure model' 'Atomic model' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Structure summary' 9 7 'Structure model' 'Data collection' 10 7 'Structure model' 'Database references' 11 7 'Structure model' 'Refinement description' 12 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' atom_site 3 6 'Structure model' chem_comp 4 6 'Structure model' entity 5 6 'Structure model' pdbx_branch_scheme 6 6 'Structure model' pdbx_chem_comp_identifier 7 6 'Structure model' pdbx_entity_branch 8 6 'Structure model' pdbx_entity_branch_descriptor 9 6 'Structure model' pdbx_entity_branch_link 10 6 'Structure model' pdbx_entity_branch_list 11 6 'Structure model' pdbx_entity_nonpoly 12 6 'Structure model' pdbx_nonpoly_scheme 13 6 'Structure model' pdbx_struct_assembly_gen 14 6 'Structure model' pdbx_struct_conn_angle 15 6 'Structure model' struct_asym 16 6 'Structure model' struct_conn 17 6 'Structure model' struct_site 18 6 'Structure model' struct_site_gen 19 7 'Structure model' chem_comp 20 7 'Structure model' chem_comp_atom 21 7 'Structure model' chem_comp_bond 22 7 'Structure model' database_2 23 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.name' 2 6 'Structure model' '_atom_site.B_iso_or_equiv' 3 6 'Structure model' '_atom_site.Cartn_x' 4 6 'Structure model' '_atom_site.Cartn_y' 5 6 'Structure model' '_atom_site.Cartn_z' 6 6 'Structure model' '_atom_site.auth_asym_id' 7 6 'Structure model' '_atom_site.auth_atom_id' 8 6 'Structure model' '_atom_site.auth_comp_id' 9 6 'Structure model' '_atom_site.auth_seq_id' 10 6 'Structure model' '_atom_site.label_asym_id' 11 6 'Structure model' '_atom_site.label_atom_id' 12 6 'Structure model' '_atom_site.label_comp_id' 13 6 'Structure model' '_atom_site.label_entity_id' 14 6 'Structure model' '_atom_site.type_symbol' 15 6 'Structure model' '_chem_comp.name' 16 6 'Structure model' '_chem_comp.type' 17 6 'Structure model' '_entity.formula_weight' 18 6 'Structure model' '_entity.pdbx_description' 19 6 'Structure model' '_entity.pdbx_number_of_molecules' 20 6 'Structure model' '_entity.src_method' 21 6 'Structure model' '_entity.type' 22 6 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 23 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 24 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 25 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 26 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 27 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 28 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 29 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 30 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 31 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 32 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 33 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 34 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 35 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 36 6 'Structure model' '_pdbx_struct_conn_angle.value' 37 6 'Structure model' '_struct_conn.pdbx_dist_value' 