HEADER HYDROLASE 29-JUN-11 3SNG TITLE X-RAY STRUCTURE OF FULLY GLYCOSYLATED BIFUNCTIONAL NUCLEASE TBN1 FROM TITLE 2 SOLANUM LYCOPERSICUM (TOMATO) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MATURE ENZYME NUCLEASE, UNP RESIDUES 26-302; COMPND 5 EC: 3.1.30.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM LYCOPERSICUM; SOURCE 3 ORGANISM_COMMON: TOMATO; SOURCE 4 ORGANISM_TAXID: 4081; SOURCE 5 STRAIN: CV. RUTGERS; SOURCE 6 GENE: TBN1; SOURCE 7 EXPRESSION_SYSTEM: NICOTIANA BENTHAMIANA; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLV07 KEYWDS MAINLY ALPHA HELICAL, TRINUCLEAR METAL CENTRE, BI-FUNCTIONAL, KEYWDS 2 ENDONUCLEASE, 3'-NUCLEOTIDASE, NUCLEIC ACIDS, MONONUCLEOTIDES, KEYWDS 3 CYTOSOL MEMBRANE ASSOCIATED, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KOVAL,A.STEPANKOVA,P.LIPOVOVA,T.PODZIMEK,J.MATOUSEK,J.DUSKOVA, AUTHOR 2 T.SKALOVA,J.HASEK,J.DOHNALEK REVDAT 7 13-SEP-23 3SNG 1 HETSYN REVDAT 6 29-JUL-20 3SNG 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 31-JAN-18 3SNG 1 JRNL REVDAT 4 08-NOV-17 3SNG 1 REMARK REVDAT 3 20-FEB-13 3SNG 1 JRNL REVDAT 2 30-JAN-13 3SNG 1 JRNL REVDAT 1 04-JUL-12 3SNG 0 JRNL AUTH T.KOVAL,P.LIPOVOVA,T.PODZIMEK,J.MATOUSEK,J.DUSKOVA, JRNL AUTH 2 T.SKALOVA,A.STEPANKOVA,J.HASEK,J.DOHNALEK JRNL TITL PLANT MULTIFUNCTIONAL NUCLEASE TBN1 WITH UNEXPECTED JRNL TITL 2 PHOSPHOLIPASE ACTIVITY: STRUCTURAL STUDY AND JRNL TITL 3 REACTION-MECHANISM ANALYSIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 213 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23385457 JRNL DOI 10.1107/S0907444912043697 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0060 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : CCP4 STEREOCHEMISTRY LIBRARY, VERSION 6.1.3 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : RFREE THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1696 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2150 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 151 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.011 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2395 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1594 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3263 ; 1.569 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3844 ; 0.972 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 266 ; 5.549 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;36.866 ;24.017 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 374 ;14.843 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.612 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2554 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 490 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN GENERATED AND USED REMARK 3 ONLY IN REFINEMENT REMARK 4 REMARK 4 3SNG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : KMC-1, SI(111) REMARK 200 OPTICS : 2 MIRRORS AND A DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23089 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.59700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: COMBINATION OF MAD AND REMARK 200 MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXD, MOLREP, SHELX C REMARK 200 STARTING MODEL: PDB ID 1AK0 WAS USED AS A MODEL FOR REPLACEMENT REMARK 200 INTO INITIAL MAD MAPS. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 1% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.84300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.68600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.68600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.84300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 734 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 293 REMARK 465 GLN A 294 REMARK 465 GLN A 295 REMARK 465 GLU A 296 REMARK 465 ASP A 297 REMARK 465 SER A 298 REMARK 465 VAL A 299 REMARK 465 VAL A 300 REMARK 465 ALA A 301 REMARK 465 THR A 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 185 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 92 3.11 59.88 REMARK 500 ASP A 110 -6.04 73.73 REMARK 500 SER A 132 43.87 -96.41 REMARK 500 LEU A 171 -163.74 -167.12 REMARK 500 PHE A 174 -126.81 40.71 REMARK 500 SER A 178 -166.71 -160.86 REMARK 500 ARG A 186 -40.29 -149.54 REMARK 500 ASN A 229 -178.56 -67.60 REMARK 500 SER A 260 -135.73 -148.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 26 O REMARK 620 2 TRP A 26 N 79.5 REMARK 620 3 HIS A 31 NE2 92.4 112.3 REMARK 620 4 ASP A 151 OD1 167.9 88.7 94.6 REMARK 620 5 HOH A 701 O 97.3 130.9 116.7 88.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 70 OD1 REMARK 620 2 HIS A 85 ND1 81.1 REMARK 620 3 HIS A 147 NE2 84.8 105.7 REMARK 620 4 ASP A 151 OD2 174.6 94.4 99.4 REMARK 620 5 HOH A 701 O 85.2 145.1 104.8 96.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 157 NE2 REMARK 620 2 HIS A 181 NE2 100.4 REMARK 620 3 ASP A 185 OD2 129.1 92.0 REMARK 620 4 ASP A 185 OD1 78.3 93.5 51.5 REMARK 620 5 SO4 A 601 O1 97.7 87.8 132.2 176.0 REMARK 620 N 1 2 3 4 DBREF 3SNG A 26 302 UNP Q0KFV0 Q0KFV0_SOLLC 26 302 SEQRES 1 A 277 TRP SER LYS GLU GLY HIS VAL MET THR CYS ARG ILE ALA SEQRES 2 A 277 GLN GLY LEU LEU ASN ASP GLU ALA ALA HIS ALA VAL LYS SEQRES 3 A 277 MET LEU LEU PRO GLU TYR VAL ASN GLY ASP LEU SER ALA SEQRES 4 A 277 LEU CYS VAL TRP PRO ASP GLN VAL ARG HIS TRP TYR LYS SEQRES 5 A 277 TYR LYS TRP THR SER PRO LEU HIS PHE ILE ASP THR PRO SEQRES 6 A 277 ASP LYS ALA CYS ASN PHE ASP TYR GLU ARG ASP CYS HIS SEQRES 7 A 277 ASP GLN HIS GLY VAL LYS ASP MET CYS VAL ALA GLY ALA SEQRES 8 A 277 ILE GLN ASN PHE THR THR GLN LEU SER HIS TYR ARG GLU SEQRES 9 A 277 GLY THR SER ASP ARG ARG TYR ASN MET THR GLU ALA LEU SEQRES 10 A 277 LEU PHE LEU SER HIS PHE MET GLY ASP ILE HIS GLN PRO SEQRES 11 A 277 MET HIS VAL GLY PHE THR SER ASP ALA GLY GLY ASN SER SEQRES 12 A 277 ILE ASP LEU ARG TRP PHE ARG HIS LYS SER ASN LEU HIS SEQRES 13 A 277 HIS VAL TRP ASP ARG GLU ILE ILE LEU THR ALA ALA LYS SEQRES 14 A 277 ASP TYR TYR ALA LYS ASP ILE ASN LEU LEU