HEADER TRANSFERASE/TRANSFERASE INHIBITOR 07-JUL-11 3SRV TITLE CRYSTAL STRUCTURE OF SPLEEN TYROSINE KINASE (SYK) IN COMPLEX WITH A TITLE 2 DIAMINOPYRIMIDINE CARBOXAMIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE SYK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 360-635); COMPND 5 SYNONYM: SPLEEN TYROSINE KINASE; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TYROSINE-PROTEIN KINASE SYK; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 360-635); COMPND 12 SYNONYM: SPLEEN TYROSINE KINASE; COMPND 13 EC: 2.7.10.2; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: SYK; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SK363, SYK, NON-RECEPTOR TYROSINE KINASE, SPLEEN TYROSINE KINASE, KEYWDS 2 TRANSFERASE, PHOSPHORYLATION, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.O.SOMERS,M.NEU REVDAT 3 03-APR-24 3SRV 1 REMARK SEQADV LINK REVDAT 2 12-OCT-11 3SRV 1 JRNL REVDAT 1 21-SEP-11 3SRV 0 JRNL AUTH J.LIDDLE,F.L.ATKINSON,M.D.BARKER,P.S.CARTER,N.R.CURTIS, JRNL AUTH 2 R.P.DAVIS,C.DOUAULT,M.C.DICKSON,D.ELWES,N.S.GARTON,M.GRAY, JRNL AUTH 3 T.G.HAYHOW,C.I.HOBBS,E.JONES,S.LEACH,K.LEAVENS,H.D.LEWIS, JRNL AUTH 4 S.MCCLEARY,M.NEU,V.K.PATEL,A.G.PRESTON,C.RAMIREZ-MOLINA, JRNL AUTH 5 T.J.SHIPLEY,P.A.SKONE,N.SMITHERS,D.O.SOMERS,A.L.WALKER, JRNL AUTH 6 R.J.WATSON,G.G.WEINGARTEN JRNL TITL DISCOVERY OF GSK143, A HIGHLY POTENT, SELECTIVE AND ORALLY JRNL TITL 2 EFFICACIOUS SPLEEN TYROSINE KINASE INHIBITOR. JRNL REF BIOORG.MED.CHEM.LETT. V. 21 6188 2011 JRNL REFN ISSN 0960-894X JRNL PMID 21903390 JRNL DOI 10.1016/J.BMCL.2011.07.082 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1929 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2725 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4292 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 472 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 1.61000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : -1.13000 REMARK 3 B13 (A**2) : 0.19000 REMARK 3 B23 (A**2) : 0.69000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4477 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3081 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6029 ; 1.378 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7488 ; 0.881 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 525 ; 4.399 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;36.250 ;24.010 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 813 ;13.965 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;16.990 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 621 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4916 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 909 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2615 ; 1.218 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1068 ; 0.245 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4191 ; 2.187 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1862 ; 2.875 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1836 ; 4.399 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3SRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38589 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 39.