38 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 39 6 'Structure model' '_struct_conn.pdbx_role' 40 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 41 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 42 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 43 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 44 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 45 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 46 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 47 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 48 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 49 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 50 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 51 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 52 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 53 7 'Structure model' '_chem_comp.pdbx_synonyms' 54 7 'Structure model' '_database_2.pdbx_DOI' 55 7 'Structure model' '_database_2.pdbx_database_accession' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 2 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ASP 346 ? ? N A ASN 349 ? ? 1.83 2 1 NH1 A ARG 78 ? ? O A VAL 156 ? ? 1.98 3 1 OE1 A GLU 276 ? ? O A HOH 377 ? ? 2.05 4 1 O A THR 159 ? ? OG A SER 161 ? ? 2.10 5 1 O A TRP 37 ? ? N A GLN 39 ? ? 2.12 6 1 O A TRP 268 ? ? N A ARG 271 ? ? 2.15 7 1 O A ILE 92 ? ? N A ARG 95 ? ? 2.16 8 1 O A LEU 360 ? ? N A LEU 362 ? ? 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LEU 171 ? ? CG A LEU 171 ? ? CD1 A LEU 171 ? ? 100.32 111.00 -10.68 1.70 N 2 1 CB A LEU 171 ? ? CG A LEU 171 ? ? CD2 A LEU 171 ? ? 99.35 111.00 -11.65 1.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 37 ? ? -42.53 -75.22 2 1 THR A 38 ? ? -3.35 -24.61 3 1 LYS A 41 ? ? -36.01 -39.16 4 1 ASN A 42 ? ? -93.37 32.94 5 1 THR A 61 ? ? 179.27 135.61 6 1 ILE A 63 ? ? -64.64 0.20 7 1 LEU A 71 ? ? -90.76 -63.19 8 1 PRO A 73 ? ? -70.82 27.66 9 1 PRO A 83 ? ? -19.86 -41.47 10 1 SER A 85 ? ? -56.98 22.16 11 1 TYR A 86 ? ? -135.35 -46.85 12 1 ALA A 88 ? ? -76.61 -91.24 13 1 ARG A 89 ? ? -18.37 -67.68 14 1 ILE A 92 ? ? -54.17 -83.71 15 1 MET A 93 ? ? -9.97 -79.45 16 1 ILE A 96 ? ? -68.92 -94.13 17 1 GLN A 97 ? ? -32.82 -36.22 18 1 ALA A 101 ? ? -72.18 -149.26 19 1 PRO A 115 ? ? -55.01 14.33 20 1 TYR A 118 ? ? -115.87 70.38 21 1 ASN A 129 ? ? 46.16 77.14 22 1 ALA A 132 ? ? -41.34 150.03 23 1 LYS A 133 ? ? -141.70 40.27 24 1 ALA A 139 ? ? -167.20 103.75 25 1 VAL A 156 ? ? -149.24 -46.54 26 1 ALA A 158 ? ? -75.43 -74.28 27 1 ASP A 160 ? ? -117.99 77.63 28 1 SER A 161 ? ? -164.25 84.61 29 1 PRO A 164 ? ? -46.61 -84.58 30 1 CYS A 165 ? ? -28.37 -48.11 31 1 MET A 168 ? ? -28.42 -32.01 32 1 ARG A 173 ? ? -71.60 -83.47 33 1 ALA A 174 ? ? -29.36 -61.50 34 1 ASP A 176 ? ? -73.33 -74.48 35 1 LEU A 182 ? ? 177.63 2.72 36 1 ASP A 191 ? ? -35.52 121.00 37 1 LEU A 192 ? ? 164.69 114.32 38 1 SER A 193 ? ? -158.88 -130.08 39 1 PHE A 205 ? ? -61.13 -77.92 40 1 PRO A 210 ? ? -36.14 -25.66 41 1 ASP A 212 ? ? -105.18 67.89 42 1 SER A 213 ? ? 