HEADER TRANSFERASE 22-JUN-11 3SK3 TITLE CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM ACETATE KINASE (ACKA) WITH TITLE 2 CITRATE BOUND AT THE DIMERIC INTERFACE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACETOKINASE; COMPND 5 EC: 2.7.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 STRAIN: 12529; SOURCE 6 GENE: ACKA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRSET C KEYWDS ACTIN-LIKE ATPASE DOMAIN, ASKHA SUPERFAMILY OF PHOSPHOTRANSFERASE, KEYWDS 2 ACETOKINASE, ATP BINDING, PHOSPHOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.CHITTORI,H.S.SAVITHRI,M.R.N.MURTHY REVDAT 4 30-OCT-24 3SK3 1 REMARK REVDAT 3 01-NOV-23 3SK3 1 REMARK SEQADV REVDAT 2 31-OCT-12 3SK3 1 JRNL REVDAT 1 29-AUG-12 3SK3 0 JRNL AUTH S.CHITTORI,H.S.SAVITHRI,M.R.N.MURTHY JRNL TITL STRUCTURAL AND MECHANISTIC INVESTIGATIONS ON SALMONELLA JRNL TITL 2 TYPHIMURIUM ACETATE KINASE (ACKA): IDENTIFICATION OF A JRNL TITL 3 PUTATIVE LIGAND BINDING POCKET AT THE DIMERIC INTERFACE JRNL REF BMC STRUCT.BIOL. V. 12 24 2012 JRNL REFN ESSN 1472-6807 JRNL PMID 23031654 JRNL DOI 10.1186/1472-6807-12-24 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 75099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3977 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4885 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 300 REMARK 3 BIN FREE R VALUE : 0.4250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 442 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : 1.49000 REMARK 3 B33 (A**2) : -1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.99000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.310 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5976 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8098 ; 1.414 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 781 ; 5.908 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 253 ;34.841 ;24.427 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 983 ;14.850 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;22.701 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 925 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4503 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3831 ; 0.858 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6121 ; 1.549 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2145 ; 2.388 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1970 ; 3.904 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80227 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.78600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2IIR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 1.4M SODIUM CITRATE, PH REMARK 280 7.5, UNDER-OIL MICROBATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.50600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.50600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 621 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 ARG A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 GLY A -4 REMARK 465 MET A -3 REMARK 465 ALA A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 238 