HEADER HYDROLASE/HYDROLASE INHIBITOR 23-JUN-11 3SL0 TITLE CRYSTAL STRUCTURE OF P. FALCIPARUM ARGINASE COMPLEXED WITH 2-AMINO-6- TITLE 2 BORONO-2-(DIFLUOROMETHYL)HEXANOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-411; COMPND 5 EC: 3.5.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PFI0320W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUSTM(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS METALLOHYDROLASE, ARGINASE FOLD, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.P.DOWLING,M.ILIES,D.W.CHRISTIANSON REVDAT 3 13-SEP-23 3SL0 1 REMARK REVDAT 2 26-JUL-23 3SL0 1 JRNL REMARK SEQADV LINK REVDAT 1 20-JUL-11 3SL0 0 JRNL AUTH M.ILIES,L.DI COSTANZO,D.P.DOWLING,K.J.THORN,D.W.CHRISTIANSON JRNL TITL BINDING OF ALPHA , ALPHA-DISUBSTITUTED AMINO ACIDS TO JRNL TITL 2 ARGINASE SUGGESTS NEW AVENUES FOR INHIBITOR DESIGN. JRNL REF J.MED.CHEM. V. 54 5432 2011 JRNL REFN ISSN 0022-2623 JRNL PMID 21728378 JRNL DOI 10.1021/JM200443B REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2466 - 4.8107 1.00 2782 123 0.1686 0.1635 REMARK 3 2 4.8107 - 3.8197 1.00 2674 132 0.1398 0.1594 REMARK 3 3 3.8197 - 3.3372 1.00 2623 140 0.1640 0.1717 REMARK 3 4 3.3372 - 3.0322 1.00 2621 140 0.1785 0.1818 REMARK 3 5 3.0322 - 2.8150 1.00 2622 123 0.1742 0.1811 REMARK 3 6 2.8150 - 2.6490 1.00 2605 144 0.1692 0.1983 REMARK 3 7 2.6490 - 2.5164 1.00 2586 144 0.1577 0.1660 REMARK 3 8 2.5164 - 2.4069 1.00 2600 148 0.1562 0.2210 REMARK 3 9 2.4069 - 2.3142 1.00 2614 122 0.1656 0.1738 REMARK 3 10 2.3142 - 2.2344 1.00 2613 126 0.1529 0.1924 REMARK 3 11 2.2344 - 2.1645 1.00 2566 147 0.1681 0.1845 REMARK 3 12 2.1645 - 2.1027 1.00 2588 128 0.1935 0.2233 REMARK 3 13 2.1027 - 2.0473 1.00 2548 160 0.2275 0.2474 REMARK 3 14 2.0473 - 1.9974 0.97 2516 143 0.2563 0.2964 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 39.57 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.63630 REMARK 3 B22 (A**2) : 3.63630 REMARK 3 B33 (A**2) : -7.27270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2512 REMARK 3 ANGLE : 0.922 3413 REMARK 3 CHIRALITY : 0.070 391 REMARK 3 PLANARITY : 0.003 437 REMARK 3 DIHEDRAL : 12.530 957 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 22:71 REMARK 3 ORIGIN FOR THE GROUP (A): 57.0813 -2.9962 26.6539 REMARK 3 T TENSOR REMARK 3 T11: 0.3431 T22: 0.0421 REMARK 3 T33: 0.1390 T12: -0.0584 REMARK 3 T13: -0.0641 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 5.3917 L22: 4.4900 REMARK 3 L33: 2.9446 L12: 0.1944 REMARK 3 L13: -0.6324 L23: -0.4838 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: -0.1986 S13: 0.1477 REMARK 3 S21: 0.2819 S22: -0.0337 S23: -0.0675 REMARK 3 S31: -0.6284 S32: -0.2634 S33: -0.0332 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 154:185 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4995 2.3946 21.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.4307 T22: 0.2498 REMARK 3 T33: 0.2679 T12: 0.1715 REMARK 3 T13: 0.0179 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 6.9588 L22: 2.1854 REMARK 3 L33: 1.4267 L12: 0.3460 REMARK 3 L13: -1.1400 L23: 0.0752 REMARK 3 S TENSOR REMARK 3 S11: 0.1020 S12: -0.1649 S13: 0.5347 REMARK 3 S21: 0.2216 S22: -0.0208 S23: 0.3415 REMARK 3 S31: -0.8118 S32: -0.3843 S33: -0.0095 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 186:280 REMARK 3 ORIGIN FOR THE GROUP (A): 38.9486 -7.5638 15.9894 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.2329 REMARK 3 T33: 0.2462 T12: 0.1110 REMARK 3 T13: 0.0004 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 1.0880 L22: 2.5985 REMARK 3 L33: 1.8997 L12: -0.0913 REMARK 3 L13: 0.1461 L23: -0.1250 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.0407 