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : 0.40200 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: OTHER IN-HOUSE COORDINATES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M NA-K-PHOSPHATE, 0.1M REMARK 280 BIS-TRIS-PROPANE PH 6.5, 5MM DTT, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 359 REMARK 465 PRO A 360 REMARK 465 LYS A 361 REMARK 465 GLU A 362 REMARK 465 VAL A 363 REMARK 465 SER A 379 REMARK 465 GLY A 380 REMARK 465 ASN A 406 REMARK 465 GLU A 407 REMARK 465 ALA A 408 REMARK 465 ASN A 409 REMARK 465 ASP A 410 REMARK 465 PRO A 411 REMARK 465 ASN A 635 REMARK 465 GLY B 359 REMARK 465 PRO B 360 REMARK 465 LYS B 361 REMARK 465 GLU B 362 REMARK 465 VAL B 363 REMARK 465 LYS B 405 REMARK 465 ASN B 406 REMARK 465 GLU B 407 REMARK 465 ALA B 408 REMARK 465 ASN B 409 REMARK 465 ASP B 410 REMARK 465 VAL B 633 REMARK 465 VAL B 634 REMARK 465 ASN B 635 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 533 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 118 O HOH B 146 2.07 REMARK 500 O HOH B 15 O HOH B 16 2.11 REMARK 500 O HOH A 118 O HOH A 216 2.16 REMARK 500 OD1 ASP A 468 O HOH A 206 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 554 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 393 -109.45 59.46 REMARK 500 ALA A 441 -136.35 -145.28 REMARK 500 ASP A 494 43.01 -150.11 REMARK 500 ASP A 512 72.28 65.42 REMARK 500 HIS A 531 73.13 -111.34 REMARK 500 TRP A 609 34.43 -93.11 REMARK 500 LYS B 393 -113.19 62.83 REMARK 500 ALA B 412 -79.60 -59.54 REMARK 500 ALA B 441 -133.03 -121.30 REMARK 500 ASP B 494 44.45 -151.51 REMARK 500 ASP B 512 72.82 62.47 REMARK 500 HIS B 531 88.74 -67.53 REMARK 500 TRP B 609 34.79 -88.46 REMARK 500 TYR B 631 53.98 -63.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S19 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 636 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S19 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 4 DBREF 3SRV A 360 635 UNP P43405 KSYK_HUMAN 360 635 DBREF 3SRV B 360 635 UNP P43405 KSYK_HUMAN 360 635 SEQADV 3SRV GLY A 359 UNP P43405 EXPRESSION TAG SEQADV 3SRV GLY B 359 UNP P43405 EXPRESSION TAG SEQRES 1 A 277 GLY PRO LYS GLU VAL TYR LEU ASP ARG LYS LEU LEU THR SEQRES 2 A 277 LEU GLU ASP LYS GLU LEU GLY SER GLY ASN PHE GLY THR SEQRES 3 A 277 VAL LYS LYS GLY TYR TYR GLN MET LYS LYS VAL VAL LYS SEQRES 4 A 277 THR VAL ALA VAL LYS ILE LEU LYS ASN GLU ALA ASN ASP SEQRES 5 A 277 PRO ALA LEU LYS ASP GLU LEU LEU ALA GLU ALA ASN VAL SEQRES 6 A 277 MET GLN GLN LEU ASP ASN PRO TYR ILE VAL ARG MET ILE SEQRES 7 A 277 GLY ILE CYS GLU ALA GLU SER TRP MET LEU VAL MET GLU SEQRES 8 A 277 MET ALA GLU LEU GLY PRO LEU ASN LYS TYR LEU GLN GLN SEQRES 9 A 277 ASN ARG HIS VAL LYS ASP LYS ASN ILE ILE GLU LEU VAL SEQRES 10 A 277 HIS GLN VAL SER MET GLY MET LYS TYR LEU GLU GLU SER SEQRES 11 A 277 ASN PHE VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU SEQRES 12 A 277 LEU VAL THR GLN HIS TYR ALA LYS ILE SER ASP PHE GLY SEQRES 13 A 277 LEU SER LYS ALA LEU ARG ALA ASP GLU ASN PTR TYR LYS SEQRES 14 A 277 ALA GLN THR HIS GLY LYS TRP PRO VAL LYS TRP TYR ALA SEQRES 15 A 277 PRO GLU CYS ILE ASN TYR TYR LYS PHE SER SER LYS SER SEQRES 16 A 277 ASP VAL TRP SER PHE GLY VAL LEU MET TRP GLU ALA PHE SEQRES 17 A 277 SER TYR GLY GLN LYS PRO TYR ARG GLY MET LYS GLY SER SEQRES 18 A 277 GLU VAL THR ALA MET LEU GLU LYS GLY GLU ARG MET GLY SEQRES 19 A 277 CYS PRO ALA GLY CYS PRO ARG GLU MET TYR ASP LEU MET SEQRES 20 A 277 ASN LEU CYS TRP THR TYR ASP VAL GLU ASN ARG PRO GLY SEQRES 21 A 277 PHE ALA ALA VAL GLU LEU ARG LEU ARG ASN TYR TYR TYR SEQRES 22 A 277 ASP VAL VAL ASN SEQRES 1 B 277 GLY PRO LYS GLU VAL TYR LEU ASP ARG LYS LEU LEU THR SEQRES 2 B 277 LEU GLU ASP LYS GLU LEU GLY SER GLY ASN PHE GLY THR SEQRES 3 B 277 VAL LYS LYS GLY TYR TYR GLN MET LYS LYS VAL VAL LYS SEQRES 4 B 277 THR VAL ALA VAL LYS ILE LEU LYS ASN GLU ALA ASN ASP SEQRES 5 B 277 PRO ALA LEU LYS ASP GLU LEU LEU ALA GLU ALA ASN VAL SEQRES 6 B 277 MET GLN GLN LEU ASP ASN PRO TYR ILE VAL ARG MET ILE SEQRES 7 B 277 GLY ILE CYS GLU ALA GLU SER TRP MET LEU VAL MET GLU SEQRES 8 B 277 MET ALA GLU LEU GLY PRO LEU ASN LYS TYR LEU GLN GLN SEQRES 9 B 277 ASN ARG HIS VAL LYS ASP LYS ASN ILE ILE GLU LEU VAL SEQRES 10 B 277 HIS GLN VAL SER MET GLY MET LYS TYR LEU GLU GLU SER SEQRES 11 B 277 ASN PHE VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU SEQRES 12 B 277 LEU VAL THR GLN HIS TYR ALA LYS ILE SER ASP PHE GLY SEQRES 13 B 277 LEU SER LYS ALA LEU ARG ALA ASP GLU ASN TYR TYR LYS SEQRES 14 B 277 ALA GLN THR HIS GLY LYS TRP PRO VAL LYS TRP TYR ALA SEQRES 15 B 277 PRO GLU CYS ILE ASN TYR TYR LYS PHE SER SER LYS SER SEQRES 16 B 277 ASP VAL TRP SER PHE GLY VAL LEU MET TRP GLU ALA PHE SEQRES 17 B 277 SER TYR GLY GLN LYS PRO TYR ARG GLY MET LYS GLY SER SEQRES 18 B 277 GLU VAL THR ALA MET LEU GLU LYS GLY GLU ARG MET GLY SEQRES 19 B 277 CYS PRO ALA GLY CYS PRO ARG GLU MET TYR ASP LEU MET SEQRES 20 B 277 ASN LEU CYS TRP THR TYR ASP VAL GLU ASN ARG PRO GLY SEQRES 21 B 277 PHE ALA ALA VAL GLU LEU ARG LEU ARG ASN TYR TYR TYR SEQRES 22 B 277 ASP VAL VAL ASN MODRES 3SRV PTR A 525 TYR O-PHOSPHOTYROSINE HET PTR A 525 16 HET S19 A 1 25 HET GOL A 636 6 HET GOL A 2 6 HET GOL A 3 6 HET S19 B 2 25 HET GOL B 4 6 HETNAM PTR O-PHOSPHOTYROSINE HETNAM S19 2-{[(3R,4R)-3-AMINOTETRAHYDRO-2H-PYRAN-4-YL]AMINO}-4- HETNAM 2 S19 [(4-METHYLPHENYL)AMINO]PYRIMIDINE-5-CARBOXAMIDE HETNAM GOL GLYCEROL HETSYN PTR PHOSPHONOTYROSINE HETSYN S19 GSK143 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PTR C9 H12 N O6 P FORMUL 3 S19 2(C17 H22 N6 O2) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 9 HOH *472(H2 O) HELIX 1 1 ASP A 366 LYS A 368 5 3 HELIX 2 2 ALA A 412 GLN A 426 1 15 HELIX 3 3 LEU A 456 ASN A 463 1 8 HELIX 4 4 LYS A 467 SER A 488 1 22 HELIX 5 5 ALA A 496 ARG A 498 5 3 HELIX 6 6 PRO A 535 TYR A 539 5 5 HELIX 7 7 ALA A 540 TYR