REMARK 465 VAL A 239 REMARK 465 MET A 240 REMARK 465 GLY A 241 REMARK 465 THR A 242 REMARK 465 ARG A 243 REMARK 465 SER A 244 REMARK 465 THR A 271 REMARK 465 LYS A 272 REMARK 465 GLU A 273 REMARK 465 SER A 274 REMARK 465 GLY A 275 REMARK 465 LEU A 276 REMARK 465 MET B -14 REMARK 465 ARG B -13 REMARK 465 GLY B -12 REMARK 465 SER B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 GLY B -4 REMARK 465 MET B -3 REMARK 465 ALA B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLN B 265 REMARK 465 ILE B 266 REMARK 465 ASN B 267 REMARK 465 LYS B 268 REMARK 465 MET B 269 REMARK 465 LEU B 270 REMARK 465 THR B 271 REMARK 465 LYS B 272 REMARK 465 GLU B 273 REMARK 465 SER B 274 REMARK 465 GLY B 275 REMARK 465 LEU B 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CE NZ REMARK 470 LYS A 45 NZ REMARK 470 LYS A 47 NZ REMARK 470 LYS A 142 CE NZ REMARK 470 LYS A 172 CD CE NZ REMARK 470 ASN A 213 CG OD1 ND2 REMARK 470 ASP A 246 CG OD1 OD2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 LEU A 277 CG CD1 CD2 REMARK 470 VAL A 289 CG1 CG2 REMARK 470 GLU A 290 CB CG CD OE1 OE2 REMARK 470 TYR A 293 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 293 OH REMARK 470 LYS A 296 CD CE NZ REMARK 470 LYS A 300 CE NZ REMARK 470 LYS A 368 CD CE NZ REMARK 470 LYS B 4 NZ REMARK 470 LYS B 17 CE NZ REMARK 470 LYS B 52 CE NZ REMARK 470 LYS B 98 NZ REMARK 470 LYS B 142 CE NZ REMARK 470 LYS B 172 CD CE NZ REMARK 470 GLU B 173 OE1 OE2 REMARK 470 LYS B 368 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 62 -144.06 -146.97 REMARK 500 ALA B 62 -141.70 -139.92 REMARK 500 ALA B 120 64.48 28.89 REMARK 500 TYR B 179 -30.74 -131.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G99 RELATED DB: PDB REMARK 900 METHANOSARCINA THERMOPHILA ACETATE KINASE REMARK 900 RELATED ID: 2IIR RELATED DB: PDB REMARK 900 THERMOTOGA MARITIMA ACETATE KINASE REMARK 900 RELATED ID: 3P4I RELATED DB: PDB REMARK 900 MYCOBACTERIUM AVIUM ACETATE KINASE REMARK 900 RELATED ID: 3KHY RELATED DB: PDB REMARK 900 FRANCISELLA TULARENSIS PUTATIVE ACETATE/PROPIONATE KINASE REMARK 900 RELATED ID: 2E1Y RELATED DB: PDB REMARK 900 SALMONELLA TYPHIMURIUM PROPIONATE KINASE REMARK 900 RELATED ID: 1SAZ RELATED DB: PDB REMARK 900 THERMOTOGA MARITIMA PUTATIVE BUTYRATE KINASE 2 DBREF 3SK3 A 1 400 UNP P63411 ACKA_SALTY 1 400 DBREF 3SK3 B 1 400 UNP P63411 ACKA_SALTY 1 400 SEQADV 3SK3 MET A -14 UNP P63411 EXPRESSION TAG SEQADV 3SK3 ARG A -13 UNP P63411 EXPRESSION TAG SEQADV 3SK3 GLY A -12 UNP P63411 EXPRESSION TAG SEQADV 3SK3 SER A -11 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS A -10 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS A -9 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS A -8 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS A -7 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS A -6 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS A -5 UNP P63411 EXPRESSION TAG SEQADV 3SK3 GLY A -4 UNP P63411 EXPRESSION TAG SEQADV 3SK3 MET A -3 UNP P63411 EXPRESSION TAG SEQADV 3SK3 ALA A -2 UNP P63411 EXPRESSION TAG SEQADV 3SK3 SER A -1 