S13: 0.1422 REMARK 3 S21: -0.0110 S22: 0.0556 S23: 0.4357 REMARK 3 S31: -0.4187 S32: -0.5201 S33: -0.0641 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 281:309 REMARK 3 ORIGIN FOR THE GROUP (A): 46.0280 -22.1076 6.9074 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.1194 REMARK 3 T33: 0.1269 T12: -0.0313 REMARK 3 T13: -0.0495 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 6.6101 L22: 5.5427 REMARK 3 L33: 4.1165 L12: -1.9795 REMARK 3 L13: 0.5837 L23: -0.1805 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: 0.1858 S13: -0.2449 REMARK 3 S21: -0.4696 S22: 0.0718 S23: 0.1927 REMARK 3 S31: 0.1431 S32: -0.2622 S33: -0.0457 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 310:374 REMARK 3 ORIGIN FOR THE GROUP (A): 53.3731 -15.5364 17.3980 REMARK 3 T TENSOR REMARK 3 T11: 0.1858 T22: 0.1164 REMARK 3 T33: 0.1741 T12: -0.0005 REMARK 3 T13: -0.0113 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.9207 L22: 1.9480 REMARK 3 L33: 2.6830 L12: 0.2222 REMARK 3 L13: -0.0439 L23: -0.2211 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: -0.0246 S13: -0.0394 REMARK 3 S21: 0.0089 S22: -0.0283 S23: -0.0872 REMARK 3 S31: -0.1759 S32: -0.0096 S33: -0.0023 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESID 375:411 REMARK 3 ORIGIN FOR THE GROUP (A): 64.9082 -16.4271 25.6793 REMARK 3 T TENSOR REMARK 3 T11: 0.2172 T22: 0.1929 REMARK 3 T33: 0.2949 T12: -0.0598 REMARK 3 T13: -0.0489 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 4.5760 L22: 2.0662 REMARK 3 L33: 5.7554 L12: -1.1401 REMARK 3 L13: -1.4459 L23: 1.0897 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: -0.4099 S13: -0.3682 REMARK 3 S21: 0.1593 S22: 0.0444 S23: -0.5584 REMARK 3 S31: 0.0182 S32: 0.7686 S33: 0.0110 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38494 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.997 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58700 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MMR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M NA/K PHOSPHATE (8.0), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 56.47950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.60845 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 76.58667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 56.47950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.60845 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 76.58667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 56.47950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.60845 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 76.58667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 56.47950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.60845 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 76.58667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 56.47950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.60845 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 76.58667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 56.47950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.60845 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 76.58667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.21691 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 153.17333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 65.21691 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 153.17333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 65.21691 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 153.17333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 65.21691 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 