HEADER TRANSFERASE 28-JUN-11 3SMS TITLE HUMAN PANTOTHENATE KINASE 3 IN COMPLEX WITH A PANTOTHENATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOTHENATE KINASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 10-370; COMPND 5 SYNONYM: HPANK3, PANTOTHENIC ACID KINASE 3; COMPND 6 EC: 2.7.1.33; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PANK3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MOTTAGHI,W.TEMPEL,B.HONG,D.SMIL,Y.BOLSHAN,A.K.WERNIMONT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,H.PARK,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 3 13-SEP-23 3SMS 1 REMARK SEQADV REVDAT 2 20-JUL-11 3SMS 1 AUTHOR JRNL REVDAT 1 13-JUL-11 3SMS 0 JRNL AUTH K.MOTTAGHI,W.TEMPEL,B.HONG,D.SMIL,Y.BOLSHAN,A.K.WERNIMONT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,H.PARK JRNL TITL HUMAN PANTOTHENATE KINASE 3 IN COMPLEX WITH A PANTOTHENATE JRNL TITL 2 ANALOG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1044 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1422 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -1.13000 REMARK 3 B12 (A**2) : 0.38000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.632 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2856 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1939 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3870 ; 1.418 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4686 ; 0.904 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 5.945 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;33.969 ;23.388 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;13.678 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.146 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 431 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3167 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 611 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1749 ; 0.601 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 731 ; 0.135 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2804 ; 1.129 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1107 ; 1.765 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1064 ; 2.772 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 368 REMARK 3 RESIDUE RANGE : A 375 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2802 7.6218 5.0330 REMARK 3 T TENSOR REMARK 3 T11: 0.0590 T22: 0.0323 REMARK 3 T33: 0.0185 T12: 0.0038 REMARK 3 T13: -0.0001 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.7948 L22: 1.9500 REMARK 3 L33: 1.4940 L12: 0.1474 REMARK 3 L13: 0.2160 L23: 0.8499 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: -0.0719 S13: 0.0842 REMARK 3 S21: 0.2824 S22: -0.0045 S23: -0.0292 REMARK 3 S31: 0.0814 S32: 0.1049 S33: 0.0219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: WITH TLS ADDED. ARP/WARP, COOT AND THE REMARK 3 MOLPROBITY SERVER WERE ALSO USED DURING REFINEMENT. N- REMARK 3 HEPTYLPANTOTHENAMIDE RESTRAINTS WERE OBTAINED ON THE PRODRG REMARK 3 SERVER. REMARK 4 REMARK 4 3SMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20590 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2I7P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2 M LITHIUM SULFATE, REMARK 280 0.1 M HEPES, 0.005 M OF EACH OF ATP, MAGNESIUM CHLORIDE AND N- REMARK 280 HEPTYLPANTOTHENAMIDE WERE ALSO ADDED, PH 7.