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS A 0 UNP P63411 EXPRESSION TAG SEQADV 3SK3 MET B -14 UNP P63411 EXPRESSION TAG SEQADV 3SK3 ARG B -13 UNP P63411 EXPRESSION TAG SEQADV 3SK3 GLY B -12 UNP P63411 EXPRESSION TAG SEQADV 3SK3 SER B -11 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS B -10 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS B -9 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS B -8 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS B -7 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS B -6 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS B -5 UNP P63411 EXPRESSION TAG SEQADV 3SK3 GLY B -4 UNP P63411 EXPRESSION TAG SEQADV 3SK3 MET B -3 UNP P63411 EXPRESSION TAG SEQADV 3SK3 ALA B -2 UNP P63411 EXPRESSION TAG SEQADV 3SK3 SER B -1 UNP P63411 EXPRESSION TAG SEQADV 3SK3 HIS B 0 UNP P63411 EXPRESSION TAG SEQRES 1 A 415 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 415 SER HIS MET SER SER LYS LEU VAL LEU VAL LEU ASN CYS SEQRES 3 A 415 GLY SER SER SER LEU LYS PHE ALA ILE ILE ASP ALA VAL SEQRES 4 A 415 ASN GLY ASP GLU TYR LEU SER GLY LEU ALA GLU CYS PHE SEQRES 5 A 415 HIS LEU PRO GLU ALA ARG ILE LYS TRP LYS MET ASP GLY SEQRES 6 A 415 SER LYS GLN GLU ALA ALA LEU GLY ALA GLY ALA ALA HIS SEQRES 7 A 415 SER GLU ALA LEU ASN PHE ILE VAL ASN THR ILE LEU ALA SEQRES 8 A 415 GLN LYS PRO GLU LEU SER ALA GLN LEU THR ALA ILE GLY SEQRES 9 A 415 HIS ARG ILE VAL HIS GLY GLY GLU LYS TYR THR SER SER SEQRES 10 A 415 VAL VAL ILE ASP GLU SER VAL ILE GLN GLY ILE LYS ASP SEQRES 11 A 415 SER ALA SER PHE ALA PRO LEU HIS ASN PRO ALA HIS LEU SEQRES 12 A 415 ILE GLY ILE ALA GLU ALA LEU LYS SER PHE PRO GLN LEU SEQRES 13 A 415 LYS ASP LYS ASN VAL ALA VAL PHE ASP THR ALA PHE HIS SEQRES 14 A 415 GLN THR MET PRO GLU GLU SER TYR LEU TYR ALA LEU PRO SEQRES 15 A 415 TYR SER LEU TYR LYS GLU HIS GLY VAL ARG ARG TYR GLY SEQRES 16 A 415 ALA HIS GLY THR SER HIS PHE TYR VAL THR GLN GLU ALA SEQRES 17 A 415 ALA LYS MET LEU ASN LYS PRO VAL GLU GLU LEU ASN ILE SEQRES 18 A 415 ILE THR CYS HIS LEU GLY ASN GLY GLY SER VAL SER ALA SEQRES 19 A 415 ILE ARG ASN GLY LYS CYS VAL ASP THR SER MET GLY LEU SEQRES 20 A 415 THR PRO LEU GLU GLY LEU VAL MET GLY THR ARG SER GLY SEQRES 21 A 415 ASP ILE ASP PRO ALA ILE ILE PHE HIS LEU HIS ASP THR SEQRES 22 A 415 LEU GLY MET SER VAL ASP GLN ILE ASN LYS MET LEU THR SEQRES 23 A 415 LYS GLU SER GLY LEU LEU GLY LEU THR GLU VAL THR SER SEQRES 24 A 415 ASP CYS ARG TYR VAL GLU ASP ASN TYR ALA THR LYS GLU SEQRES 25 A 415 ASP ALA LYS ARG ALA MET ASP VAL TYR CYS HIS ARG LEU SEQRES 26 A 415 ALA LYS TYR ILE GLY SER TYR THR ALA LEU MET ASP GLY SEQRES 27 A 415 ARG LEU ASP ALA VAL VAL PHE THR GLY GLY ILE GLY GLU SEQRES 28 A 415 ASN ALA ALA MET VAL ARG GLU LEU SER LEU GLY LYS LEU SEQRES 29 A 415 GLY VAL LEU GLY PHE GLU VAL ASP HIS GLU ARG ASN LEU SEQRES 30 A 415 ALA ALA ARG PHE GLY LYS SER GLY PHE ILE ASN LYS GLU SEQRES 31 A 415 GLY THR ARG PRO ALA VAL VAL ILE PRO THR ASN GLU GLU SEQRES 32 A 415 LEU VAL ILE ALA GLN ASP ALA SER ARG LEU THR ALA SEQRES 1 B 415 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 B 415 