HEADER RNA 23-JUN-11 3SKW TITLE CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- TITLE 2 DEOXYGUANOSINE, CESIUM SOAK COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (66-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DG RIBOSWITCH (66-MER) SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIBED RNA KEYWDS THREE-WAY RNA JUNCTION, RIBOSWITCH, 2'-DEOXY GUANOSINE, RNA EXPDTA X-RAY DIFFRACTION AUTHOR O.PIKOVSKAYA,A.POLONSKAIA,D.J.PATEL,A.SERGANOV REVDAT 4 13-MAR-24 3SKW 1 COMPND SOURCE REVDAT 3 28-FEB-24 3SKW 1 REMARK LINK REVDAT 2 26-OCT-11 3SKW 1 JRNL REVDAT 1 17-AUG-11 3SKW 0 JRNL AUTH O.PIKOVSKAYA,A.POLONSKAIA,D.J.PATEL,A.SERGANOV JRNL TITL STRUCTURAL PRINCIPLES OF NUCLEOSIDE SELECTIVITY IN A JRNL TITL 2 2'-DEOXYGUANOSINE RIBOSWITCH. JRNL REF NAT.CHEM.BIOL. V. 7 748 2011 JRNL REFN ISSN 1552-4450 JRNL PMID 21841796 JRNL DOI 10.1038/NCHEMBIO.631 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 8847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6464 - 6.4612 0.93 1364 150 0.2080 0.2546 REMARK 3 2 6.4612 - 5.1591 0.95 1370 151 0.1632 0.2832 REMARK 3 3 5.1591 - 4.5160 0.95 1368 137 0.2003 0.2175 REMARK 3 4 4.5160 - 4.1072 0.90 1293 174 0.2182 0.2940 REMARK 3 5 4.1072 - 3.8151 0.88 1309 125 0.2201 0.3012 REMARK 3 6 3.8151 - 3.5916 0.87 1250 139 0.2346 0.3325 REMARK 3 7 3.5916 - 3.4127 0.86 1274 111 0.2267 0.2768 REMARK 3 8 3.4127 - 3.2649 0.87 1256 160 0.2431 0.3488 REMARK 3 9 3.2649 - 3.1397 0.85 1271 118 0.2425 0.3160 REMARK 3 10 3.1397 - 3.0317 0.89 1262 162 0.3130 0.3625 REMARK 3 11 3.0317 - 2.9373 0.73 1032 129 0.3523 0.4164 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.21 REMARK 3 B_SOL : 60.25 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.18700 REMARK 3 B22 (A**2) : -14.87410 REMARK 3 B33 (A**2) : 20.06110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -27.32950 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3208 REMARK 3 ANGLE : 1.045 4979 REMARK 3 CHIRALITY : 0.061 662 REMARK 3 PLANARITY : 0.006 136 REMARK 3 DIHEDRAL : 24.869 1610 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 23:30) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7059 8.6471 37.4505 REMARK 3 T TENSOR REMARK 3 T11: 0.9956 T22: 1.5067 REMARK 3 T33: 0.7281 T12: 0.4790 REMARK 3 T13: 0.0973 T23: 0.1147 REMARK 3 L TENSOR REMARK 3 L11: 0.0146 L22: 0.0754 REMARK 3 L33: 0.0314 L12: -0.0320 REMARK 3 L13: 0.0165 L23: -0.0475 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.0090 S13: 0.0359 REMARK 3 S21: 0.1072 S22: 0.1199 S23: 0.1281 REMARK 3 S31: 0.2135 S32: 0.0430 S33: -0.0284 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 81:88) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6500 9.2905 33.6996 REMARK 3 T TENSOR REMARK 3 T11: 0.6868 T22: 1.6470 REMARK 3 T33: 0.7232 T12: 0.1582 REMARK 3 T13: 0.0888 T23: -0.1478 REMARK 3 L TENSOR REMARK 3 L11: 0.2546 L22: 0.5223 REMARK 3 L33: 0.0826 L12: 0.1772 REMARK 3 L13: 0.1287 L23: 0.0340 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: -0.0683 S13: 0.0087 REMARK 3 S21: 0.1315 S22: 0.0682 S23: 0.1401 REMARK 3 S31: 0.0547 S32: 0.0669 S33: -0.0377 