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.20667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.41333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.41333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.20667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -23.20667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 LYS A 102 REMARK 465 ASN A 103 REMARK 465 PHE A 104 REMARK 465 SER A 105 REMARK 465 THR A 106 REMARK 465 LEU A 107 REMARK 465 GLN A 108 REMARK 465 PHE A 369 REMARK 465 SER A 370 REMARK 465 ASP A 371 REMARK 465 ASP A 372 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 46 CE NZ REMARK 470 LYS A 50 CD CE NZ REMARK 470 ARG A 79 CZ NH1 NH2 REMARK 470 ASN A 130 CG OD1 ND2 REMARK 470 HIS A 132 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 157 CD OE1 NE2 REMARK 470 GLU A 170 CD OE1 OE2 REMARK 470 LYS A 206 CD CE NZ REMARK 470 LYS A 278 NZ REMARK 470 LYS A 347 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 172 CB CYS A 172 SG -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 40 -23.21 -38.24 REMARK 500 ASN A 130 55.84 -112.82 REMARK 500 SER A 153 162.78 78.06 REMARK 500 PRO A 182 51.46 -98.89 REMARK 500 GLU A 354 -103.33 62.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 373 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RNH A 374 DBREF 3SMS A 10 370 UNP Q9H999 PANK3_HUMAN 10 370 SEQADV 3SMS MET A -9 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS GLY A -8 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS SER A -7 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS SER A -6 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS HIS A -5 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS HIS A -4 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS HIS A -3 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS HIS A -2 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS HIS A -1 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS HIS A 0 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS SER A 1 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS SER A 2 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS GLY A 3 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS LEU A 4 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS VAL A 5 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS PRO A 6 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS ARG A 7 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS GLY A 8 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS SER A 9 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS ASP A 371 UNP Q9H999 EXPRESSION TAG SEQADV 3SMS ASP A 372 UNP Q9H999 EXPRESSION TAG SEQRES 1 A 382 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 382 LEU VAL PRO ARG GLY SER SER PHE PRO TRP PHE GLY MET SEQRES 3 A 382 ASP ILE GLY GLY THR LEU VAL LYS LEU SER TYR PHE GLU SEQRES 4 A 382 PRO ILE ASP ILE THR ALA GLU GLU GLU GLN GLU GLU VAL SEQRES 5 A 382 GLU SER LEU LYS SER ILE ARG LYS TYR LEU THR SER ASN SEQRES 6 A 382 VAL ALA TYR GLY SER THR GLY ILE ARG ASP VAL HIS LEU SEQRES 7 A 382 GLU LEU LYS ASP LEU THR LEU PHE GLY ARG ARG GLY ASN SEQRES 8 A 382 LEU HIS PHE ILE ARG PHE PRO THR GLN ASP LEU PRO THR SEQRES 9 A 382 PHE ILE GLN MET GLY ARG ASP LYS ASN PHE SER THR LEU SEQRES 10 A 382 GLN THR VAL LEU CYS ALA THR GLY GLY GLY ALA TYR LYS SEQRES 11 A 382 PHE GLU LYS ASP PHE ARG THR ILE GLY ASN LEU HIS LEU SEQRES 12 A 382 HIS LYS LEU ASP GLU LEU ASP CYS LEU VAL LYS GLY LEU SEQRES 13 A 382 LEU TYR ILE ASP SER VAL SER PHE ASN GLY GLN ALA GLU SEQRES 14 A 382 CYS TYR TYR PHE ALA ASN ALA SER GLU PRO GLU ARG CYS SEQRES 15 A 382 GLN LYS MET PRO PHE ASN LEU ASP ASP PRO TYR PRO LEU SEQRES 16 A 382 LEU VAL VAL ASN ILE GLY SER GLY VAL SER ILE LEU ALA SEQRES 17 A 382 VAL HIS SER LYS ASP ASN TYR LYS ARG VAL THR GLY THR SEQRES 18 A 382 SER LEU GLY GLY GLY THR PHE LEU GLY LEU CYS SER LEU SEQRES 19 A 382 LEU THR GLY CYS GLU SER PHE GLU GLU ALA LEU GLU MET SEQRES 20 A 