HEADER OXIDOREDUCTASE 06-JUL-11 3SQR TITLE CRYSTAL STRUCTURE OF LACCASE FROM BOTRYTIS ACLADA AT 1.67 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.10.3.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTRYTIS ACLADA; SOURCE 3 ORGANISM_TAXID: 139639; SOURCE 4 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS LACCASE, MULTICOPPER OXIDASE, GLYCOSYLATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.OSIPOV,K.M.POLYAKOV,T.V.TIKHONOVA,P.V.DOROVATOVSKY,R.LUDWIG, AUTHOR 2 R.KITTL,S.V.SHLEEV,V.O.POPOV REVDAT 5 09-OCT-24 3SQR 1 REMARK REVDAT 4 13-SEP-23 3SQR 1 HETSYN REVDAT 3 29-JUL-20 3SQR 1 COMPND REMARK DBREF HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 19-NOV-14 3SQR 1 JRNL REVDAT 1 11-JUL-12 3SQR 0 JRNL AUTH E.OSIPOV,K.POLYAKOV,R.KITTL,S.SHLEEV,P.DOROVATOVSKY, JRNL AUTH 2 T.TIKHONOVA,S.HANN,R.LUDWIG,V.POPOV JRNL TITL EFFECT OF THE L499M MUTATION OF THE ASCOMYCETOUS BOTRYTIS JRNL TITL 2 ACLADA LACCASE ON REDOX POTENTIAL AND CATALYTIC PROPERTIES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2913 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25372682 JRNL DOI 10.1107/S1399004714020380 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 62208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3329 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 229 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4181 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 200 REMARK 3 SOLVENT ATOMS : 445 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 1.53000 REMARK 3 B33 (A**2) : -1.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.065 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4552 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2811 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6252 ; 1.912 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6827 ; 1.422 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 537 ; 7.229 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;34.411 ;24.806 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 606 ;12.497 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.948 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 727 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5014 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 903 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2678 ; 1.085 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1093 ; 0.352 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4349 ; 1.682 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1874 ; 2.551 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1903 ; 3.624 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3 ; 8.762 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3SQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : KURCHATOV SNC REMARK 200 BEAMLINE : K4.4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9815 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65537 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 75.