HEADER SUGAR BINDING PROTEIN, VIRAL PROTEIN 20-JUN-11 3SIS TITLE CRYSTAL STRUCTURE OF PORCINE CRW-8 ROTAVIRUS VP8* IN COMPLEX WITH TITLE 2 ACERAMIDO-GM3_GC COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER CAPSID PROTEIN VP4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: OUTER CAPSID PROTEIN VP8* (UNP RESIDUES 64-224); COMPND 5 SYNONYM: VP8* CARBOHYDRATE RECOGNITION PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE ROTAVIRUS; SOURCE 3 ORGANISM_COMMON: RV-A; SOURCE 4 ORGANISM_TAXID: 31578; SOURCE 5 STRAIN: CRW-8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P-GEX KEYWDS BETA SANDWICH, LECTIN, GM3, SUGAR BINDING PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.BLANCHARD,X.YU REVDAT 5 13-SEP-23 3SIS 1 HETSYN REVDAT 4 29-JUL-20 3SIS 1 COMPND REMARK SEQADV HET REVDAT 4 2 1 HETNAM HETSYN FORMUL LINK REVDAT 4 3 1 SITE ATOM REVDAT 3 30-NOV-11 3SIS 1 JRNL REVDAT 2 12-OCT-11 3SIS 1 JRNL REVDAT 1 28-SEP-11 3SIS 0 JRNL AUTH X.YU,B.S.COULSON,F.E.FLEMING,J.C.DYASON,M.VON ITZSTEIN, JRNL AUTH 2 H.BLANCHARD JRNL TITL NOVEL STRUCTURAL INSIGHTS INTO ROTAVIRUS RECOGNITION OF JRNL TITL 2 GANGLIOSIDE GLYCAN RECEPTORS. JRNL REF J.MOL.BIOL. V. 413 929 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21945555 JRNL DOI 10.1016/J.JMB.2011.09.005 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 17106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 929 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1097 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.303 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.926 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2756 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3797 ; 1.162 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 6.000 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;32.445 ;24.921 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;13.558 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;11.157 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 441 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2102 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1620 ; 0.468 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2680 ; 0.869 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1136 ; 1.096 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1114 ; 1.862 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3SIS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18082 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 11.72 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.77 REMARK 200 R MERGE FOR SHELL (I) : 0.25800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2I2S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20 MG/ML PROTEIN, 65-75% MPD, 0.1 