HEADER TRANSFERASE 17-JUN-11 3SI1 TITLE STRUCTURE OF GLYCOSYLATED MURINE GLUTAMINYL CYCLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 36-362; COMPND 5 SYNONYM: GLUTAMINYL CYCLASE, QC, GLUTAMINYL-TRNA CYCLOTRANSFERASE; COMPND 6 EC: 2.3.2.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: QPCT; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAB KEYWDS ALPHA/BETA HYDROLASE, ALZHEIMER'S DISEASE, PYROGLUTAMATE, PGLU, PE, KEYWDS 2 PGLU-AMYLOID, GLYCOSYLATION, GLYCOPROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.DAMBE,D.CARRILLO,C.PARTHIER,M.T.STUBBS REVDAT 8 16-OCT-24 3SI1 1 REMARK REVDAT 7 13-SEP-23 3SI1 1 HETSYN REVDAT 6 29-JUL-20 3SI1 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 08-NOV-17 3SI1 1 REMARK REVDAT 4 31-AUG-11 3SI1 1 AUTHOR REVDAT 3 27-JUL-11 3SI1 1 JRNL REVDAT 2 06-JUL-11 3SI1 1 JRNL REVDAT 1 29-JUN-11 3SI1 0 JRNL AUTH D.RUIZ-CARRILLO,B.KOCH,C.PARTHIER,M.WERMANN,T.DAMBE, JRNL AUTH 2 M.BUCHHOLZ,H.H.LUDWIG,U.HEISER,J.U.RAHFELD,M.T.STUBBS, JRNL AUTH 3 S.SCHILLING,H.U.DEMUTH JRNL TITL STRUCTURES OF GLYCOSYLATED MAMMALIAN GLUTAMINYL CYCLASES JRNL TITL 2 REVEAL CONFORMATIONAL VARIABILITY NEAR THE ACTIVE CENTER. JRNL REF BIOCHEMISTRY V. 50 6280 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21671571 JRNL DOI 10.1021/BI200249H REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 8527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 426 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.4840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2631 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.96000 REMARK 3 B22 (A**2) : -2.90000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.514 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.393 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.889 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.850 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2738 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3723 ; 2.163 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ;11.331 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;43.480 ;23.603 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;25.714 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.093 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2109 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1747 ; 0.335 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1742 ; 0.340 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 182 ; 0.292 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.044 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.285 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1666 ; 0.774 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2617 ; 1.373 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1225 ; 1.848 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1106 ; 2.729 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : BL14.1 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8528 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.753 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50800 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2AFM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, 200 MM AMMONIUM REMARK 280 SULFATE, 12% W/V PEG2000 MME, PH 