SER HIS MET SER SER LYS LEU VAL LEU VAL LEU ASN CYS SEQRES 3 B 415 GLY SER SER SER LEU LYS PHE ALA ILE ILE ASP ALA VAL SEQRES 4 B 415 ASN GLY ASP GLU TYR LEU SER GLY LEU ALA GLU CYS PHE SEQRES 5 B 415 HIS LEU PRO GLU ALA ARG ILE LYS TRP LYS MET ASP GLY SEQRES 6 B 415 SER LYS GLN GLU ALA ALA LEU GLY ALA GLY ALA ALA HIS SEQRES 7 B 415 SER GLU ALA LEU ASN PHE ILE VAL ASN THR ILE LEU ALA SEQRES 8 B 415 GLN LYS PRO GLU LEU SER ALA GLN LEU THR ALA ILE GLY SEQRES 9 B 415 HIS ARG ILE VAL HIS GLY GLY GLU LYS TYR THR SER SER SEQRES 10 B 415 VAL VAL ILE ASP GLU SER VAL ILE GLN GLY ILE LYS ASP SEQRES 11 B 415 SER ALA SER PHE ALA PRO LEU HIS ASN PRO ALA HIS LEU SEQRES 12 B 415 ILE GLY ILE ALA GLU ALA LEU LYS SER PHE PRO GLN LEU SEQRES 13 B 415 LYS ASP LYS ASN VAL ALA VAL PHE ASP THR ALA PHE HIS SEQRES 14 B 415 GLN THR MET PRO GLU GLU SER TYR LEU TYR ALA LEU PRO SEQRES 15 B 415 TYR SER LEU TYR LYS GLU HIS GLY VAL ARG ARG TYR GLY SEQRES 16 B 415 ALA HIS GLY THR SER HIS PHE TYR VAL THR GLN GLU ALA SEQRES 17 B 415 ALA LYS MET LEU ASN LYS PRO VAL GLU GLU LEU ASN ILE SEQRES 18 B 415 ILE THR CYS HIS LEU GLY ASN GLY GLY SER VAL SER ALA SEQRES 19 B 415 ILE ARG ASN GLY LYS CYS VAL ASP THR SER MET GLY LEU SEQRES 20 B 415 THR PRO LEU GLU GLY LEU VAL MET GLY THR ARG SER GLY SEQRES 21 B 415 ASP ILE ASP PRO ALA ILE ILE PHE HIS LEU HIS ASP THR SEQRES 22 B 415 LEU GLY MET SER VAL ASP GLN ILE ASN LYS MET LEU THR SEQRES 23 B 415 LYS GLU SER GLY LEU LEU GLY LEU THR GLU VAL THR SER SEQRES 24 B 415 ASP CYS ARG TYR VAL GLU ASP ASN TYR ALA THR LYS GLU SEQRES 25 B 415 ASP ALA LYS ARG ALA MET ASP VAL TYR CYS HIS ARG LEU SEQRES 26 B 415 ALA LYS TYR ILE GLY SER TYR THR ALA LEU MET ASP GLY SEQRES 27 B 415 ARG LEU ASP ALA VAL VAL PHE THR GLY GLY ILE GLY GLU SEQRES 28 B 415 ASN ALA ALA MET VAL ARG GLU LEU SER LEU GLY LYS LEU SEQRES 29 B 415 GLY VAL LEU GLY PHE GLU VAL ASP HIS GLU ARG ASN LEU SEQRES 30 B 415 ALA ALA ARG PHE GLY LYS SER GLY PHE ILE ASN LYS GLU SEQRES 31 B 415 GLY THR ARG PRO ALA VAL VAL ILE PRO THR ASN GLU GLU SEQRES 32 B 415 LEU VAL ILE ALA GLN ASP ALA SER ARG LEU THR ALA HET CIT A 501 13 HET EDO A 601 4 HET EDO A 604 4 HET EDO B 602 4 HET EDO B 603 4 HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CIT C6 H8 O7 FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 HOH *442(H2 O) HELIX 1 1 ALA A 62 THR A 73 1 12 HELIX 2 2 LYS A 78 GLN A 84 1 7 HELIX 3 3 ASP A 106 SER A 116 1 11 HELIX 4 4 ALA A 117 ALA A 120 5 4 HELIX 5 5 HIS A 123 PHE A 138 1 16 HELIX 6 6 PRO A 139 LYS A 142 5 4 HELIX 7 7 THR A 151 MET A 157 5 7 HELIX 8 8 PRO A 158 LEU A 163 1 6 HELIX 9 9 TYR A 168 GLY A 175 1 8 HELIX 10 10 HIS A 182 LEU A 197 1 16 HELIX 11 11 PRO A 200 LEU A 204 5 5 HELIX 12 12 ASP A 248 GLY A 260 1 13 HELIX 13 13 SER A 262 LEU A 270 1 9 HELIX 14 14 SER A 284 TYR A 288 5 5 HELIX 15 15 THR A 295 TYR A 317 1 23 HELIX 16 16 THR A 318 MET A 321 5 4 HELIX 17 17 GLY A 332 GLU A 336 1 5 HELIX 18 18 ALA A 338 LYS A 348 1 11 HELIX 19 19 LEU A 349 GLY A 353 5 5 HELIX 20 20 ASP A 357 ALA A 364 1 8 HELIX 21 21 ASN A 386 ALA A 400 1 15 HELIX 22 22 ALA B 62 THR B 73 1 12 HELIX 