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 31:60) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1539 16.2886 43.5886 REMARK 3 T TENSOR REMARK 3 T11: 0.9172 T22: 1.2291 REMARK 3 T33: 0.7468 T12: 0.2602 REMARK 3 T13: -0.1487 T23: -0.1030 REMARK 3 L TENSOR REMARK 3 L11: 0.6593 L22: 0.4993 REMARK 3 L33: 0.0493 L12: 0.2859 REMARK 3 L13: -0.1092 L23: 0.0651 REMARK 3 S TENSOR REMARK 3 S11: 0.1682 S12: -0.4999 S13: 0.1323 REMARK 3 S21: 0.1119 S22: -0.1273 S23: -0.2200 REMARK 3 S31: -0.2945 S32: 0.0970 S33: -0.0185 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 61:80) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4512 5.0532 52.7252 REMARK 3 T TENSOR REMARK 3 T11: 0.9168 T22: 1.3351 REMARK 3 T33: 0.6720 T12: -0.0217 REMARK 3 T13: -0.1789 T23: 0.0512 REMARK 3 L TENSOR REMARK 3 L11: 0.0157 L22: 0.1273 REMARK 3 L33: 0.3560 L12: 0.0463 REMARK 3 L13: 0.0025 L23: 0.0699 REMARK 3 S TENSOR REMARK 3 S11: 0.1116 S12: -0.1023 S13: -0.0745 REMARK 3 S21: 0.2757 S22: -0.1696 S23: -0.0530 REMARK 3 S31: 0.2278 S32: -0.1554 S33: 0.0362 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 23:30) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1615 3.0366 24.8377 REMARK 3 T TENSOR REMARK 3 T11: 0.5361 T22: 0.8928 REMARK 3 T33: 0.5340 T12: -0.1276 REMARK 3 T13: 0.0264 T23: 0.1631 REMARK 3 L TENSOR REMARK 3 L11: 0.3755 L22: 0.1561 REMARK 3 L33: 1.2519 L12: 0.1638 REMARK 3 L13: -0.2463 L23: 0.0405 REMARK 3 S TENSOR REMARK 3 S11: -0.1833 S12: -0.0453 S13: 0.0376 REMARK 3 S21: 0.0390 S22: -0.1022 S23: -0.0656 REMARK 3 S31: 0.1174 S32: 0.1101 S33: 0.1198 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 81:88) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2918 1.5844 24.8284 REMARK 3 T TENSOR REMARK 3 T11: 0.3333 T22: 0.8505 REMARK 3 T33: 0.6466 T12: -0.0263 REMARK 3 T13: -0.0254 T23: -0.0678 REMARK 3 L TENSOR REMARK 3 L11: 0.2364 L22: 0.0842 REMARK 3 L33: 0.0586 L12: 0.1359 REMARK 3 L13: 0.1174 L23: 0.0673 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: 0.0105 S13: -0.0077 REMARK 3 S21: 0.0359 S22: 0.2386 S23: -0.1330 REMARK 3 S31: -0.0901 S32: 0.2839 S33: -0.1300 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 31:60) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5641 -6.3307 8.5685 REMARK 3 T TENSOR REMARK 3 T11: 0.1275 T22: -0.2134 REMARK 3 T33: 0.2149 T12: 0.1256 REMARK 3 T13: 0.1597 T23: -0.1105 REMARK 3 L TENSOR REMARK 3 L11: 0.1319 L22: 0.1464 REMARK 3 L33: 0.0511 L12: -0.1384 REMARK 3 L13: -0.0804 L23: 0.1078 REMARK 3 S TENSOR REMARK 3 S11: -0.1607 S12: 0.0630 S13: -0.3174 REMARK 3 S21: -0.0684 S22: -0.0580 S23: 0.0286 REMARK 3 S31: 0.1233 S32: 0.0802 S33: -0.3238 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8847 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M NA-HEPES, PH 7.5, ~40 % (V/V) REMARK 280 PENTAERYTHRITOL PROPOXYLATE, 0.2 M KCL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.18800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.70700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.18800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.70700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GTP