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : 0.03800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.43400 REMARK 200 R SYM FOR SHELL (I) : 0.43400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2Q9O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL 20 MG/ML PROTEIN IN 25 MM SODIUM REMARK 280 ACETATE PH 5.0 + 1 UL PRECIPITATE SOLUTION (1.8 M AMMONIUM REMARK 280 SULFATE), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.83500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.83500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 846 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 959 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 LYS A -35 REMARK 465 TYR A -34 REMARK 465 PHE A -33 REMARK 465 THR A -32 REMARK 465 VAL A -31 REMARK 465 PHE A -30 REMARK 465 THR A -29 REMARK 465 ALA A -28 REMARK 465 LEU A -27 REMARK 465 THR A -26 REMARK 465 ALA A -25 REMARK 465 LEU A -24 REMARK 465 PHE A -23 REMARK 465 ALA A -22 REMARK 465 GLN A -21 REMARK 465 ALA A -20 REMARK 465 SER A -19 REMARK 465 ALA A -18 REMARK 465 SER A -17 REMARK 465 ALA A -16 REMARK 465 ILE A -15 REMARK 465 PRO A -14 REMARK 465 ALA A -13 REMARK 465 VAL A -12 REMARK 465 ARG A -11 REMARK 465 SER A -10 REMARK 465 THR A -9 REMARK 465 LEU A -8 REMARK 465 THR A -7 REMARK 465 PRO A -6 REMARK 465 ARG A -5 REMARK 465 GLN A -4 REMARK 465 ASN A -3 REMARK 465 THR A -2 REMARK 465 THR A -1 REMARK 465 ALA A 0 REMARK 465 THR A 405 REMARK 465 ASN A 406 REMARK 465 ALA A 407 REMARK 465 ASN A 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 GLU A 409 CD OE1 OE2 REMARK 470 GLU A 449 CG CD OE1 OE2 REMARK 470 ALA A 452 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 8 55.74 -159.50 REMARK 500 TRP A 12 50.45 -145.04 REMARK 500 ASP A 45 28.47 -140.05 REMARK 500 SER A 135 -142.83 53.06 REMARK 500 ASP A 236 76.84 -159.72 REMARK 500 ASP A 254 -125.74 43.66 REMARK 500 THR A 362 -103.03 -110.32 REMARK 500 ASN A 458 57.23 38.39 REMARK 500 ARG A 462 -169.21 -170.87 REMARK 500 ASN A 481 80.95 -153.47 REMARK 500 ASP A 539 27.48 -141.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 546 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 89 ND1 REMARK 620 2 HIS A 131 NE2 128.8 REMARK 620 3 HIS A 490 NE2 111.8 113.6 REMARK 620 4 HOH A 811 O 119.4 92.4 77.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 545 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 133 NE2 REMARK 620 2 HIS A 431 NE2 102.9 REMARK 620 3 HIS A 488 NE2 102.0 125.2 REMARK 620 4 HOH A 811 O 85.2 128.6 101.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 544 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 426 ND1 REMARK 620 2 CYS A 489 SG 126.0 REMARK 620 3 HIS A 494 ND1 108.6 125.3 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q9O RELATED DB: PDB REMARK 900 NEAR-ATOMIC RESOLUTION STRUCTURE OF A MELANOCARPUS ALBOMYCES LACCASE DBREF 3SQR A -36 543 PDB 3SQR 3SQR -36 543 SEQRES 1 A 580 MET LYS TYR PHE THR VAL PHE THR ALA LEU THR ALA LEU SEQRES 2 A 580 PHE ALA GLN ALA SER ALA SER ALA ILE PRO ALA VAL ARG SEQRES 3 A 580 SER THR LEU THR PRO ARG GLN ASN THR THR ALA SER CYS SEQRES 4 A 580 ALA ASN SER ALA THR SER ARG SER CYS TRP GLY GLU TYR SEQRES 5 A 580 SER ILE ASP THR ASN TRP TYR ASP VAL THR PRO THR GLY SEQRES 6 A 580 VAL THR ARG GLU TYR TRP LEU SER VAL GLU ASN SER THR SEQRES 7 A 580 ILE THR PRO ASP GLY TYR THR ARG SER ALA MET THR PHE SEQRES 8 A 580 ASN GLY THR VAL PRO GLY PRO ALA ILE ILE ALA ASP TRP SEQRES 9 A 580 GLY ASP ASN LEU ILE ILE HIS VAL THR ASN ASN LEU GLU SEQRES 10 A 580 HIS ASN GLY THR SER ILE HIS TRP HIS GLY ILE ARG GLN SEQRES 11 A 580 LEU GLY SER LEU GLU TYR