171.26 149.74 43 1 LEU A 214 ? ? 79.64 -20.34 44 1 TYR A 215 ? ? 11.10 -81.80 45 1 SER A 217 ? ? -21.09 -73.45 46 1 ALA A 221 ? ? -49.24 -73.15 47 1 ASN A 255 ? ? 68.89 66.79 48 1 PRO A 259 ? ? -51.74 -161.98 49 1 LYS A 264 ? ? -24.05 -49.51 50 1 ASN A 270 ? ? -39.87 -30.04 51 1 LYS A 277 ? ? -122.44 -52.73 52 1 GLU A 278 ? ? -49.39 8.77 53 1 LEU A 279 ? ? -132.94 -55.89 54 1 LEU A 284 ? ? -70.29 26.43 55 1 PHE A 298 ? ? -159.81 -21.47 56 1 ASP A 306 ? ? -101.77 -166.22 57 1 PHE A 311 ? ? -91.77 -77.09 58 1 LEU A 312 ? ? -16.38 -25.25 59 1 ILE A 322 ? ? -176.19 83.56 60 1 ALA A 323 ? ? -22.56 113.12 61 1 PHE A 326 ? ? -36.68 144.56 62 1 GLU A 328 ? ? -71.86 23.04 63 1 HIS A 331 ? ? 75.48 -21.99 64 1 ASP A 334 ? ? -65.81 8.12 65 1 ASN A 336 ? ? -126.29 -161.23 66 1 GLU A 337 ? ? -67.07 -82.02 67 1 GLU A 338 ? ? 15.96 -87.82 68 1 LEU A 340 ? ? -124.82 -157.57 69 1 HIS A 341 ? ? 175.42 88.17 70 1 ALA A 342 ? ? -26.68 -88.58 71 1 SER A 343 ? ? 0.41 -94.97 72 1 THR A 344 ? ? -28.61 -94.49 73 1 ILE A 345 ? ? -9.30 -77.15 74 1 ASP A 346 ? ? -24.41 -98.53 75 1 ASN A 347 ? ? -24.82 -52.02 76 1 LYS A 350 ? ? -54.64 -107.34 77 1 ILE A 351 ? ? 38.42 -79.97 78 1 PHE A 355 ? ? -39.94 -71.62 79 1 VAL A 356 ? ? -27.18 -48.64 80 1 LEU A 357 ? ? -59.71 -105.50 81 1 GLU A 358 ? ? 15.40 -90.84 82 1 TYR A 359 ? ? -13.17 -85.17 83 1 LEU A 360 ? ? -69.65 94.87 84 1 HIS A 361 ? ? -31.08 42.94 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ALA A 101 ? ? GLU A 102 ? ? -147.92 2 1 ARG A 313 ? ? LYS A 314 ? ? 149.15 3 1 LEU A 321 ? ? ILE A 322 ? ? -135.24 4 1 HIS A 361 ? ? LEU A 362 ? ? 145.08 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 186 ? A SER 151 2 1 Y 1 A GLY 187 ? A GLY 152 3 1 Y 1 A SER 188 ? A SER 153 4 1 Y 1 A LYS 189 ? A LYS 154 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 NAG C1 C N R 250 NAG C2 C N R 251 NAG C3 C N R 252 NAG C4 C N S 253 NAG C5 C N R 254 NAG C6 C N N 255 NAG C7 C N N 256 NAG C8 C N N 257 NAG N2 N N N 258 NAG O1 O N N 259 NAG O3 O N N 260 NAG O4 O N N 261 NAG O5 O N N 262 NAG O6 O N N 263 NAG O7 O N N 264 NAG H1 H N N 265 NAG H2 H N N 266 NAG H3 H N N 267 NAG H4 H N N 268 NAG H5 H N N 269 NAG H61 H N N 270 NAG H62 H N N 271 NAG H81 H N N 272 NAG H82 H N N 273 NAG H83 H N N 274 NAG HN2 H N N 275 NAG HO1 H N N 276 NAG HO3 H N N 277 NAG HO4 H N N 278 NAG HO6 H N N 279 PHE N N N N 280 PHE CA C N S 281 PHE C C N N 282 PHE O O N N 283 PHE CB C N N 284 PHE CG C Y N 285 PHE CD1 C Y N 286 PHE CD2 C Y N 287 PHE CE1 C Y N 288 PHE CE2 C Y N 289 PHE CZ C Y N 290 PHE OXT O N N 291 PHE H H N N 292 PHE H2 H N N 293 PHE HA H N N 294 PHE HB2 H N N 295 PHE HB3 H N N 296 PHE HD1 H N N 297 PHE HD2 H N N 298 PHE HE1 H N N 299 PHE HE2 H N N 300 PHE HZ H N N 301 PHE HXT H N N 302 PRO N N N N 303 PRO CA C N S 304 PRO C C N N 305 PRO O O N N 306 PRO CB C N N 307 PRO CG C N N 308 PRO CD C N N 309 PRO OXT O N N 310 PRO H H N N 311 PRO HA H N N 312 PRO HB2 H N N 313 PRO HB3 H N N 314 PRO HG2 H N N 315 PRO HG3 H N N 316 PRO HD2 H N N 317 PRO HD3 H N N 318 