HEADER HYDROLASE 07-JUL-11 3SRA TITLE STRUCTURE OF PSEUDOMONAS AERUGIONSA PVDQ COVALENTLY ACYLATED WITH TITLE 2 MYRISTIC ACID FROM PVDIQ COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA SUBUNIT (UNP RESIDUES 29-191); COMPND 5 SYNONYM: ACYL-HSL ACYLASE PVDQ SUBUNIT ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT BETA; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: BETA SUBUNIT (UNP RESIDUES 217-762); COMPND 11 SYNONYM: ACYL-HSL ACYLASE PVDQ SUBUNIT BETA; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PVDQ, QSC112, PA2385; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15BTEV; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PED485; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 13 ORGANISM_TAXID: 208964; SOURCE 14 STRAIN: PAO1; SOURCE 15 GENE: PVDQ, QSC112, PA2385; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15BTEV; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PED485 KEYWDS NRPS TAILORING, ACYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.GULICK,E.J.DRAKE REVDAT 4 20-SEP-23 3SRA 1 REMARK REVDAT 3 31-MAY-23 3SRA 1 COMPND SOURCE REMARK LINK REVDAT 3 2 1 ATOM REVDAT 2 30-NOV-11 3SRA 1 JRNL REVDAT 1 21-SEP-11 3SRA 0 JRNL AUTH E.J.DRAKE,A.M.GULICK JRNL TITL STRUCTURAL CHARACTERIZATION AND HIGH-THROUGHPUT SCREENING OF JRNL TITL 2 INHIBITORS OF PVDQ, AN NTN HYDROLASE INVOLVED IN PYOVERDINE JRNL TITL 3 SYNTHESIS. JRNL REF ACS CHEM.BIOL. V. 6 1277 2011 JRNL REFN ISSN 1554-8929 JRNL PMID 21892836 JRNL DOI 10.1021/CB2002973 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 39790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2102 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5467 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.06000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.923 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5694 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7714 ; 1.191 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 713 ; 5.809 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 270 ;36.276 ;23.296 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 864 ;13.497 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;16.124 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 822 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4438 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3543 ; 0.564 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5648 ; 1.079 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2151 ; 1.729 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2064 ; 2.966 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3SRA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42380 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3L91 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-15% PEG4000, 50-100 MM RUBIDIUM REMARK 280 CHLORIDE, 50 MM HEPES, PH 