ASP GLY VAL PRO GLY VAL THR SEQRES 12 A 580 GLN CYS PRO ILE ALA PRO GLY ASP THR LEU THR TYR LYS SEQRES 13 A 580 PHE GLN VAL THR GLN TYR GLY THR THR TRP TYR HIS SER SEQRES 14 A 580 HIS PHE SER LEU GLN TYR GLY ASP GLY LEU PHE GLY PRO SEQRES 15 A 580 LEU ILE ILE ASN GLY PRO ALA THR ALA ASP TYR ASP GLU SEQRES 16 A 580 ASP VAL GLY VAL ILE PHE LEU GLN ASP TRP ALA HIS GLU SEQRES 17 A 580 SER VAL PHE GLU ILE TRP ASP THR ALA ARG LEU GLY ALA SEQRES 18 A 580 PRO PRO ALA LEU GLU ASN THR LEU MET ASN GLY THR ASN SEQRES 19 A 580 THR PHE ASP CYS SER ALA SER THR ASP PRO ASN CYS VAL SEQRES 20 A 580 GLY GLY GLY LYS LYS PHE GLU LEU THR PHE VAL GLU GLY SEQRES 21 A 580 THR LYS TYR ARG LEU ARG LEU ILE ASN VAL GLY ILE ASP SEQRES 22 A 580 SER HIS PHE GLU PHE ALA ILE ASP ASN HIS THR LEU THR SEQRES 23 A 580 VAL ILE ALA ASN ASP LEU VAL PRO ILE VAL PRO TYR THR SEQRES 24 A 580 THR ASP THR LEU LEU ILE GLY ILE GLY GLN ARG TYR ASP SEQRES 25 A 580 VAL ILE VAL GLU ALA ASN ALA ALA ALA ASP ASN TYR TRP SEQRES 26 A 580 ILE ARG GLY ASN TRP GLY THR THR CYS SER THR ASN ASN SEQRES 27 A 580 GLU ALA ALA ASN ALA THR GLY ILE LEU ARG TYR ASP SER SEQRES 28 A 580 SER SER ILE ALA ASN PRO THR SER VAL GLY THR THR PRO SEQRES 29 A 580 ARG GLY THR CYS GLU ASP GLU PRO VAL ALA SER LEU VAL SEQRES 30 A 580 PRO HIS LEU ALA LEU ASP VAL GLY GLY TYR SER LEU VAL SEQRES 31 A 580 ASP GLU GLN VAL SER SER ALA PHE THR ASN TYR PHE THR SEQRES 32 A 580 TRP THR ILE ASN SER SER SER LEU LEU LEU ASP TRP SER SEQRES 33 A 580 SER PRO THR THR LEU LYS ILE PHE ASN ASN GLU THR ILE SEQRES 34 A 580 PHE PRO THR GLU TYR ASN VAL VAL ALA LEU GLU GLN THR SEQRES 35 A 580 ASN ALA ASN GLU GLU TRP VAL VAL TYR VAL ILE GLU ASP SEQRES 36 A 580 LEU THR GLY PHE GLY ILE TRP HIS PRO ILE HIS LEU HIS SEQRES 37 A 580 GLY HIS ASP PHE PHE ILE VAL ALA GLN GLU THR ASP VAL SEQRES 38 A 580 PHE ASN SER ASP GLU SER PRO ALA LYS PHE ASN LEU VAL SEQRES 39 A 580 ASN PRO PRO ARG ARG ASP VAL ALA ALA LEU PRO GLY ASN SEQRES 40 A 580 GLY TYR LEU ALA ILE ALA PHE LYS LEU ASP ASN PRO GLY SEQRES 41 A 580 SER TRP LEU LEU HIS CYS HIS ILE ALA TRP HIS ALA SER SEQRES 42 A 580 GLU GLY LEU ALA MET GLN PHE VAL GLU SER GLN SER SER SEQRES 43 A 580 ILE ALA VAL LYS MET THR ASP THR ALA ILE PHE GLU ASP SEQRES 44 A 580 THR CYS ALA ASN TRP ASN ALA TYR THR PRO THR GLN LEU SEQRES 45 A 580 PHE ALA GLU ASP ASP SER GLY ILE MODRES 3SQR ASN A 39 ASN GLYCOSYLATION SITE MODRES 3SQR ASN A 82 ASN GLYCOSYLATION SITE MODRES 3SQR ASN A 305 ASN GLYCOSYLATION SITE MODRES 3SQR ASN A 370 ASN GLYCOSYLATION SITE MODRES 3SQR ASN A 194 ASN GLYCOSYLATION SITE MODRES 3SQR ASN A 55 ASN GLYCOSYLATION SITE MODRES 3SQR ASN A 389 ASN GLYCOSYLATION SITE MODRES 3SQR SER A 338 SER GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET CU A 544 1 HET CU A 545 1 HET CU A 546 1 HET NAG A 547 14 HET NAG A 548 14 HET NAG A 558 14 HET NAG A 559 14 HET NAG A 560 14 HET MAN A 561 11 HET SO4 A 562 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 9(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 4 CU 3(CU 2+) FORMUL 13 SO4 O4 S 2- FORMUL 14 HOH *445(H2 O) HELIX 1 1 SER A 96 ASP A 100 5 5 HELIX 2 2 LEU A 136 GLY A 141 5 6 HELIX 3 3 SER A 172 ARG A 181 1 10 HELIX 4 4 GLU A 302 ASN A 305 5 4 HELIX 5 5 PRO A 335 LEU A 339 5 5 HELIX 6 6 PRO A 381 ASN A 388 1 8 HELIX 7 7 PRO A 394 TYR A 397 5 4 HELIX 8 8 SER A 450 PHE