M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.65500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.38500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.65500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.38500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 62 REMARK 465 SER B 63 REMARK 465 LEU B 64 REMARK 465 LEU B 65 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 13 O HOH A 243 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 131 OH TYR B 194 3555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 99 -57.96 -128.82 REMARK 500 ASP A 100 15.26 -152.59 REMARK 500 THR A 114 124.88 -38.26 REMARK 500 ASN A 183 51.33 -119.29 REMARK 500 ASN A 211 -8.61 -57.45 REMARK 500 ILE B 99 -66.00 -134.04 REMARK 500 ASP B 100 20.62 -149.49 REMARK 500 ASN B 111 64.59 63.62 REMARK 500 PHE B 122 -84.47 64.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A3000 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 142 OD2 REMARK 620 2 GLY A 156 O 97.4 REMARK 620 3 TYR A 165 OH 73.5 120.4 REMARK 620 4 THR A 176 OG1 60.8 150.3 75.1 REMARK 620 5 TYR A 177 O 152.6 109.5 88.4 95.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B3001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 142 OD2 REMARK 620 2 GLY B 156 O 92.8 REMARK 620 3 TYR B 165 OH 71.8 118.2 REMARK 620 4 THR B 176 OG1 60.9 148.3 72.7 REMARK 620 5 TYR B 177 O 154.8 112.0 91.5 96.6 REMARK 620 6 ASN B 178 OD1 113.6 88.8 152.7 86.5 73.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I2S RELATED DB: PDB REMARK 900 ROTAVIRUS CRW-8 VP8* IN COMPLEX WITH MONOSACCHARIDE AMENEU5AC REMARK 900 RELATED ID: 3SIT RELATED DB: PDB REMARK 900 PORCINE CRW-8 ROTAVIRUS VP8* IN COMPLEX WITH ACERAMIDO-GM3 DBREF 3SIS A 64 224 UNP P0C6Y8 VP4_ROTP3 64 224 DBREF 3SIS B 64 224 UNP P0C6Y8 VP4_ROTP3 64 224 SEQADV 3SIS GLY A 62 UNP P0C6Y8 EXPRESSION TAG SEQADV 3SIS SER A 63 UNP P0C6Y8 EXPRESSION TAG SEQADV 3SIS GLN A 70 UNP P0C6Y8 ARG 70 ENGINEERED MUTATION SEQADV 3SIS ILE A 82 UNP P0C6Y8 VAL 82 ENGINEERED MUTATION SEQADV 3SIS ASN A 151 UNP P0C6Y8 SER 151 ENGINEERED MUTATION SEQADV 3SIS SER A 201 UNP P0C6Y8 LEU 201 ENGINEERED MUTATION SEQADV 3SIS GLY B 62 UNP P0C6Y8 EXPRESSION TAG SEQADV 3SIS SER B 63 UNP P0C6Y8 EXPRESSION TAG SEQADV 3SIS GLN B 70 UNP P0C6Y8 ARG 70 ENGINEERED MUTATION SEQADV 3SIS ILE B 82 UNP P0C6Y8 VAL 82 ENGINEERED MUTATION SEQADV 3SIS ASN B 151 UNP P0C6Y8 SER 151 ENGINEERED MUTATION SEQADV 3SIS SER B 201 UNP P0C6Y8 LEU 201 ENGINEERED MUTATION SEQRES 1 A 163 GLY SER LEU LEU ASP GLY PRO TYR GLN PRO THR THR PHE SEQRES 2 A 163 ASN PRO PRO THR SER TYR TRP ILE LEU LEU ALA PRO THR SEQRES 3 A 163 VAL GLU GLY VAL VAL ILE GLN GLY THR ASN ASN ILE ASP SEQRES 4 A 163 ARG TRP LEU ALA THR ILE LEU ILE GLU PRO ASN VAL GLN SEQRES 5 A 163 THR THR ASN ARG ILE TYR ASN LEU PHE GLY GLN GLN VAL SEQRES 6 A 163 THR