7.5. CRYSTAL TRANSFERRED THROUGH REMARK 280 MULTIPLE PH SOLUTIONS TO PH 5.0 FOR LIGAND ADDITION, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.87300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.87300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.08400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 83.31100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.08400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.31100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.87300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.08400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 83.31100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.87300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.08400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 83.31100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 29 OG1 CG2 REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 LYS A 144 CE NZ REMARK 470 LYS B 302 CE NZ REMARK 470 LYS B 319 CE NZ REMARK 470 LYS B 331 CE NZ REMARK 470 LYS B 530 CG CD CE NZ REMARK 470 ARG B 553 NE CZ NH1 NH2 REMARK 470 GLN B 559 CG CD OE1 NE2 REMARK 470 LYS B 562 CG CD CE NZ REMARK 470 ASP B 600 CG OD1 OD2 REMARK 470 GLN B 610 OE1 NE2 REMARK 470 GLU B 640 CG CD OE1 OE2 REMARK 470 ASP B 648 CB CG OD1 OD2 REMARK 470 ARG B 651 CZ NH1 NH2 REMARK 470 GLN B 662 CG CD OE1 NE2 REMARK 470 GLU B 705 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 795 O HOH B 818 8556 1.45 REMARK 500 O HOH A 314 O HOH B 78 6554 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 65 33.35 -143.27 REMARK 500 ASN A 107 41.77 -105.50 REMARK 500 PRO B 270 39.57 -88.55 REMARK 500 SER B 277 -159.78 -138.37 REMARK 500 PRO B 304 0.52 -69.14 REMARK 500 LYS B 353 -62.11 -135.45 REMARK 500 ASN B 357 -154.43 -110.22 REMARK 500 TRP B 402 30.45 -155.32 REMARK 500 ASN B 418 51.67 -93.12 REMARK 500 ASP B 479 -78.46 -92.41 REMARK 500 TRP B 489 -70.54 -30.78 REMARK 500 VAL B 504 -60.30 -99.40 REMARK 500 PRO B 647 -157.83 -60.30 REMARK 500 SER B 696 -91.93 -142.86 REMARK 500 SER B 717 163.22 76.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 20 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 21 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR B 763 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L91 RELATED DB: PDB REMARK 900 RELATED ID: 3L94 RELATED DB: PDB REMARK 900 RELATED ID: 2WYB RELATED DB: PDB REMARK 900 RELATED ID: 2WYC RELATED DB: PDB REMARK 900 RELATED ID: 2WYD RELATED DB: PDB REMARK 900 RELATED ID: 2WYE RELATED DB: PDB REMARK 900 RELATED ID: 3SRB RELATED DB: PDB REMARK 900 RELATED ID: 3SRC RELATED DB: PDB DBREF 3SRA A 29 191 UNP Q9I194 PVDQ_PSEAE 29 191 DBREF 3SRA B 217 762 UNP Q9I194 PVDQ_PSEAE 217 762 SEQRES 1 A 163 THR GLY LEU ALA ALA ASP ILE ARG TRP THR ALA TYR GLY SEQRES 2 A 163 VAL PRO HIS ILE ARG ALA LYS ASP GLU ARG GLY LEU