A 23 C3' - O3' - P ANGL. DEV. = -14.0 DEGREES REMARK 500 G A 47 C6 - C5 - N7 ANGL. DEV. = -3.6 DEGREES REMARK 500 GTP B 23 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNG A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNG B 120 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SKI RELATED DB: PDB REMARK 900 RELATED ID: 3SKT RELATED DB: PDB REMARK 900 RELATED ID: 3SKL RELATED DB: PDB REMARK 900 RELATED ID: 3SKR RELATED DB: PDB REMARK 900 RELATED ID: 3SKZ RELATED DB: PDB DBREF 3SKW A 23 88 PDB 3SKW 3SKW 23 88 DBREF 3SKW B 23 88 PDB 3SKW 3SKW 23 88 SEQRES 1 A 66 GTP G C U U A U A C A G G G SEQRES 2 A 66 U A G C A U A A U G G G C SEQRES 3 A 66 U A C U G A C C C C G C C SEQRES 4 A 66 U U C A A A C C U A U U U SEQRES 5 A 66 G G A G A C U A U A A G U SEQRES 6 A 66 CCC SEQRES 1 B 66 GTP G C U U A U A C A G G G SEQRES 2 B 66 U A G C A U A A U G G G C SEQRES 3 B 66 U A C U G A C C C C G C C SEQRES 4 B 66 U U C A A A C C U A U U U SEQRES 5 B 66 G G A G A C U A U A A G U SEQRES 6 B 66 CCC MODRES 3SKW GTP A 23 G GUANOSINE-5'-TRIPHOSPHATE MODRES 3SKW CCC A 88 C MODRES 3SKW GTP B 23 G GUANOSINE-5'-TRIPHOSPHATE MODRES 3SKW CCC B 88 C HET GTP A 23 32 HET CCC A 88 23 HET GTP B 23 32 HET CCC B 88 23 HET GNG A 120 19 HET CS A 201 1 HET CS A 202 1 HET CS A 203 1 HET CS A 204 1 HET CS A 205 1 HET MG A 206 1 HET CS A 304 1 HET MG A 305 1 HET GNG B 120 19 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM GNG 2'-DEOXY-GUANOSINE HETNAM CS CESIUM ION HETNAM MG MAGNESIUM ION FORMUL 1 GTP 2(C10 H16 N5 O14 P3) FORMUL 1 CCC 2(C9 H13 N3 O10 P2) FORMUL 3 GNG 2(C10 H13 N5 O4) FORMUL 4 CS 6(CS 1+) FORMUL 9 MG 2(MG 2+) FORMUL 13 HOH *2(H2 O) LINK O3' GTP A 23 P G A 24 1555 1555 1.59 LINK O3' U A 87 P CCC A 88 1555 1555 1.61 LINK O3' GTP B 23 P G B 24 1555 1555 1.60 LINK O3' U B 87 P CCC B 88 1555 1555 1.60 SITE 1 AC1 9 A A 30 C A 31 C A 56 C A 57 SITE 2 AC1 9 C A 58 G A 59 C A 80 U A 81 SITE 3 AC1 9 CS A 202 SITE 1 AC2 4 G A 46 G A 47 A A 71 U A 72 SITE 1 AC3 3 C A 31 A A 32 GNG A 120 SITE 1 AC4 3 G A 33 G A 34 G A 35 SITE 1 AC5 6 G A 38 C A 39 G A 47 C A 48 SITE 2 AC5 6 A A 66 A A 67 SITE 1 AC6 2 C A 68 U A 72 SITE 1 AC7 2 G A 45 G A 46 SITE 1 AC8 3 U A 63 G A 75 G A 76 SITE 1 AC9 9 A B 30 C B 31 C B 56 C B 57 SITE 2 AC9 9 C B 58 G B 59 C B 80 U B 81 SITE 3 AC9 9 HOH B 307 CRYST1 102.376 35.414 119.269 90.00 95.18 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009768 0.000000 0.000885 0.00000 SCALE2 0.000000 0.028237 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008419 0.00000 HETATM 1 PG GTP A 23 45.096 -7.746 26.172 1.00145.63 P ANISOU 1 PG GTP A 23 17623 20768 16941 -612 1150 2248 P HETATM 2 O1G GTP A 23 46.153 -8.770 26.517 1.00146.04 O ANISOU 2 O1G GTP A 23 17706 20829 16952 -487 1232 2347 O HETATM 3 O2G GTP A 23 44.868 -7.756 24.679 1.00145.26 O ANISOU 3 O2G GTP A 23 17584 20691 16917 -659 1182 2218 O HETATM 4 O3G GTP A 23 45.548 -6.366 26.594 1.00145.11 O ANISOU 4 O3G GTP A 23 17437 20794 16905 -642 1006 2265 O HETATM 5 O3B GTP A 23 43.729 -8.142 26.937 1.00 86.26 O ANISOU 5 O3B GTP