153.17333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 65.21691 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 153.17333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 65.21691 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 153.17333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 56.47950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -97.82536 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 112.95900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 56.47950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -97.82536 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 112.95900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 112.95900 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -65.21691 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 76.58667 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 -65.21691 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 76.58667 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 56.47950 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 32.60845 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 76.58667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 482 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 528 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 578 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 ARG A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 HIS A 18 REMARK 465 MET A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 GLY A 72 REMARK 465 ASP A 73 REMARK 465 ASN A 74 REMARK 465 GLU A 75 REMARK 465 MET A 76 REMARK 465 LYS A 77 REMARK 465 GLN A 78 REMARK 465 GLU A 79 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 465 THR A 82 REMARK 465 ASN A 83 REMARK 465 ASN A 84 REMARK 465 TYR A 85 REMARK 465 ILE A 86 REMARK 465 ASN A 87 REMARK 465 ASN A 88 REMARK 465 ASN A 89 REMARK 465 ASP A 90 REMARK 465 ASN A 91 REMARK 465 ASN A 92 REMARK 465 ASN A 93 REMARK 465 ASP A 94 REMARK 465 ASN A 95 REMARK 465 ASN A 96 REMARK 465 ASN A 97 REMARK 465 ASP A 98 REMARK 465 ASN A 99 REMARK 465 ASN A 100 REMARK 465 ASN A 101 REMARK 465 ASP A 102 REMARK 465 ASN A 103 REMARK 465 ASN A 104 REMARK 465 ASN A 105 REMARK 465 ASN A 106 REMARK 465 CYS A 107 REMARK 465 TYR A 108 REMARK 465 ILE A 109 REMARK 465 PRO A 110 REMARK 465 ASN A 111 REMARK 465 GLY A 112 REMARK 465 VAL A 113 REMARK 465 ILE A 114 REMARK 465 LYS A 115 REMARK 465 GLU A 116 REMARK 465 LYS A 117 REMARK 465 LYS A 118 REMARK 465 HIS A 119 REMARK 465 ASP A 120 REMARK 465 LEU A 121 REMARK 465 SER A 122 REMARK 465 ASN A 123 REMARK 465 ASN A 124 REMARK 465 LYS A 125 REMARK 465 MET A 126 REMARK 465 ASN A 127 REMARK 465 GLY A 128 REMARK 465 TYR A 129 REMARK 465 VAL A 130 REMARK 465 ASN A 131 REMARK 465 HIS A 132 REMARK 465 ASN A 133 REMARK 465 PHE A 134 REMARK 465 TYR A 135 REMARK 465 GLY A 136 REMARK 465 ASN A 137 REMARK 465 TYR A 138 REMARK 465 GLU A 139 REMARK 465 GLU A 140 REMARK 465 ASN A 141 REMARK 465 ASN A 142 REMARK 465 VAL A 143 REMARK 465 ILE A 144 REMARK 465 SER A 145 REMARK 465 THR A 146 REMARK 465 ASN A 147 REMARK 465 ASP A 148 REMARK 465 LYS A 149 REMARK 465 TYR A 150 REMARK 465 LYS A 151 REMARK 465 ASN A 152 REMARK 465 ASN A 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 271 -13.37 -158.18 REMARK 500 ASP A 377 -63.90 -91.83 REMARK 500 LYS A 378 -135.38 -133.69 REMARK 500 LYS A 379 112.01 -18.57 REMARK 500 PRO A 386 60.28 -69.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 413 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 193 ND1 REMARK 620 2 ASP A 216 OD1 94.5 REMARK 620 3 ASP A 220 OD2 90.4 86.3 REMARK 620 4 ASP A 323 OD2 106.2 87.4 162.7 REMARK 620 5 FB5 A 414 O1 170.4 93.5 84.7 79.6 REMARK 620 6 HOH A 598 O 106.9 158.5 91.4 88.5 65.