GLY SEQRES 3 A 163 TYR GLY ILE GLY TYR ALA TYR ALA ARG ASP ASN ALA CYS SEQRES 4 A 163 LEU LEU ALA GLU GLU ILE VAL THR ALA ARG GLY GLU ARG SEQRES 5 A 163 ALA ARG TYR PHE GLY SER GLU GLY LYS SER SER ALA GLU SEQRES 6 A 163 LEU ASP ASN LEU PRO SER ASP ILE PHE TYR ALA TRP LEU SEQRES 7 A 163 ASN GLN PRO GLU ALA LEU GLN ALA PHE TRP GLN ALA GLN SEQRES 8 A 163 THR PRO ALA VAL ARG GLN LEU LEU GLU GLY TYR ALA ALA SEQRES 9 A 163 GLY PHE ASN ARG PHE LEU ARG GLU ALA ASP GLY LYS THR SEQRES 10 A 163 THR SER CYS LEU GLY GLN PRO TRP LEU ARG ALA ILE ALA SEQRES 11 A 163 THR ASP ASP LEU LEU ARG LEU THR ARG ARG LEU LEU VAL SEQRES 12 A 163 GLU GLY GLY VAL GLY GLN PHE ALA ASP ALA LEU VAL ALA SEQRES 13 A 163 ALA ALA PRO PRO GLY ALA GLU SEQRES 1 B 546 SER ASN ALA ILE ALA VAL GLY SER GLU ARG SER ALA ASP SEQRES 2 B 546 GLY LYS GLY MET LEU LEU ALA ASN PRO HIS PHE PRO TRP SEQRES 3 B 546 ASN GLY ALA MET ARG PHE TYR GLN MET HIS LEU THR ILE SEQRES 4 B 546 PRO GLY ARG LEU ASP VAL MET GLY ALA SER LEU PRO GLY SEQRES 5 B 546 LEU PRO VAL VAL ASN ILE GLY PHE SER ARG HIS LEU ALA SEQRES 6 B 546 TRP THR HIS THR VAL ASP THR SER SER HIS PHE THR LEU SEQRES 7 B 546 TYR ARG LEU ALA LEU ASP PRO LYS ASP PRO ARG ARG TYR SEQRES 8 B 546 LEU VAL ASP GLY ARG SER LEU PRO LEU GLU GLU LYS SER SEQRES 9 B 546 VAL ALA ILE GLU VAL ARG GLY ALA ASP GLY LYS LEU SER SEQRES 10 B 546 ARG VAL GLU HIS LYS VAL TYR GLN SER ILE TYR GLY PRO SEQRES 11 B 546 LEU VAL VAL TRP PRO GLY LYS LEU ASP TRP ASN ARG SER SEQRES 12 B 546 GLU ALA TYR ALA LEU ARG ASP ALA ASN LEU GLU ASN THR SEQRES 13 B 546 ARG VAL LEU GLN GLN TRP TYR SER ILE ASN GLN ALA SER SEQRES 14 B 546 ASP VAL ALA ASP LEU ARG ARG ARG VAL GLU ALA LEU GLN SEQRES 15 B 546 GLY ILE PRO TRP VAL ASN THR LEU ALA ALA ASP GLU GLN SEQRES 16 B 546 GLY ASN ALA LEU TYR MET ASN GLN SER VAL VAL PRO TYR SEQRES 17 B 546 LEU LYS PRO GLU LEU ILE PRO ALA CYS ALA ILE PRO GLN SEQRES 18 B 546 LEU VAL ALA GLU GLY LEU PRO ALA LEU GLN GLY GLN ASP SEQRES 19 B 546 SER ARG CYS ALA TRP SER ARG ASP PRO ALA ALA ALA GLN SEQRES 20 B 546 ALA GLY ILE THR PRO ALA ALA GLN LEU PRO VAL LEU LEU SEQRES 21 B 546 ARG ARG ASP PHE VAL GLN ASN SER ASN ASP SER ALA TRP SEQRES 22 B 546 LEU THR ASN PRO ALA SER PRO LEU GLN GLY PHE SER PRO SEQRES 23 B 546 LEU VAL SER GLN GLU LYS PRO ILE GLY PRO ARG ALA ARG SEQRES 24 B 546 TYR ALA LEU SER ARG LEU GLN GLY LYS GLN PRO LEU GLU SEQRES 25 B 546 ALA LYS THR LEU GLU GLU MET VAL THR ALA ASN HIS VAL SEQRES 26 B 546 PHE SER ALA ASP GLN VAL LEU PRO ASP LEU LEU ARG LEU SEQRES 27 B 546 CYS ARG ASP ASN GLN GLY GLU LYS SER LEU ALA ARG ALA SEQRES 28 B 546 CYS ALA ALA LEU ALA GLN TRP ASP ARG GLY ALA ASN LEU SEQRES 29 B 546 ASP SER GLY SER GLY PHE VAL TYR PHE GLN ARG PHE MET SEQRES 30 B 546 GLN ARG PHE ALA GLU LEU ASP GLY ALA TRP LYS GLU PRO SEQRES 31 B 546 PHE ASP ALA GLN ARG PRO LEU ASP THR PRO GLN GLY ILE SEQRES 32 B 546 ALA LEU ASP ARG PRO