23 23 LYS B 78 GLN B 84 1 7 HELIX 24 24 ASP B 106 SER B 116 1 11 HELIX 25 25 HIS B 123 PHE B 138 1 16 HELIX 26 26 PRO B 139 LYS B 142 5 4 HELIX 27 27 THR B 151 MET B 157 5 7 HELIX 28 28 PRO B 158 LEU B 163 1 6 HELIX 29 29 TYR B 168 GLU B 173 1 6 HELIX 30 30 HIS B 182 LEU B 197 1 16 HELIX 31 31 PRO B 200 LEU B 204 5 5 HELIX 32 32 GLY B 245 ILE B 247 5 3 HELIX 33 33 ASP B 248 GLY B 260 1 13 HELIX 34 34 LEU B 277 SER B 284 1 8 HELIX 35 35 THR B 295 TYR B 317 1 23 HELIX 36 36 THR B 318 MET B 321 5 4 HELIX 37 37 GLY B 332 GLU B 336 1 5 HELIX 38 38 ALA B 338 LYS B 348 1 11 HELIX 39 39 LEU B 349 GLY B 353 5 5 HELIX 40 40 ASP B 357 ALA B 364 1 8 HELIX 41 41 ASN B 386 ALA B 400 1 15 SHEET 1 A 8 SER A 51 ALA A 56 0 SHEET 2 A 8 ARG A 43 MET A 48 -1 N TRP A 46 O GLN A 53 SHEET 3 A 8 GLU A 28 GLU A 35 -1 N SER A 31 O LYS A 47 SHEET 4 A 8 LEU A 16 ASP A 22 -1 N ILE A 20 O TYR A 29 SHEET 5 A 8 LEU A 5 CYS A 11 -1 N VAL A 8 O ALA A 19 SHEET 6 A 8 LEU A 85 ILE A 92 1 O GLY A 89 N LEU A 9 SHEET 7 A 8 ASN A 145 PHE A 149 1 O VAL A 146 N HIS A 90 SHEET 8 A 8 VAL A 103 VAL A 104 -1 N VAL A 103 O ALA A 147 SHEET 1 B 6 LYS A 224 THR A 228 0 SHEET 2 B 6 SER A 216 ARG A 221 -1 N ALA A 219 O VAL A 226 SHEET 3 B 6 ILE A 206 HIS A 210 -1 N ILE A 206 O ILE A 220 SHEET 4 B 6 ALA A 327 THR A 331 1 O VAL A 329 N ILE A 207 SHEET 5 B 6 ALA A 380 VAL A 382 1 O VAL A 381 N PHE A 330 SHEET 6 B 6 GLY A 370 PHE A 371 -1 N GLY A 370 O VAL A 382 SHEET 1 C 8 SER B 51 ALA B 56 0 SHEET 2 C 8 ARG B 43 MET B 48 -1 N TRP B 46 O GLN B 53 SHEET 3 C 8 GLU B 28 GLU B 35 -1 N LEU B 33 O LYS B 45 SHEET 4 C 8 LEU B 16 ASP B 22 -1 N LEU B 16 O ALA B 34 SHEET 5 C 8 LEU B 5 CYS B 11 -1 N VAL B 8 O ALA B 19 SHEET 6 C 8 LEU B 85 ILE B 92 1 O GLY B 89 N LEU B 9 SHEET 7 C 8 ASN B 145 PHE B 149 1 O VAL B 148 N ILE B 92 SHEET 8 C 8 VAL B 103 VAL B 104 -1 N VAL B 103 O ALA B 147 SHEET 1 D 6 LYS B 224 SER B 229 0 SHEET 2 D 6 GLY B 215 ARG B 221 -1 N ALA B 219 O VAL B 226 SHEET 3 D 6 ILE B 206 LEU B 211 -1 N ILE B 206 O ILE B 220 SHEET 4 D 6 ALA B 327 THR B 331 1 O VAL B 329 N ILE B 207 SHEET 5 D 6 ALA B 380 VAL B 382 1 O VAL B 381 N PHE B 330 SHEET 6 D 6 GLY B 370 PHE B 371 -1 N GLY B 370 O VAL B 382 SHEET 1 E 2 THR B 242 ARG B 243 0 SHEET 2 E 2 TYR B 288 VAL B 289 -1 O VAL B 289 N THR B 242 SSBOND 1 CYS A 36 CYS A 286 1555 1555 2.08 SSBOND 2 CYS B 36 CYS B 286 1555 1555 2.01 CISPEP 1 ASP A 49 GLY A 50 0 -26.56 SITE 1 AC1 16 ARG A 178 ASP A 257 THR A 258 LEU A 259 SITE 2 AC1 16 GLY A 260 TYR A 313 HOH A 422 HOH A 452 SITE 3 AC1 16 HOH A 470 HOH A 478 HOH A 538 HOH A 620 SITE 4 AC1 16 ARG B 309 LYS B 312 HOH B 552 HOH B 608 SITE 1 AC2 4 TYR A 188 GLN A 191 GLU A 192 GLN A 393 SITE 1 AC3 3 GLY A 367 LYS A 368 SER A 369 SITE 1 AC4 4 PHE B 187 GLU B 192 LYS B 195 GLN B 393 SITE 1 AC5 8 VAL B 148 PHE B 149 PHE B 153 THR B 184 SITE 2 AC5 8 PHE B 187 ASP B 394 HOH B 415 HOH B 420 CRYST1 151.012 78.500 97.480 90.00 116.37 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006622 0.000000 0.003282 0.00000 SCALE2 0.000000 0.012739 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011450 0.00000