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 412 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 216 OD2 REMARK 620 2 HIS A 218 ND1 95.0 REMARK 620 3 ASP A 323 OD2 89.0 172.8 REMARK 620 4 ASP A 325 OD2 137.6 92.9 88.3 REMARK 620 5 ASP A 325 OD1 82.6 98.2 88.3 55.0 REMARK 620 6 FB5 A 414 O1 94.5 92.0 81.7 126.9 169.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FB5 A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MMR RELATED DB: PDB REMARK 900 P. FALCIPARUM ARGINASE COMPLEXED WITH ABH REMARK 900 RELATED ID: 3SL1 RELATED DB: PDB REMARK 900 P. FALCIPARUM ARGINASE COMPLEXED WITH 2-AMINO-6-BORONO-2- REMARK 900 METHYLHEXANOIC ACID REMARK 900 RELATED ID: 3SJT RELATED DB: PDB REMARK 900 HUMAN ARGINASE I IN COMPLEX WITH THE INHIBITOR ME-ABH REMARK 900 RELATED ID: 3SKK RELATED DB: PDB REMARK 900 HUMAN ARGINASE I IN COMPLEX WITH THE INHIBITOR FABH REMARK 900 RELATED ID: 3GMZ RELATED DB: PDB REMARK 900 HUMAN ARGINASE IN COMPLEX WITH L-ORNITHINE REMARK 900 RELATED ID: 3GN0 RELATED DB: PDB REMARK 900 HUMAN ARGINASE I IN COMPLEX WITH DIFLUOROMETHYLORNITHINE (DFMO) DBREF 3SL0 A 22 411 UNP Q8I384 Q8I384_PLAF7 22 411 SEQADV 3SL0 MET A -1 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 GLY A 0 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 SER A 1 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 SER A 2 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 HIS A 3 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 HIS A 4 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 HIS A 5 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 HIS A 6 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 HIS A 7 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 HIS A 8 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 SER A 9 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 SER A 10 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 GLY A 11 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 LEU A 12 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 VAL A 13 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 PRO A 14 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 ARG A 15 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 GLY A 16 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 SER A 17 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 HIS A 18 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 MET A 19 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 ALA A 20 UNP Q8I384 EXPRESSION TAG SEQADV 3SL0 SER A 21 UNP Q8I384 EXPRESSION TAG SEQRES 1 A 413 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 413 LEU VAL PRO ARG GLY SER HIS MET ALA SER LYS ASN VAL SEQRES 3 A 413 SER ILE ILE GLY SER PRO LEU ALA ALA GLY GLN PRO LEU SEQRES 4 A 413 GLY GLY VAL GLN LEU ALA CYS ASP ASP LEU ARG LYS LEU SEQRES 5 A 413 GLY LEU HIS ASN VAL ILE ASP VAL LEU GLY TRP LYS TYR SEQRES 6 A 413 GLU ASP ILE GLY ASN ILE ASP ASN GLY ASP ASN GLU MET SEQRES 7 A 413 LYS GLN GLU LYS LYS THR ASN ASN TYR ILE ASN ASN ASN SEQRES 8 A 413 ASP ASN ASN ASN ASP ASN ASN ASN ASP ASN ASN ASN ASP SEQRES 9 A 413 ASN ASN ASN ASN CYS TYR ILE PRO ASN GLY VAL ILE LYS SEQRES 10 A 413 GLU LYS LYS HIS ASP LEU SER ASN ASN LYS MET ASN GLY SEQRES 11 A 413 TYR VAL ASN HIS ASN PHE TYR GLY ASN TYR GLU GLU ASN SEQRES 12 A 413 ASN VAL ILE SER THR ASN ASP LYS TYR LYS ASN ASN CYS SEQRES 13 A 413 TYR TYR ASP ASN ILE ARG ASN ILE LYS GLU ILE GLY ILE SEQRES 14 A 413 PHE SER LYS ASN LEU PHE ASP THR MET SER ASN GLU LEU SEQRES 15 A 413 ARG LYS LYS ASN PHE VAL LEU ASN ILE GLY GLY ASP HIS SEQRES 16 