GLN VAL ALA THR GLN VAL ARG GLN SEQRES 33 B 546 ALA LEU ALA ASP ALA ALA ALA GLU VAL GLU LYS SER GLY SEQRES 34 B 546 ILE PRO ASP GLY ALA ARG TRP GLY ASP LEU GLN VAL SER SEQRES 35 B 546 THR ARG GLY GLN GLU ARG ILE ALA ILE PRO GLY GLY ASP SEQRES 36 B 546 GLY HIS PHE GLY VAL TYR ASN ALA ILE GLN SER VAL ARG SEQRES 37 B 546 LYS GLY ASP HIS LEU GLU VAL VAL GLY GLY THR SER TYR SEQRES 38 B 546 ILE GLN LEU VAL THR PHE PRO GLU GLU GLY PRO LYS ALA SEQRES 39 B 546 ARG GLY LEU LEU ALA PHE SER GLN SER SER ASP PRO ARG SEQRES 40 B 546 SER PRO HIS TYR ARG ASP GLN THR GLU LEU PHE SER ARG SEQRES 41 B 546 GLN GLN TRP GLN THR LEU PRO PHE SER ASP ARG GLN ILE SEQRES 42 B 546 ASP ALA ASP PRO GLN LEU GLN ARG LEU SER ILE ARG GLU HET EDO A 2 4 HET EDO A 3 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 7 4 HET EDO A 8 4 HET EDO A 10 4 HET EDO A 11 4 HET EDO A 20 4 HET EDO B 1 4 HET EDO B 12 4 HET EDO B 13 4 HET EDO B 14 4 HET EDO B 15 4 HET EDO B 16 4 HET EDO B 17 4 HET EDO B 18 4 HET EDO B 19 4 HET EDO B 21 4 HET MYR B 763 15 HETNAM EDO 1,2-ETHANEDIOL HETNAM MYR MYRISTIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 19(C2 H6 O2) FORMUL 22 MYR C14 H28 O2 FORMUL 23 HOH *245(H2 O) HELIX 1 1 ALA A 39 GLY A 41 5 3 HELIX 2 2 ASP A 49 ARG A 77 1 29 HELIX 3 3 GLU A 79 GLY A 85 1 7 HELIX 4 4 ASP A 95 ASN A 107 1 13 HELIX 5 5 GLN A 108 ALA A 118 1 11 HELIX 6 6 THR A 120 ALA A 141 1 22 HELIX 7 7 ALA A 158 VAL A 171 1 14 HELIX 8 8 GLU A 172 GLN A 177 5 6 HELIX 9 9 PHE A 178 ALA A 185 1 8 HELIX 10 10 ASN B 243 ARG B 247 5 5 HELIX 11 11 ASN B 368 ASN B 371 5 4 HELIX 12 12 ARG B 373 ALA B 384 1 12 HELIX 13 13 ASP B 386 GLN B 398 1 13 HELIX 14 14 LEU B 429 ALA B 434 1 6 HELIX 15 15 ILE B 435 ALA B 440 1 6 HELIX 16 16 ASP B 450 ALA B 454 5 5 HELIX 17 17 PRO B 468 LEU B 472 5 5 HELIX 18 18 GLY B 511 GLN B 522 1 12 HELIX 19 19 GLU B 528 ALA B 538 1 11 HELIX 20 20 VAL B 541 ASN B 558 1 18 HELIX 21 21 LEU B 564 TRP B 574 1 11 HELIX 22 22 SER B 584 ALA B 597 1 14 HELIX 23 23 ARG B 623 SER B 644 1 22 HELIX 24 24 ARG B 651 LEU B 655 1 5 HELIX 25 25 ASP B 671 GLY B 675 5 5 HELIX 26 26 ARG B 728 ARG B 736 1 9 HELIX 27 27 SER B 745 ALA B 751 1 7 SHEET 1 A10 VAL B 474 ARG B 477 0 SHEET 2 A10 ALA B 414 MET B 417 -1 N TYR B 416 O LEU B 475 SHEET 3 A10 VAL B 403 ASP B 409 -1 N ALA B 407 O LEU B 415 SHEET 4 A10 LEU B 280 VAL B 286 -1 N THR B 285 O ASN B 404 SHEET 5 A10 ILE B 274 PHE B 276 -1 N GLY B 275 O TRP B 282 SHEET 6 A10 LEU B 259 SER B 265 -1 N ALA B 264 O ILE B 274 SHEET 7 A10 TYR B 249 ILE B 255 -1 N LEU B 253 O VAL B 261 SHEET 8 A10 VAL A 42 ARG A 46 1 N ILE A 45 O HIS B 252 SHEET 9 A10 ALA A 32 THR A 38 -1 N ASP A 34 O ARG A 46 SHEET 10 A10 GLN B 756 ARG B 761 -1 O LEU B 758 N ILE A 35 SHEET 1 B 6 PHE B 480 ASN B 483 0 SHEET 2 B 6 ASN B 218 VAL B 222 -1 N ALA B 221 O VAL B 481 SHEET 3 B 6 MET B 233 ASN B 237 -1 O MET B 233 N VAL B 222 