A 23 10194 13177 9402 -663 1185 2158 O HETATM 6 PB GTP A 23 43.664 -8.399 28.531 1.00147.80 P ANISOU 6 PB GTP A 23 18016 20979 17162 -624 1179 2172 P HETATM 7 O1B GTP A 23 45.026 -8.814 29.034 1.00147.89 O ANISOU 7 O1B GTP A 23 18002 21043 17148 -506 1195 2288 O HETATM 8 O2B GTP A 23 42.627 -9.454 28.841 1.00147.43 O ANISOU 8 O2B GTP A 23 18099 20841 17078 -644 1286 2111 O HETATM 9 O3A GTP A 23 43.262 -6.989 29.207 1.00220.02 O ANISOU 9 O3A GTP A 23 27072 30185 26341 -696 1036 2123 O HETATM 10 PA GTP A 23 41.713 -6.553 29.338 1.00161.59 P ANISOU 10 PA GTP A 23 19700 22744 18954 -801 1008 1999 P HETATM 11 O1A GTP A 23 40.947 -7.013 28.119 1.00162.69 O ANISOU 11 O1A GTP A 23 19895 22821 19098 -852 1081 1940 O HETATM 12 O2A GTP A 23 41.592 -5.059 29.531 1.00159.30 O ANISOU 12 O2A GTP A 23 19310 22512 18704 -859 868 1968 O HETATM 13 O5' GTP A 23 41.152 -7.340 30.630 1.00123.30 O ANISOU 13 O5' GTP A 23 14933 17859 14057 -785 1064 1977 O HETATM 14 C5' GTP A 23 40.089 -6.793 31.379 1.00122.38 C ANISOU 14 C5' GTP A 23 14814 17743 13942 -855 1012 1890 C HETATM 15 C4' GTP A 23 40.550 -6.236 32.720 1.00122.45 C ANISOU 15 C4' GTP A 23 14771 17813 13943 -827 932 1923 C HETATM 16 O4' GTP A 23 41.944 -6.046 32.783 1.00121.33 O ANISOU 16 O4' GTP A 23 14565 17732 13804 -754 897 2028 O HETATM 17 C3' GTP A 23 40.014 -4.838 32.947 1.00123.18 C ANISOU 17 C3' GTP A 23 14785 17945 14073 -900 808 1857 C HETATM 18 O3' GTP A 23 38.686 -4.869 33.414 1.00125.42 O ANISOU 18 O3' GTP A 23 15113 18196 14345 -962 819 1756 O HETATM 19 C2' GTP A 23 40.945 -4.211 33.974 1.00121.27 C ANISOU 19 C2' GTP A 23 14474 17777 13827 -863 725 1920 C HETATM 20 O2' GTP A 23 40.516 -4.567 35.268 1.00122.40 O ANISOU 20 O2' GTP A 23 14658 17917 13931 -858 740 1898 O HETATM 21 C1' GTP A 23 42.240 -4.957 33.645 1.00117.97 C ANISOU 21 C1' GTP A 23 14055 17378 13390 -772 781 2034 C HETATM 22 N9 GTP A 23 43.162 -4.006 32.990 1.00110.53 N ANISOU 22 N9 GTP A 23 13013 16499 12483 -774 697 2081 N HETATM 23 C8 GTP A 23 43.918 -4.248 31.873 1.00108.46 C ANISOU 23 C8 GTP A 23 12733 16243 12233 -740 730 2138 C HETATM 24 N7 GTP A 23 44.631 -3.135 31.587 1.00106.32 N ANISOU 24 N7 GTP A 23 12364 16041 11990 -763 629 2168 N HETATM 25 C5 GTP A 23 44.353 -2.187 32.509 1.00103.92 C ANISOU 25 C5 GTP A 23 12020 15770 11693 -811 535 2130 C HETATM 26 C6 GTP A 23 44.810 -0.882 32.681 1.00 99.83 C ANISOU 26 C6 GTP A 23 11416 15316 11197 -856 417 2136 C HETATM 27 O6 GTP A 23 45.625 -0.401 31.898 1.00 97.94 O ANISOU 27 O6 GTP A 23 11118 15120 10976 -860 382 2184 O HETATM 28 N1 GTP A 23 44.348 -0.129 33.739 1.00 98.82 N ANISOU 28 N1 GTP A 23 11274 15204 11068 -900 343 2086 N HETATM 29 C2 GTP A 23 43.434 -0.682 34.616 1.00101.06 C ANISOU 29 C2 GTP A 23 11622 15446 11329 -898 385 2032 C HETATM 30 N2 GTP A 23 42.975 0.035 35.637 1.00101.04 N ANISOU 30 N2 GTP A 23 11607 15461 11324 -940 317 1981 N HETATM 31 N3 GTP A 23 42.984 -1.977 34.438 1.00102.68 N ANISOU 31 N3 GTP A 23 11912 15591 11511 -857 501 2028 N HETATM 32 C4 GTP A 23 43.434 -2.722 33.401 1.00105.32 C ANISOU 32 C4 GTP A 23 12268 15904 11846 -815 576 2076 C