A 413 GLY VAL ALA PHE SER SER ILE LEU SER SER LEU GLN MET SEQRES 17 A 413 TYR GLN ASN LEU ARG VAL ILE TRP ILE ASP ALA HIS GLY SEQRES 18 A 413 ASP ILE ASN ILE PRO GLU THR SER PRO SER GLY ASN TYR SEQRES 19 A 413 HIS GLY MET THR LEU ALA HIS THR LEU GLY LEU PHE LYS SEQRES 20 A 413 LYS LYS VAL PRO TYR PHE GLU TRP SER GLU ASN LEU THR SEQRES 21 A 413 TYR LEU LYS PRO GLU ASN THR ALA ILE ILE GLY ILE ARG SEQRES 22 A 413 ASP ILE ASP ALA TYR GLU LYS ILE ILE LEU LYS LYS CYS SEQRES 23 A 413 ASN ILE ASN TYR TYR THR ILE PHE ASP ILE GLU LYS ASN SEQRES 24 A 413 GLY ILE TYR ASN THR ILE CYS THR ALA LEU GLU LYS ILE SEQRES 25 A 413 ASP PRO ASN SER ASN CYS PRO ILE HIS ILE SER LEU ASP SEQRES 26 A 413 ILE ASP SER VAL ASP ASN VAL PHE ALA PRO GLY THR GLY SEQRES 27 A 413 THR VAL ALA LYS GLY GLY LEU ASN TYR ARG GLU ILE ASN SEQRES 28 A 413 LEU LEU MET LYS ILE LEU ALA GLU THR LYS ARG VAL VAL SEQRES 29 A 413 SER MET ASP LEU VAL GLU TYR ASN PRO SER LEU ASP GLU SEQRES 30 A 413 VAL ASP LYS LYS VAL HIS GLY ASP SER LEU PRO ILE LEU SEQRES 31 A 413 ASP ASN ALA THR LYS THR GLY LYS LEU CYS LEU GLU LEU SEQRES 32 A 413 ILE ALA ARG VAL LEU GLY TYR ASP ILE VAL HET MN A 412 1 HET MN A 413 1 HET FB5 A 414 15 HETNAM MN MANGANESE (II) ION HETNAM FB5 2-(DIFLUOROMETHYL)-6-(DIHYDROXYBORANYL)-L-NORLEUCINE FORMUL 2 MN 2(MN 2+) FORMUL 4 FB5 C7 H14 B F2 N O4 FORMUL 5 HOH *203(H2 O) HELIX 1 1 GLY A 39 GLN A 41 5 3 HELIX 2 2 LEU A 42 GLY A 51 1 10 HELIX 3 3 GLY A 51 LEU A 59 1 9 HELIX 4 4 ASN A 161 ARG A 181 1 21 HELIX 5 5 ASP A 192 GLY A 194 5 3 HELIX 6 6 VAL A 195 TYR A 207 1 13 HELIX 7 7 ASN A 231 GLY A 234 5 4 HELIX 8 8 MET A 235 LEU A 241 1 7 HELIX 9 9 PHE A 251 GLU A 255 5 5 HELIX 10 10 LYS A 261 GLU A 263 5 3 HELIX 11 11 ASP A 274 CYS A 284 1 11 HELIX 12 12 ILE A 291 GLY A 298 1 8 HELIX 13 13 GLY A 298 ASP A 311 1 14 HELIX 14 14 ASP A 325 VAL A 327 5 3 HELIX 15 15 ASN A 344 THR A 358 1 15 HELIX 16 16 ASN A 370 ASP A 374 5 5 HELIX 17 17 THR A 392 LEU A 406 1 15 SHEET 1 A 8 LYS A 62 ASN A 68 0 SHEET 2 A 8 ASN A 23 SER A 29 1 N GLY A 28 O GLY A 67 SHEET 3 A 8 PHE A 185 GLY A 190 1 O ILE A 189 N SER A 29 SHEET 4 A 8 VAL A 361 VAL A 367 1 O MET A 364 N ASN A 188 SHEET 5 A 8 ILE A 318 ASP A 323 1 N ILE A 320 O ASP A 365 SHEET 6 A 8 ARG A 211 ILE A 215 1 N ARG A 211 O HIS A 319 SHEET 7 A 8 THR A 265 ILE A 270 1 O ALA A 266 N TRP A 214 SHEET 8 A 8 ASN A 287 THR A 290 1 O ASN A 287 N ILE A 267 LINK ND1 HIS A 193 MN MN A 413 1555 1555 2.20 LINK OD2 ASP A 216 MN MN A 412 1555 1555 2.23 LINK OD1 ASP A 216 MN MN A 413 1555 1555 2.17 LINK ND1 HIS A 218 MN MN A 412 1555 1555 2.27 LINK OD2 ASP A 220 MN MN A 413 1555 1555 2.18 LINK OD2 ASP A 323 MN MN A 412 1555 1555 2.25 LINK OD2 ASP A 323 MN MN A 413 1555 1555 2.36 LINK OD2 ASP A 325 MN MN A 412 1555 1555 2.29 LINK OD1 ASP A 325 MN MN A 412 1555 1555 2.47 LINK MN MN A 412 O1 FB5 A 414 1555 1555 2.26 LINK MN MN A 413 O1 FB5 A 414 1555 1555 2.25 LINK MN MN A 413 O HOH A 598 1555 1555 2.36 CISPEP 1 GLY A 190 GLY A 191 0 4.86 CISPEP 2 ASP A 377 LYS A 378 0 -11.26 SITE 1 AC1 6 ASP A 216 HIS A 218 ASP A 323 ASP A 325 SITE 2 AC1 6 MN A 413 FB5 A 414 SITE 1 AC2 7 HIS A 193 ASP A 216 ASP A 220 ASP A 323 SITE 2 AC2 7 MN A 412 FB5 A 414 HOH A 598 SITE 1 AC3 19 ASP A 216 HIS A 218 ASP A 220 ASN A 222 SITE 2 AC3 19 SER A 229 HIS A 233 GLY A 234 ASP A 274 SITE 3 AC3 19 ASP A 323 ASP A 325 GLU A 368 HIS A 381 SITE 4 AC3 19 MN A 412 MN A 413 HOH A 436 HOH A 479 SITE 5 AC3 19 HOH A 508 HOH A 511 HOH A 598 CRYST1 112.959 112.959 229.760 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008853 0.005111 0.000000 0.00000 SCALE2 0.000000 0.010222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004352 0.00000