SHEET 4 B 6 TYR B 697 THR B 702 -1 O GLN B 699 N ALA B 236 SHEET 5 B 6 LYS B 709 LEU B 714 -1 O LEU B 713 N ILE B 698 SHEET 6 B 6 GLN B 740 THR B 741 -1 O GLN B 740 N GLY B 712 SHEET 1 C 4 HIS B 239 PRO B 241 0 SHEET 2 C 4 HIS B 688 THR B 695 -1 O GLY B 694 N PHE B 240 SHEET 3 C 4 GLN B 656 ARG B 660 1 N VAL B 657 O LEU B 689 SHEET 4 C 4 GLU B 663 ALA B 666 -1 O GLU B 663 N ARG B 660 SHEET 1 D 3 HIS B 239 PRO B 241 0 SHEET 2 D 3 HIS B 688 THR B 695 -1 O GLY B 694 N PHE B 240 SHEET 3 D 3 ILE B 680 LYS B 685 -1 N VAL B 683 O GLU B 690 SHEET 1 E 7 ARG B 312 PRO B 315 0 SHEET 2 E 7 ASP B 303 VAL B 309 -1 N TYR B 307 O LEU B 314 SHEET 3 E 7 PHE B 292 ASP B 300 -1 N ALA B 298 O LEU B 308 SHEET 4 E 7 GLU B 360 ASP B 366 -1 O ALA B 361 N LEU B 297 SHEET 5 E 7 GLY B 345 VAL B 348 -1 N VAL B 348 O TYR B 362 SHEET 6 E 7 LEU B 332 SER B 342 -1 N SER B 342 O GLY B 345 SHEET 7 E 7 GLU B 317 ARG B 326 -1 N ILE B 323 O VAL B 335 SHEET 1 F 4 ARG B 312 PRO B 315 0 SHEET 2 F 4 ASP B 303 VAL B 309 -1 N TYR B 307 O LEU B 314 SHEET 3 F 4 PHE B 292 ASP B 300 -1 N ALA B 298 O LEU B 308 SHEET 4 F 4 ALA B 445 GLN B 447 1 O LEU B 446 N ARG B 296 SHEET 1 G 2 TRP B 603 GLU B 605 0 SHEET 2 G 2 GLN B 617 ILE B 619 -1 O GLN B 617 N GLU B 605 SSBOND 1 CYS A 67 CYS A 148 1555 1555 2.05 SSBOND 2 CYS B 433 CYS B 453 1555 1555 2.04 SSBOND 3 CYS B 555 CYS B 568 1555 1555 2.03 LINK OG SER B 217 C1 MYR B 763 1555 1555 1.47 CISPEP 1 THR B 615 PRO B 616 0 -3.40 SITE 1 AC1 3 ALA A 184 PRO B 256 PRO B 351 SITE 1 AC2 5 LYS A 48 GLU A 93 LEU A 94 ASP A 95 SITE 2 AC2 5 ASP A 180 SITE 1 AC3 6 HOH A 28 ALA A 70 ILE A 73 TRP A 153 SITE 2 AC3 6 ARG A 155 ILE A 157 SITE 1 AC4 3 ARG A 77 GLU A 79 ARG A 164 SITE 1 AC5 3 GLN A 108 PRO A 109 GLU A 110 SITE 1 AC6 2 ARG A 139 GLU A 140 SITE 1 AC7 5 ALA A 92 TYR A 103 ARG A 168 GLU A 172 SITE 2 AC7 5 HOH A 332 SITE 1 AC8 1 GLU A 172 SITE 1 AC9 3 ARG A 136 GLU A 140 LEU B 758 SITE 1 BC1 3 ALA A 111 ARG A 167 LEU B 369 SITE 1 BC2 7 TYR B 344 GLY B 345 PRO B 346 LEU B 364 SITE 2 BC2 7 ARG B 365 ASP B 366 LEU B 369 SITE 1 BC3 2 ASN B 485 ASP B 486 SITE 1 BC4 2 SER B 519 ARG B 520 SITE 1 BC5 4 ALA B 228 ASP B 229 LEU B 527 ALA B 529 SITE 1 BC6 5 GLN B 573 TRP B 574 ASP B 575 ASP B 581 SITE 2 BC6 5 GLY B 583 SITE 1 BC7 5 LEU B 580 ASP B 581 ARG B 651 GLY B 653 SITE 2 BC7 5 ASP B 654 SITE 1 BC8 6 PHE B 596 ALA B 597 LEU B 599 GLY B 601 SITE 2 BC8 6 ALA B 602 TRP B 603 SITE 1 BC9 6 GLY B 672 ALA B 679 ILE B 680 GLN B 681 SITE 2 BC9 6 GLY B 693 GLY B 694 SITE 1 CC1 1 GLU B 762 SITE 1 CC2 14 THR A 166 LEU A 169 SER B 217 PRO B 238 SITE 2 CC2 14 HIS B 239 PHE B 240 PHE B 248 LEU B 266 SITE 3 CC2 14 LEU B 269 THR B 285 VAL B 286 VAL B 374 SITE 4 CC2 14 TRP B 378 HOH B 821 CRYST1 120.168 166.622 93.746 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008322 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010667 0.00000