PRO HXT H N N 319 SER N N N N 320 SER CA C N S 321 SER C C N N 322 SER O O N N 323 SER CB C N N 324 SER OG O N N 325 SER OXT O N N 326 SER H H N N 327 SER H2 H N N 328 SER HA H N N 329 SER HB2 H N N 330 SER HB3 H N N 331 SER HG H N N 332 SER HXT H N N 333 THR N N N N 334 THR CA C N S 335 THR C C N N 336 THR O O N N 337 THR CB C N R 338 THR OG1 O N N 339 THR CG2 C N N 340 THR OXT O N N 341 THR H H N N 342 THR H2 H N N 343 THR HA H N N 344 THR HB H N N 345 THR HG1 H N N 346 THR HG21 H N N 347 THR HG22 H N N 348 THR HG23 H N N 349 THR HXT H N N 350 TRP N N N N 351 TRP CA C N S 352 TRP C C N N 353 TRP O O N N 354 TRP CB C N N 355 TRP CG C Y N 356 TRP CD1 C Y N 357 TRP CD2 C Y N 358 TRP NE1 N Y N 359 TRP CE2 C Y N 360 TRP CE3 C Y N 361 TRP CZ2 C Y N 362 TRP CZ3 C Y N 363 TRP CH2 C Y N 364 TRP OXT O N N 365 TRP H H N N 366 TRP H2 H N N 367 TRP HA H N N 368 TRP HB2 H N N 369 TRP HB3 H N N 370 TRP HD1 H N N 371 TRP HE1 H N N 372 TRP HE3 H N N 373 TRP HZ2 H N N 374 TRP HZ3 H N N 375 TRP HH2 H N N 376 TRP HXT H N N 377 TYR N N N N 378 TYR CA C N S 379 TYR C C N N 380 TYR O O N N 381 TYR CB C N N 382 TYR CG C Y N 383 TYR CD1 C Y N 384 TYR CD2 C Y N 385 TYR CE1 C Y N 386 TYR CE2 C Y N 387 TYR CZ C Y N 388 TYR OH O N N 389 TYR OXT O N N 390 TYR H H N N 391 TYR H2 H N N 392 TYR HA H N N 393 TYR HB2 H N N 394 TYR HB3 H N N 395 TYR HD1 H N N 396 TYR HD2 H N N 397 TYR HE1 H N N 398 TYR HE2 H N N 399 TYR HH H N N 400 TYR HXT H N N 401 VAL N N N N 402 VAL CA C N S 403 VAL C C N N 404 VAL O O N N 405 VAL CB C N N 406 VAL CG1 C N N 407 VAL CG2 C N N 408 VAL OXT O N N 409 VAL H H N N 410 VAL H2 H N N 411 VAL HA H N N 412 VAL HB H N N 413 VAL HG11 H N N 414 VAL HG12 H N N 415 VAL HG13 H N N 416 VAL HG21 H N N 417 VAL HG22 H N N 418 VAL HG23 H N N 419 VAL HXT H N N 420 ZN ZN ZN N N 421 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 NAG C1 C2 sing N N 237 NAG C1 O1 sing N N 238 NAG C1 O5 sing N N 239 NAG C1 H1 sing N N 240 NAG C2 C3 sing N N 241 NAG C2 N2 sing N N 242 NAG C2 H2 sing N N 243 NAG C3 C4 sing N N 244 NAG C3 O3 sing N N 245 NAG C3 H3 sing N N 246 NAG C4 C5 sing N N 247 NAG C4 O4 sing N N 248 NAG C4 H4 sing N N 249 NAG C5 C6 sing N N 250 NAG C5 O5 sing N N 251 NAG C5 H5 sing N N 252 NAG C6 O6 sing N N 253 NAG C6 H61 sing N N 254 NAG C6 H62 sing N N 255 NAG C7 C8 sing N N 256 NAG C7 N2 sing N N 257 NAG C7 O7 doub N N 258 NAG C8 H81 sing N N 259 NAG C8 H82 sing N N 260 NAG C8 H83 sing N N 261 NAG N2 HN2 sing N N 262 NAG O1 HO1 sing N N 263 NAG O3 HO3 sing N N 264 NAG O4 HO4 sing N N 265 NAG O6 HO6 sing N N 266 PHE N CA sing N N 267 PHE N H sing N N 268 PHE N H2 sing N N 269 PHE CA C sing N N 270 PHE CA CB sing N N 271 PHE CA HA sing N N 272 PHE C O doub N N 273 PHE C OXT sing N N 274 PHE CB CG sing N N 275 PHE CB HB2 sing N N 276 PHE CB HB3 sing N N 277 PHE CG CD1 doub Y N 278 PHE CG CD2 sing Y N 279 PHE CD1 CE1 sing Y N 280 PHE CD1 HD1 sing N N 281 PHE CD2 CE2 doub Y N 282 PHE CD2 HD2 sing N N 283 PHE CE1 CZ doub Y N 284 PHE CE1 HE1 sing N N 285 PHE CE2 CZ sing Y N 286 