GLU GLU ASP SEQRES 15 A 277 ILE GLU GLY ASN PHE THR ASP GLY ILE TRP SER ASP ASP SEQRES 16 A 277 LEU ALA SER TRP ARG GLU CYS GLY ASN VAL PHE SER CYS SEQRES 17 A 277 VAL ASN LYS PHE ALA THR GLU SER ILE ASN ILE ALA CYS SEQRES 18 A 277 LYS TRP GLY TYR LYS GLY VAL GLU ALA GLY GLU THR LEU SEQRES 19 A 277 SER ASP ASP TYR PHE ASN SER ARG LEU PRO ILE VAL MET SEQRES 20 A 277 LYS ARG VAL ALA GLN GLY GLY ILE ARG LEU ALA MET LEU SEQRES 21 A 277 LEU ASN ASN VAL PHE GLY ALA SER GLN GLN GLU ASP SER SEQRES 22 A 277 VAL VAL ALA THR MODRES 3SNG ASN A 119 ASN GLYCOSYLATION SITE MODRES 3SNG ASN A 137 ASN GLYCOSYLATION SITE MODRES 3SNG ASN A 211 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET SO4 A 601 5 HET CL A 602 1 HET BTB A 603 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BTB BIS-TRIS BUFFER FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA 3(C6 H12 O6) FORMUL 3 MAN C6 H12 O6 FORMUL 5 ZN 3(ZN 2+) FORMUL 8 SO4 O4 S 2- FORMUL 9 CL CL 1- FORMUL 10 BTB C8 H19 N O5 FORMUL 11 HOH *140(H2 O) HELIX 1 1 SER A 27 GLY A 40 1 14 HELIX 2 2 ASN A 43 LEU A 54 1 12 HELIX 3 3 PRO A 55 ASN A 59 5 5 HELIX 4 4 ASP A 61 LEU A 65 5 5 HELIX 5 5 VAL A 67 ARG A 73 1 7 HELIX 6 6 HIS A 74 PHE A 86 5 13 HELIX 7 7 ASP A 97 CYS A 102 1 6 HELIX 8 8 CYS A 112 SER A 125 1 14 HELIX 9 9 ASN A 137 GLN A 154 1 18 HELIX 10 10 PRO A 155 GLY A 159 5 5 HELIX 11 11 LEU A 180 ARG A 186 1 7 HELIX 12 12 ARG A 186 ALA A 198 1 13 HELIX 13 13 ASP A 200 ASP A 214 1 15 HELIX 14 14 ASP A 220 GLU A 226 1 7 HELIX 15 15 ASN A 229 TRP A 248 1 20 HELIX 16 16 SER A 260 GLY A 291 1 32 SHEET 1 A 3 HIS A 176 ASN A 179 0 SHEET 2 A 3 ASP A 170 TRP A 173 -1 N TRP A 173 O HIS A 176 SHEET 3 A 3 THR A 258 LEU A 259 1 O LEU A 259 N ARG A 172 SSBOND 1 CYS A 35 CYS A 66 1555 1555 2.06 SSBOND 2 CYS A 94 CYS A 246 1555 1555 2.05 SSBOND 3 CYS A 102 CYS A 112 1555 1555 2.10 SSBOND 4 CYS A 227 CYS A 233 1555 1555 2.06 LINK ND2 ASN A 119 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 137 C1 NAG C 1 1555 1555 1.47 LINK ND2 ASN A 211 C1 NAG D 1 1555 1555 1.47 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O TRP A 26 ZN ZN A 401 1555 1555 2.15 LINK N TRP A 26 ZN ZN A 401 1555 1555 2.16 LINK NE2 HIS A 31 ZN ZN A 401 1555 1555 2.03 LINK OD1 ASP A 70 ZN ZN A 402 1555 1555 2.67 LINK ND1 HIS A 85 ZN ZN A 402 1555 1555 2.05 LINK NE2 HIS A 147 ZN ZN A 402 1555 1555 2.04 LINK OD1 ASP A 151 ZN ZN A 401 1555 1555 2.10 LINK OD2 ASP A 151 ZN ZN A 402 1555 1555 1.97 LINK NE2 HIS A 157 ZN ZN A 403 1555 1555 2.14 LINK NE2 HIS A 181 ZN ZN A 403 1555 1555 2.10 LINK OD2 ASP A 185 ZN ZN A 403 1555 1555 2.11 LINK OD1 ASP A 185 ZN ZN A 403 1555 1555 2.65 LINK ZN ZN A 401 O HOH A 701 1555 1555 1.85 LINK ZN ZN A 402 O HOH A 701 1555 1555 1.93 LINK ZN ZN A 403 O1 SO4 A 601 1555 1555 2.05 CRYST1 101.031 101.031 71.529 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009898 0.005715 0.000000 0.00000 SCALE2 0.000000 0.011429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013980 0.00000