LEU SER VAL GLU ASN THR SER GLN THR GLN TRP LYS SEQRES 7 A 163 PHE ILE ASP VAL SER LYS THR THR PRO THR GLY ASN TYR SEQRES 8 A 163 THR GLN HIS GLY PRO LEU PHE SER THR PRO LYS LEU TYR SEQRES 9 A 163 ALA VAL MET LYS PHE SER GLY ARG ILE TYR THR TYR ASN SEQRES 10 A 163 GLY THR THR PRO ASN ALA THR THR GLY TYR TYR SER THR SEQRES 11 A 163 THR ASN TYR ASP THR VAL ASN MET THR SER PHE CYS ASP SEQRES 12 A 163 PHE TYR ILE ILE PRO ARG ASN GLN GLU GLU LYS CYS THR SEQRES 13 A 163 GLU TYR ILE ASN HIS GLY LEU SEQRES 1 B 163 GLY SER LEU LEU ASP GLY PRO TYR GLN PRO THR THR PHE SEQRES 2 B 163 ASN PRO PRO THR SER TYR TRP ILE LEU LEU ALA PRO THR SEQRES 3 B 163 VAL GLU GLY VAL VAL ILE GLN GLY THR ASN ASN ILE ASP SEQRES 4 B 163 ARG TRP LEU ALA THR ILE LEU ILE GLU PRO ASN VAL GLN SEQRES 5 B 163 THR THR ASN ARG ILE TYR ASN LEU PHE GLY GLN GLN VAL SEQRES 6 B 163 THR LEU SER VAL GLU ASN THR SER GLN THR GLN TRP LYS SEQRES 7 B 163 PHE ILE ASP VAL SER LYS THR THR PRO THR GLY ASN TYR SEQRES 8 B 163 THR GLN HIS GLY PRO LEU PHE SER THR PRO LYS LEU TYR SEQRES 9 B 163 ALA VAL MET LYS PHE SER GLY ARG ILE TYR THR TYR ASN SEQRES 10 B 163 GLY THR THR PRO ASN ALA THR THR GLY TYR TYR SER THR SEQRES 11 B 163 THR ASN TYR ASP THR VAL ASN MET THR SER PHE CYS ASP SEQRES 12 B 163 PHE TYR ILE ILE PRO ARG ASN GLN GLU GLU LYS CYS THR SEQRES 13 B 163 GLU TYR ILE ASN HIS GLY LEU HET GLC C 1 12 HET GAL C 2 11 HET NGC C 3 21 HET MN0 A6535 23 HET NA A3000 1 HET NA B3001 1 HET MPD B4210 8 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NGC N-GLYCOLYL-ALPHA-NEURAMINIC ACID HETNAM MN0 METHYL 3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO- HETNAM 2 MN0 ALPHA-D-GALACTO-NON-2-ULOPYRANOSIDONIC ACID HETNAM NA SODIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN NGC N-GLYCOLYLNEURAMINIC ACID; SIALIC ACID; 3,5-DIDEOXY-5- HETSYN 2 NGC [(HYDROXYACETYL)AMINO]-D-GLYCERO-ALPHA-D-GALACTO-NON- HETSYN 3 NGC 2-ULOPYRANOSONIC ACID HETSYN MN0 METHYL 3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO- HETSYN 2 MN0 ALPHA-D-GALACTO-NON-2-ULOSIDONIC ACID; METHYL 3,5- HETSYN 3 MN0 DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO-D-GALACTO- HETSYN 4 MN0 NON-2-ULOSIDONIC ACID; METHYL 3,5-DIDEOXY-5- HETSYN 5 MN0 [(HYDROXYACETYL)AMINO]-D-GLYCERO-GALACTO-NON-2- HETSYN 6 MN0 ULOSIDONIC ACID FORMUL 3 GLC C6 H12 O6 FORMUL 3 GAL C6 H12 O6 FORMUL 3 NGC C11 H19 N O10 FORMUL 4 MN0 C12 H21 N O10 FORMUL 5 NA 2(NA 1+) FORMUL 7 MPD C6 H14 O2 FORMUL 8 HOH *141(H2 O) HELIX 1 1 ASN A 193 VAL A 197 5 5 HELIX 2 2 GLN A 212 GLY A 223 1 12 HELIX 3 3 ASN B 193 VAL B 197 5 5 HELIX 4 4 GLN B 212 GLY B 223 1 12 SHEET 1 A11 ASP A 66 TYR A 69 0 SHEET 2 A11 PHE A 205 PRO A 209 -1 O PHE A 205 N TYR A 69 SHEET 3 A11 TYR A 80 LEU A 84 -1 N TRP A 81 O ILE A 208 SHEET 4 A11 TYR A 165 PHE A 170 -1 O TYR A 165 N LEU A 84 