PHE CE2 HE2 sing N N 287 PHE CZ HZ sing N N 288 PHE OXT HXT sing N N 289 PRO N CA sing N N 290 PRO N CD sing N N 291 PRO N H sing N N 292 PRO CA C sing N N 293 PRO CA CB sing N N 294 PRO CA HA sing N N 295 PRO C O doub N N 296 PRO C OXT sing N N 297 PRO CB CG sing N N 298 PRO CB HB2 sing N N 299 PRO CB HB3 sing N N 300 PRO CG CD sing N N 301 PRO CG HG2 sing N N 302 PRO CG HG3 sing N N 303 PRO CD HD2 sing N N 304 PRO CD HD3 sing N N 305 PRO OXT HXT sing N N 306 SER N CA sing N N 307 SER N H sing N N 308 SER N H2 sing N N 309 SER CA C sing N N 310 SER CA CB sing N N 311 SER CA HA sing N N 312 SER C O doub N N 313 SER C OXT sing N N 314 SER CB OG sing N N 315 SER CB HB2 sing N N 316 SER CB HB3 sing N N 317 SER OG HG sing N N 318 SER OXT HXT sing N N 319 THR N CA sing N N 320 THR N H sing N N 321 THR N H2 sing N N 322 THR CA C sing N N 323 THR CA CB sing N N 324 THR CA HA sing N N 325 THR C O doub N N 326 THR C OXT sing N N 327 THR CB OG1 sing N N 328 THR CB CG2 sing N N 329 THR CB HB sing N N 330 THR OG1 HG1 sing N N 331 THR CG2 HG21 sing N N 332 THR CG2 HG22 sing N N 333 THR CG2 HG23 sing N N 334 THR OXT HXT sing N N 335 TRP N CA sing N N 336 TRP N H sing N N 337 TRP N H2 sing N N 338 TRP CA C sing N N 339 TRP CA CB sing N N 340 TRP CA HA sing N N 341 TRP C O doub N N 342 TRP C OXT sing N N 343 TRP CB CG sing N N 344 TRP CB HB2 sing N N 345 TRP CB HB3 sing N N 346 TRP CG CD1 doub Y N 347 TRP CG CD2 sing Y N 348 TRP CD1 NE1 sing Y N 349 TRP CD1 HD1 sing N N 350 TRP CD2 CE2 doub Y N 351 TRP CD2 CE3 sing Y N 352 TRP NE1 CE2 sing Y N 353 TRP NE1 HE1 sing N N 354 TRP CE2 CZ2 sing Y N 355 TRP CE3 CZ3 doub Y N 356 TRP CE3 HE3 sing N N 357 TRP CZ2 CH2 doub Y N 358 TRP CZ2 HZ2 sing N N 359 TRP CZ3 CH2 sing Y N 360 TRP CZ3 HZ3 sing N N 361 TRP CH2 HH2 sing N N 362 TRP OXT HXT sing N N 363 TYR N CA sing N N 364 TYR N H sing N N 365 TYR N H2 sing N N 366 TYR CA C sing N N 367 TYR CA CB sing N N 368 TYR CA HA sing N N 369 TYR C O doub N N 370 TYR C OXT sing N N 371 TYR CB CG sing N N 372 TYR CB HB2 sing N N 373 TYR CB HB3 sing N N 374 TYR CG CD1 doub Y N 375 TYR CG CD2 sing Y N 376 TYR CD1 CE1 sing Y N 377 TYR CD1 HD1 sing N N 378 TYR CD2 CE2 doub Y N 379 TYR CD2 HD2 sing N N 380 TYR CE1 CZ doub Y N 381 TYR CE1 HE1 sing N N 382 TYR CE2 CZ sing Y N 383 TYR CE2 HE2 sing N N 384 TYR CZ OH sing N N 385 TYR OH HH sing N N 386 TYR OXT HXT sing N N 387 VAL N CA sing N N 388 VAL N H sing N N 389 VAL N H2 sing N N 390 VAL CA C sing N N 391 VAL CA CB sing N N 392 VAL CA HA sing N N 393 VAL C O doub N N 394 VAL C OXT sing N N 395 VAL CB CG1 sing N N 396 VAL CB CG2 sing N N 397 VAL CB HB sing N N 398 VAL CG1 HG11 sing N N 399 VAL CG1 HG12 sing N N 400 VAL CG1 HG13 sing N N 401 VAL CG2 HG21 sing N N 402 VAL CG2 HG22 sing N N 403 VAL CG2 HG23 sing N N 404 VAL OXT HXT sing N N 405 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 D NAG 701 n B 2 NAG 2 B NAG 2 D NAG 702 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2AFM _pdbx_initial_refinement_model.details 'PDB ENTRY 2AFM' #