A 547 1 8 HELIX 8 8 SER A 550 SER A 567 1 18 HELIX 9 9 LYS A 577 LYS A 587 1 11 HELIX 10 10 PRO A 598 TRP A 609 1 12 HELIX 11 11 ASP A 612 ARG A 616 5 5 HELIX 12 12 GLY A 618 VAL A 633 1 16 HELIX 13 13 ASP B 366 LYS B 368 5 3 HELIX 14 14 PRO B 411 LEU B 427 1 17 HELIX 15 15 LEU B 456 ASN B 463 1 8 HELIX 16 16 LYS B 467 SER B 488 1 22 HELIX 17 17 ALA B 496 ARG B 498 5 3 HELIX 18 18 PRO B 535 TYR B 539 5 5 HELIX 19 19 ALA B 540 TYR B 547 1 8 HELIX 20 20 SER B 550 SER B 567 1 18 HELIX 21 21 LYS B 577 LYS B 587 1 11 HELIX 22 22 PRO B 598 TRP B 609 1 12 HELIX 23 23 GLY B 618 TYR B 631 1 14 SHEET 1 A 5 LEU A 370 GLY A 378 0 SHEET 2 A 5 GLY A 383 MET A 392 -1 O LYS A 387 N GLU A 373 SHEET 3 A 5 VAL A 395 LEU A 404 -1 O ILE A 403 N THR A 384 SHEET 4 A 5 TRP A 444 GLU A 449 -1 O MET A 448 N ALA A 400 SHEET 5 A 5 MET A 435 GLU A 440 -1 N ILE A 436 O VAL A 447 SHEET 1 B 4 LEU A 370 GLY A 378 0 SHEET 2 B 4 GLY A 383 MET A 392 -1 O LYS A 387 N GLU A 373 SHEET 3 B 4 VAL A 395 LEU A 404 -1 O ILE A 403 N THR A 384 SHEET 4 B 4 GLU B 589 MET B 591 -1 O ARG B 590 N VAL A 396 SHEET 1 C 3 GLY A 454 PRO A 455 0 SHEET 2 C 3 VAL A 500 THR A 504 -1 O LEU A 502 N GLY A 454 SHEET 3 C 3 TYR A 507 ILE A 510 -1 O LYS A 509 N LEU A 501 SHEET 1 D 2 PHE A 490 VAL A 491 0 SHEET 2 D 2 LYS A 517 ALA A 518 -1 O LYS A 517 N VAL A 491 SHEET 1 E 2 TYR A 526 LYS A 527 0 SHEET 2 E 2 LYS A 548 PHE A 549 -1 O PHE A 549 N TYR A 526 SHEET 1 F 5 LEU B 370 GLY B 380 0 SHEET 2 F 5 GLY B 383 MET B 392 -1 O LYS B 387 N GLU B 373 SHEET 3 F 5 VAL B 395 ILE B 403 -1 O ILE B 403 N THR B 384 SHEET 4 F 5 TRP B 444 GLU B 449 -1 O MET B 448 N ALA B 400 SHEET 5 F 5 MET B 435 GLU B 440 -1 N GLY B 437 O VAL B 447 SHEET 1 G 3 GLY B 454 PRO B 455 0 SHEET 2 G 3 VAL B 500 THR B 504 -1 O LEU B 502 N GLY B 454 SHEET 3 G 3 TYR B 507 ILE B 510 -1 O LYS B 509 N LEU B 501 SHEET 1 H 2 PHE B 490 VAL B 491 0 SHEET 2 H 2 LYS B 517 ALA B 518 -1 O LYS B 517 N VAL B 491 SHEET 1 I 2 TYR B 526 LYS B 527 0 SHEET 2 I 2 LYS B 548 PHE B 549 -1 O PHE B 549 N TYR B 526 LINK C ASN A 524 N PTR A 525 1555 1555 1.33 LINK C PTR A 525 N TYR A 526 1555 1555 1.32 SITE 1 AC1 14 GOL A 2 HOH A 52 HOH A 235 ALA A 400 SITE 2 AC1 14 MET A 448 GLU A 449 ALA A 451 GLY A 454 SITE 3 AC1 14 PRO A 455 ARG A 498 ASN A 499 LEU A 501 SITE 4 AC1 14 SER A 511 ASP A 512 SITE 1 AC2 7 HOH A 76 HOH A 202 MET A 424 LEU A 427 SITE 2 AC2 7 ARG A 434 MET A 435 HOH A 637 SITE 1 AC3 6 S19 A 1 LYS A 402 ASP A 494 ARG A 498 SITE 2 AC3 6 ASN A 499 ASP A 512 SITE 1 AC4 1 LYS A 458 SITE 1 AC5 17 HOH B 52 HOH B 199 LEU B 377 SER B 379 SITE 2 AC5 17 ALA B 400 VAL B 433 MET B 448 GLU B 449 SITE 3 AC5 17 MET B 450 ALA B 451 GLY B 454 PRO B 455 SITE 4 AC5 17 ARG B 498 ASN B 499 LEU B 501 SER B 511 SITE 5 AC5 17 ASP B 512 SITE 1 AC6 3 HOH B 32 GLN B 461 LYS B 571 CRYST1 40.124 42.316 87.621 99.68 90.16 100.19 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024923 0.004478 0.000852 0.00000 SCALE2 0.000000 0.024010 0.004178 0.00000 SCALE3 0.000000 0.000000 0.011584 0.00000