SHEET 5 A11 ARG A 173 THR A 180 -1 O TYR A 175 N MET A 168 SHEET 6 A11 THR A 153 SER A 160 1 N PRO A 157 O GLY A 179 SHEET 7 A11 TRP A 138 LYS A 145 -1 N TRP A 138 O SER A 160 SHEET 8 A11 TRP A 102 ILE A 108 -1 N ILE A 108 O LYS A 139 SHEET 9 A11 GLY A 90 THR A 96 -1 N VAL A 92 O THR A 105 SHEET 10 A11 ASN A 198 SER A 201 -1 O THR A 200 N GLN A 94 SHEET 11 A11 THR A 72 PHE A 74 -1 N PHE A 74 O MET A 199 SHEET 1 B 6 ASP A 66 TYR A 69 0 SHEET 2 B 6 PHE A 205 PRO A 209 -1 O PHE A 205 N TYR A 69 SHEET 3 B 6 TYR A 80 LEU A 84 -1 N TRP A 81 O ILE A 208 SHEET 4 B 6 TYR A 165 PHE A 170 -1 O TYR A 165 N LEU A 84 SHEET 5 B 6 ARG A 173 THR A 180 -1 O TYR A 175 N MET A 168 SHEET 6 B 6 THR A 185 SER A 190 -1 O THR A 185 N ASN A 178 SHEET 1 C 2 VAL A 112 LEU A 121 0 SHEET 2 C 2 GLN A 124 ASN A 132 -1 O VAL A 126 N TYR A 119 SHEET 1 D 8 THR B 72 PHE B 74 0 SHEET 2 D 8 ASN B 198 SER B 201 -1 O MET B 199 N PHE B 74 SHEET 3 D 8 GLY B 90 THR B 96 -1 N GLN B 94 O THR B 200 SHEET 4 D 8 TRP B 102 ILE B 108 -1 O THR B 105 N VAL B 92 SHEET 5 D 8 TRP B 138 LYS B 145 -1 O VAL B 143 N ALA B 104 SHEET 6 D 8 THR B 153 SER B 160 -1 O SER B 160 N TRP B 138 SHEET 7 D 8 ARG B 173 THR B 180 1 O GLY B 179 N PHE B 159 SHEET 8 D 8 THR B 185 SER B 190 -1 O THR B 185 N ASN B 178 SHEET 1 E10 THR B 72 PHE B 74 0 SHEET 2 E10 ASN B 198 SER B 201 -1 O MET B 199 N PHE B 74 SHEET 3 E10 GLY B 90 THR B 96 -1 N GLN B 94 O THR B 200 SHEET 4 E10 TRP B 102 ILE B 108 -1 O THR B 105 N VAL B 92 SHEET 5 E10 TRP B 138 LYS B 145 -1 O VAL B 143 N ALA B 104 SHEET 6 E10 THR B 153 SER B 160 -1 O SER B 160 N TRP B 138 SHEET 7 E10 ARG B 173 THR B 180 1 O GLY B 179 N PHE B 159 SHEET 8 E10 TYR B 165 PHE B 170 -1 N MET B 168 O TYR B 175 SHEET 9 E10 TYR B 80 ALA B 85 -1 N LEU B 84 O TYR B 165 SHEET 10 E10 ASP B 204 PRO B 209 -1 O ILE B 208 N TRP B 81 SHEET 1 F 2 VAL B 112 LEU B 121 0 SHEET 2 F 2 GLN B 124 ASN B 132 -1 O ASN B 132 N VAL B 112 LINK O4 GLC C 1 C1 GAL C 2 1555 1555 1.45 LINK O3 GAL C 2 C2 NGC C 3 1555 1555 1.45 LINK OD2 ASP A 142 NA NA A3000 1555 1555 2.66 LINK O GLY A 156 NA NA A3000 1555 1555 2.26 LINK OH TYR A 165 NA NA A3000 1555 1555 2.42 LINK OG1 THR A 176 NA NA A3000 1555 1555 2.61 LINK O TYR A 177 NA NA A3000 1555 1555 2.34 LINK OD2 ASP B 142 NA NA B3001 1555 1555 2.53 LINK O GLY B 156 NA NA B3001 1555 1555 2.26 LINK OH TYR B 165 NA NA B3001 1555 1555 2.35 LINK OG1 THR B 176 NA NA B3001 1555 1555 2.73 LINK O TYR B 177 NA NA B3001 1555 1555 2.26 LINK OD1BASN B 178 NA NA B3001 1555 1555 2.41 CISPEP 1 GLY A 67 PRO A 68 0 4.57 CISPEP 2 THR A 181 PRO A 182 0 7.77 CISPEP 3 GLY B 67 PRO B 68 0 4.75 CISPEP 4 THR B 181 PRO B 182 0 4.51 CRYST1 55.310 56.770 110.700 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018080 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009033 0.00000