A 454 5 5 HELIX 9 9 ILE A 491 GLU A 497 1 7 HELIX 10 10 GLN A 507 ILE A 510 5 4 HELIX 11 11 LYS A 513 THR A 531 1 19 HELIX 12 12 PRO A 532 GLN A 534 5 3 SHEET 1 A 2 CYS A 11 TRP A 12 0 SHEET 2 A 2 TYR A 15 SER A 16 -1 O TYR A 15 N TRP A 12 SHEET 1 B 4 ARG A 49 PHE A 54 0 SHEET 2 B 4 THR A 30 ILE A 42 -1 N GLU A 38 O THR A 53 SHEET 3 B 4 ASN A 70 ASN A 77 1 O HIS A 74 N LEU A 35 SHEET 4 B 4 THR A 115 GLN A 121 -1 O PHE A 120 N LEU A 71 SHEET 1 C 4 ILE A 63 ASP A 66 0 SHEET 2 C 4 PHE A 143 ASN A 149 1 O ASN A 149 N ALA A 65 SHEET 3 C 4 GLY A 126 SER A 132 -1 N GLY A 126 O ILE A 148 SHEET 4 C 4 ILE A 86 TRP A 88 -1 N HIS A 87 O HIS A 131 SHEET 1 D 6 ASN A 190 MET A 193 0 SHEET 2 D 6 GLU A 158 TRP A 168 -1 N TRP A 168 O ASN A 190 SHEET 3 D 6 LYS A 225 ASN A 232 1 O ARG A 227 N GLU A 158 SHEET 4 D 6 ARG A 273 GLU A 279 -1 O TYR A 274 N LEU A 230 SHEET 5 D 6 LEU A 248 ASN A 253 -1 N ILE A 251 O ASP A 275 SHEET 6 D 6 VAL A 256 THR A 263 -1 O TYR A 261 N VAL A 250 SHEET 1 E 5 GLU A 217 THR A 219 0 SHEET 2 E 5 THR A 307 ARG A 311 1 O ARG A 311 N LEU A 218 SHEET 3 E 5 ASN A 286 ARG A 290 -1 N TYR A 287 O LEU A 310 SHEET 4 E 5 PHE A 239 ILE A 243 -1 N ALA A 242 O ARG A 290 SHEET 5 E 5 LEU A 266 ILE A 268 -1 O ILE A 268 N PHE A 239 SHEET 1 F 6 PHE A 365 ILE A 369 0 SHEET 2 F 6 TYR A 350 PHE A 361 -1 N ALA A 360 O THR A 366 SHEET 3 F 6 TRP A 411 ASP A 418 1 O GLU A 417 N VAL A 357 SHEET 4 F 6 TYR A 472 LYS A 478 -1 O ILE A 475 N TYR A 414 SHEET 5 F 6 PHE A 435 GLU A 441 -1 N ALA A 439 O ALA A 474 SHEET 6 F 6 ARG A 461 ARG A 462 -1 O ARG A 462 N PHE A 435 SHEET 1 G 5 VAL A 399 LEU A 402 0 SHEET 2 G 5 ALA A 500 GLU A 505 1 O VAL A 504 N LEU A 402 SHEET 3 G 5 GLY A 483 CYS A 489 -1 N GLY A 483 O GLU A 505 SHEET 4 G 5 HIS A 426 LEU A 430 -1 N HIS A 429 O HIS A 488 SHEET 5 G 5 VAL A 464 LEU A 467 -1 O LEU A 467 N HIS A 426 SSBOND 1 CYS A 2 CYS A 11 1555 1555 2.07 SSBOND 2 CYS A 108 CYS A 524 1555 1555 2.01 SSBOND 3 CYS A 201 CYS A 209 1555 1555 2.04 SSBOND 4 CYS A 297 CYS A 331 1555 1555 2.03 LINK ND2 ASN A 39 C1 NAG A 548 1555 1555 1.41 LINK ND2 ASN A 55 C1 NAG A 547 1555 1555 1.45 LINK ND2 ASN A 82 C1 NAG B 1 1555 1555 1.42 LINK ND2 ASN A 194 C1 NAG C 1 1555 1555 1.44 LINK ND2BASN A 305 C1 NAG A 560 1555 1555 1.43 LINK ND2AASN A 305 C1 NAG A 560 1555 1555 1.45 LINK OG SER A 338 C1 MAN A 561 1555 1555 1.46 LINK ND2 ASN A 370 C1 NAG A 558 1555 1555 1.43 LINK ND2 ASN A 389 C1 NAG A 559 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.33 LINK O6 MAN C 4 C1 MAN C 5 1555 1555 1.45 LINK O2 MAN C 5 C1 MAN C 6 1555 1555 1.44 LINK ND1 HIS A 89 CU CU A 546 1555 1555 1.98 LINK NE2 HIS A 131 CU CU A 546 1555 1555 2.00 LINK NE2 HIS A 133 CU CU A 545 1555 1555 2.06 LINK ND1 HIS A 426 CU CU A 544 1555 1555 2.01 LINK NE2 HIS A 431 CU CU A 545 1555 1555 2.00 LINK NE2 HIS A 488 CU CU A 545 1555 1555 1.99 LINK SG CYS A 489 CU CU A 544 1555 1555 2.24 LINK NE2 HIS A 490 CU CU A 546 1555 1555 2.09 LINK ND1 HIS A 494 CU CU A 544 1555 1555 2.02 LINK CU CU A 545 O HOH A 811 1555 1555 2.09 LINK CU CU A 546 O HOH A 811 1555 1555 2.64 CISPEP 1 VAL A 58 PRO A 59 0 -8.82 CRYST1 69.670 113.500 79.910 90.00 108.75 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014353 0.000000 0.004872 0.00000 SCALE2 0.000000 0.008811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013215 0.00000