5.3, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.62000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.58000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.58000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.62000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 186 REMARK 465 GLY A 187 REMARK 465 SER A 188 REMARK 465 LYS A 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 346 N ASN A 349 1.83 REMARK 500 NH1 ARG A 78 O VAL A 156 1.98 REMARK 500 OE1 GLU A 276 O HOH A 377 2.05 REMARK 500 O THR A 159 OG SER A 161 2.10 REMARK 500 O TRP A 37 N GLN A 39 2.12 REMARK 500 O TRP A 268 N ARG A 271 2.15 REMARK 500 O ILE A 92 N ARG A 95 2.16 REMARK 500 O LEU A 360 N LEU A 362 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 171 CB - CG - CD1 ANGL. DEV. = -10.7 DEGREES REMARK 500 LEU A 171 CB - CG - CD2 ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 37 -75.22 -42.53 REMARK 500 THR A 38 -24.61 -3.35 REMARK 500 LYS A 41 -39.16 -36.01 REMARK 500 ASN A 42 32.94 -93.37 REMARK 500 THR A 61 135.61 179.27 REMARK 500 ILE A 63 0.20 -64.64 REMARK 500 LEU A 71 -63.19 -90.76 REMARK 500 PRO A 73 27.66 -70.82 REMARK 500 PRO A 83 -41.47 -19.86 REMARK 500 SER A 85 22.16 -56.98 REMARK 500 TYR A 86 -46.85 -135.35 REMARK 500 ALA A 88 -91.24 -76.61 REMARK 500 ARG A 89 -67.68 -18.37 REMARK 500 ILE A 92 -83.71 -54.17 REMARK 500 MET A 93 -79.45 -9.97 REMARK 500 ILE A 96 -94.13 -68.92 REMARK 500 GLN A 97 -36.22 -32.82 REMARK 500 ALA A 101 -149.26 -72.18 REMARK 500 PRO A 115 14.33 -55.01 REMARK 500 TYR A 118 70.38 -115.87 REMARK 500 ASN A 129 77.14 46.16 REMARK 500 ALA A 132 150.03 -41.34 REMARK 500 LYS A 133 40.27 -141.70 REMARK 500 ALA A 139 103.75 -167.20 REMARK 500 VAL A 156 -46.54 -149.24 REMARK 500 ALA A 158 -74.28 -75.43 REMARK 500 ASP A 160 77.63 -117.99 REMARK 500 SER A 161 84.61 -164.25 REMARK 500 PRO A 164 -84.58 -46.61 REMARK 500 CYS A 165 -48.11 -28.37 REMARK 500 MET A 168 -32.01 -28.42 REMARK 500 ARG A 173 -83.47 -71.60 REMARK 500 ALA A 174 -61.50 -29.36 REMARK 500 ASP A 176 -74.48 -73.33 REMARK 500 LEU A 182 2.72 177.63 REMARK 500 ASP A 191 121.00 -35.52 REMARK 500 LEU A 192 114.32 164.69 REMARK 500 SER A 193 -130.08 -158.88 REMARK 500 PHE A 205 -77.92 -61.13 REMARK 500 PRO A 210 -25.66 -36.14 REMARK 500 ASP A 212 67.89 -105.18 REMARK 500 SER A 213 149.74 171.26 REMARK 500 LEU A 214 -20.34 79.64 REMARK 500 TYR A 215 -81.80 11.10 REMARK 500 SER A 217 -73.45 -21.09 REMARK 500 ALA A 221 -73.15 -49.24 REMARK 500 ASN A 255 66.79 68.89 REMARK 500 PRO A 259 -161.98 -51.74 REMARK 500 LYS A 264 -49.51 -24.05 REMARK 500 ASN A 270 -30.04 -39.87 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 101 GLU A 102 -147.92 REMARK 500 ARG A 313 LYS A 314 149.15 REMARK 500 LEU A 321 ILE A 322 -135.24 REMARK 500 HIS A 361 LEU A 362 145.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 19 O REMARK 620 2 ASP A 160 OD2 82.9 REMARK 620 3 GLU A 203 OE2 119.0 124.9 REMARK 620 4 HIS A 331 NE2 107.9 116.2 104.