382 ALA SER LYS GLY ASP SER THR GLN ALA ASP LYS LEU VAL SEQRES 21 A 382 ARG ASP ILE TYR GLY GLY ASP TYR GLU ARG PHE GLY LEU SEQRES 22 A 382 PRO GLY TRP ALA VAL ALA SER SER PHE GLY ASN MET ILE SEQRES 23 A 382 TYR LYS GLU LYS ARG GLU SER VAL SER LYS GLU ASP LEU SEQRES 24 A 382 ALA ARG ALA THR LEU VAL THR ILE THR ASN ASN ILE GLY SEQRES 25 A 382 SER VAL ALA ARG MET CYS ALA VAL ASN GLU LYS ILE ASN SEQRES 26 A 382 ARG VAL VAL PHE VAL GLY ASN PHE LEU ARG VAL ASN THR SEQRES 27 A 382 LEU SER MET LYS LEU LEU ALA TYR ALA LEU ASP TYR TRP SEQRES 28 A 382 SER LYS GLY GLN LEU LYS ALA LEU PHE LEU GLU HIS GLU SEQRES 29 A 382 GLY TYR PHE GLY ALA VAL GLY ALA LEU LEU GLY LEU PRO SEQRES 30 A 382 ASN PHE SER ASP ASP HET ADP A 373 27 HET RNH A 374 22 HET UNX A2892 1 HET UNX A2893 1 HET UNX A2894 1 HET UNX A2895 1 HET UNX A2896 1 HET UNX A2897 1 HET UNX A2898 1 HET UNX A2899 1 HET UNX A2900 1 HET UNX A2901 1 HET UNX A2902 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM RNH (2R)-N-[3-(HEPTYLAMINO)-3-OXOPROPYL]-2,4-DIHYDROXY-3,3- HETNAM 2 RNH DIMETHYLBUTANAMIDE HETNAM UNX UNKNOWN ATOM OR ION HETSYN RNH N-HEPTYLPANTOTHENAMIDE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 RNH C16 H32 N2 O4 FORMUL 4 UNX 11(X) FORMUL 15 HOH *129(H2 O) HELIX 1 1 THR A 34 GLU A 41 1 8 HELIX 2 2 VAL A 42 ASN A 55 1 14 HELIX 3 3 VAL A 66 GLU A 69 5 4 HELIX 4 4 ASP A 91 ASP A 101 1 11 HELIX 5 5 GLY A 116 PHE A 121 1 6 HELIX 6 6 PHE A 121 ARG A 126 1 6 HELIX 7 7 ASP A 137 SER A 153 1 17 HELIX 8 8 GLY A 214 GLY A 227 1 14 HELIX 9 9 SER A 230 LYS A 240 1 11 HELIX 10 10 GLY A 241 ALA A 246 5 6 HELIX 11 11 VAL A 250 GLY A 255 1 6 HELIX 12 12 PHE A 272 ILE A 276 5 5 HELIX 13 13 TYR A 277 VAL A 284 1 8 HELIX 14 14 SER A 285 LYS A 313 1 29 HELIX 15 15 GLY A 321 ARG A 325 5 5 HELIX 16 16 ASN A 327 SER A 342 1 16 HELIX 17 17 TYR A 356 GLY A 365 1 10 SHEET 1 A 4 ALA A 57 TYR A 58 0 SHEET 2 A 4 GLY A 62 ARG A 64 -1 O GLY A 62 N TYR A 58 SHEET 3 A 4 ARG A 78 PRO A 88 -1 O ARG A 86 N ILE A 63 SHEET 4 A 4 LEU A 70 LEU A 75 -1 N LEU A 75 O ARG A 78 SHEET 1 B 7 ALA A 57 TYR A 58 0 SHEET 2 B 7 GLY A 62 ARG A 64 -1 O GLY A 62 N TYR A 58 SHEET 3 B 7 ARG A 78 PRO A 88 -1 O ARG A 86 N ILE A 63 SHEET 4 B 7 LEU A 22 PRO A 30 -1 N VAL A 23 O PHE A 87 SHEET 5 B 7 TRP A 13 ILE A 18 -1 N ASP A 17 O LYS A 24 SHEET 6 B 7 VAL A 110 THR A 114 1 O THR A 114 N MET A 16 SHEET 7 B 7 HIS A 132 LYS A 135 1 O HIS A 134 N LEU A 111 SHEET 1 C 7 GLN A 173 PRO A 176 0 SHEET 2 C 7 CYS A 160 ALA A 164 -1 N TYR A 162 O MET A 175 SHEET 3 C 7 LYS A 347 LEU A 351 -1 O PHE A 350 N TYR A 161 SHEET 4 C 7 ARG A 316 VAL A 320 1 N VAL A 317 O LEU A 349 SHEET 5 C 7 LEU A 185 ILE A 190 1 N LEU A 186 O VAL A 318 SHEET 6 C 7 VAL A 194 VAL A 199 -1 O VAL A 199 N LEU A 185 SHEET 7 C 7 TYR A 205 THR A 211 -1 O THR A 209 N ILE A 196 SHEET 1 D 2 LYS A 248 LEU A 249 0 SHEET 2 D 2 VAL A 268 SER A 270 -1 O SER A 270 N LYS A 248 CISPEP 1 TYR A 183 PRO A 184 0 -8.59 CISPEP 2 TYR A 183 PRO A 184 0 -4.46 SITE 1 AC1 21 GLY A 19 GLY A 20 THR A 21 LEU A 22 SITE 2 AC1 21 LYS A 24 ARG A 86 GLY A 191 SER A 192 SITE 3 AC1 21 GLY A 215 GLY A 216 PHE A 231 GLU A 232 SITE 4 AC1 21 ASN A 322 PHE A 323 ARG A 325 HOH A 379 SITE 5 AC1 21 HOH A 388 HOH A 404 HOH A 423 HOH A 435 SITE 6 AC1 21 HOH A 458 SITE 1 AC2 14 GLU A 138 GLY A 193 VAL A 194 SER A 195 SITE 2 AC2 14 ARG A 207 GLY A 210 THR A 211 VAL A 268 SITE 3 AC2 14 ALA A 269 GLY A 302 ARG A 306 TRP A 341 SITE 4 AC2 14 HOH A 388 HOH A 402 CRYST1 99.630 99.630 69.620 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010037 0.005795 0.000000 0.00000 SCALE2 0.000000 0.011590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014364 0.00000