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SI2 RELATED DB: PDB REMARK 900 STRUCTURE OF GLYCOSYLATED MURINE GLUTAMINYL CYCLASE IN PRESENCE OF REMARK 900 THE INHIBITOR PQ50 (PDBD150) REMARK 900 RELATED ID: 3SI0 RELATED DB: PDB REMARK 900 STRUCTURE OF GLYCOSYLATED HUMAN GLUTAMINYL CYCLASE DBREF 3SI1 A 36 362 UNP Q9CYK2 QPCT_MOUSE 36 362 SEQRES 1 A 327 ALA TRP THR GLN GLU LYS ASN HIS HIS GLN PRO ALA HIS SEQRES 2 A 327 LEU ASN SER SER SER LEU GLN GLN VAL ALA GLU GLY THR SEQRES 3 A 327 SER ILE SER GLU MET TRP GLN ASN ASP LEU ARG PRO LEU SEQRES 4 A 327 LEU ILE GLU ARG TYR PRO GLY SER PRO GLY SER TYR SER SEQRES 5 A 327 ALA ARG GLN HIS ILE MET GLN ARG ILE GLN ARG LEU GLN SEQRES 6 A 327 ALA GLU TRP VAL VAL GLU VAL ASP THR PHE LEU SER ARG SEQRES 7 A 327 THR PRO TYR GLY TYR ARG SER PHE SER ASN ILE ILE SER SEQRES 8 A 327 THR LEU ASN PRO GLU ALA LYS ARG HIS LEU VAL LEU ALA SEQRES 9 A 327 CYS HIS TYR ASP SER LYS TYR PHE PRO ARG TRP ASP SER SEQRES 10 A 327 ARG VAL PHE VAL GLY ALA THR ASP SER ALA VAL PRO CYS SEQRES 11 A 327 ALA MET MET LEU GLU LEU ALA ARG ALA LEU ASP LYS LYS SEQRES 12 A 327 LEU HIS SER LEU LYS ASP VAL SER GLY SER LYS PRO ASP SEQRES 13 A 327 LEU SER LEU ARG LEU ILE PHE PHE ASP GLY GLU GLU ALA SEQRES 14 A 327 PHE HIS HIS TRP SER PRO GLN ASP SER LEU TYR GLY SER SEQRES 15 A 327 ARG HIS LEU ALA GLN LYS MET ALA SER SER PRO HIS PRO SEQRES 16 A 327 PRO GLY SER ARG GLY THR ASN GLN LEU ASP GLY MET ASP SEQRES 17 A 327 LEU LEU VAL LEU LEU ASP LEU ILE GLY ALA ALA ASN PRO SEQRES 18 A 327 THR PHE PRO ASN PHE PHE PRO LYS THR THR ARG TRP PHE SEQRES 19 A 327 ASN ARG LEU GLN ALA ILE GLU LYS GLU LEU TYR GLU LEU SEQRES 20 A 327 GLY LEU LEU LYS ASP HIS SER LEU GLU ARG LYS TYR PHE SEQRES 21 A 327 GLN ASN PHE GLY TYR GLY ASN ILE ILE GLN ASP ASP HIS SEQRES 22 A 327 ILE PRO PHE LEU ARG LYS GLY VAL PRO VAL LEU HIS LEU SEQRES 23 A 327 ILE ALA SER PRO PHE PRO GLU VAL TRP HIS THR MET ASP SEQRES 24 A 327 ASP ASN GLU GLU ASN LEU HIS ALA SER THR ILE ASP ASN SEQRES 25 A 327 LEU ASN LYS ILE ILE GLN VAL PHE VAL LEU GLU TYR LEU SEQRES 26 A 327 HIS LEU MODRES 3SI1 ASN A 50 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET ZN A 601 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *52(H2 O) HELIX 1 1 ALA A 36 HIS A 44 5 9 HELIX 2 2 ASN A 50 VAL A 57 1 8 HELIX 3 3 SER A 62 ASP A 70 1 9 HELIX 4 4 LEU A 71 LEU A 75 5 5 HELIX 5 5 PRO A 83 ARG A 98 1 16 HELIX 6 6 SER A 161 ALA A 174 1 14 HELIX 7 7 ASP A 176 SER A 181 1 6 HELIX 8 8 TYR A 215 SER A 227 1 13 HELIX 9 9 ASN A 237 GLY A 241 5 5 HELIX 10 10 PHE A 262 LYS A 264 5 3 HELIX 11 11 THR A 265 GLU A 276 1 12 HELIX 12 12 PHE A 311 GLY A 315 5 5 HELIX 13 13 HIS A 341 LEU A 348 1 8 HELIX 14 14 LEU A 348 LEU A 360 1 13 SHEET 1 A 2 GLU A 106 LEU A 111 0 SHEET 2 A 2 SER A 120 ILE A 125 -1 O PHE A 121 N PHE A 110 SHEET 1 B 4 SER A 193 PHE A 199 0 SHEET 2 B 4 HIS A 135 HIS A 141 1 N LEU A 136 O SER A 193 SHEET 3 B 4 VAL A 246 ASP A 249 1 O VAL A 246 N ALA A 139 SHEET 4 B 4 LEU A 319 ILE A 322 1 O LEU A 321 N ASP A 249 SSBOND 1 CYS A 140 CYS A 165 1555 1555 2.03 LINK ND2 ASN A 50 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O HOH A 19 ZN ZN A 601 1555 1555 2.31 LINK OD2 ASP A 160 ZN ZN A 601 1555 1555 1.98 LINK OE2 GLU A 203 ZN ZN A 601 1555 1555 2.34 LINK NE2 HIS A 331 ZN ZN A 601 1555 1555 2.54 CISPEP 1 ASP A 160 SER A 161 0 -8.20 CISPEP 2 ASP A 184 VAL A 185 0 -9.14 CISPEP 3 HIS A 229 PRO A 230 0 2.76 CISPEP 4 PRO A 231 GLY A 232 0 -0.29 CISPEP 5 SER A 324 PRO A 325 0 2.70 CRYST1 43.240 86.870 97.160 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023127 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011511 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010292 0.00000