HEADER METAL BINDING PROTEIN 08-JUL-11 3SSZ TITLE THE CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING TITLE 2 ENZYME FROM RHODOBACTERACEAE BACTERIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME, N-TERMINAL COMPND 3 DOMAIN PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTERACEAE BACTERIUM KLH11; SOURCE 3 ORGANISM_TAXID: 467661; SOURCE 4 GENE: RKLH11_3829; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, ENOLASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,S.CHAMALA,B.EVANS,R.FOTI,A.GIZZI,B.HILLERICH,A.KAR,J.LAFLEUR, AUTHOR 2 R.SEIDEL,G.VILLIGAS,W.ZENCHECK,S.C.ALMO,S.SWAMINATHAN,NEW YORK AUTHOR 3 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 2 13-SEP-23 3SSZ 1 REMARK SEQADV REVDAT 1 17-AUG-11 3SSZ 0 JRNL AUTH Z.ZHANG,S.C.ALMO,S.SWAMINATHAN JRNL TITL THE CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE JRNL TITL 2 LACTONIZING ENZYME FROM RHODOBACTERACEAE BACTERIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3678 - 4.7820 1.00 2799 121 0.1690 0.1855 REMARK 3 2 4.7820 - 3.7961 1.00 2654 134 0.1487 0.1856 REMARK 3 3 3.7961 - 3.3164 1.00 2597 160 0.1926 0.2514 REMARK 3 4 3.3164 - 3.0132 1.00 2597 156 0.2114 0.2689 REMARK 3 5 3.0132 - 2.7973 1.00 2586 137 0.2082 0.2881 REMARK 3 6 2.7973 - 2.6323 1.00 2590 130 0.2096 0.2666 REMARK 3 7 2.6323 - 2.5005 1.00 2559 155 0.2044 0.2798 REMARK 3 8 2.5005 - 2.3917 0.99 2551 137 0.2072 0.2956 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 33.32 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.630 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13210 REMARK 3 B22 (A**2) : -0.13210 REMARK 3 B33 (A**2) : 0.26410 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3107 REMARK 3 ANGLE : 1.100 4217 REMARK 3 CHIRALITY : 0.070 449 REMARK 3 PLANARITY : 0.005 541 REMARK 3 DIHEDRAL : 15.106 1133 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SSZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22070 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.10 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.30 REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 17.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FXG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 2.0 AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 68.38850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 68.38850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 58.14150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 68.38850 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 68.38850 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 58.14150 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 68.38850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 68.38850 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 58.14150 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 68.38850 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 68.38850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 58.14150 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 68.38850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.38850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 58.14150 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 68.38850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 68.38850 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 58.14150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 68.38850 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 68.38850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 58.14150 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 68.38850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 68.38850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 58.14150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR STATES THAT THE BIOLOGICAL UNIT OF THIS PROTEIN REMARK 300 IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 41540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 84480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -252.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 136.77700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 136.77700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 136.77700 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 136.77700 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 136.77700 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 136.77700 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 136.77700 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 136.77700 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 136.77700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 502 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 465 LEU A 18 REMARK 465 TYR A 19 REMARK 465 PHE A 20 REMARK 465 GLN A 21 REMARK 465 SER A 22 REMARK 465 GLU A 57 REMARK 465 LYS A 58 REMARK 465 GLY A 59 REMARK 465 ASP A 60 REMARK 465 ALA A 61 REMARK 465 MET A 62 REMARK 465 SER A 63 REMARK 465 SER A 64 REMARK 465 PHE A 65 REMARK 465 ARG A 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 43 172.53 -59.30 REMARK 500 ASN A 46 -106.51 70.61 REMARK 500 ALA A 90 68.19 19.90 REMARK 500 LYS A 175 -111.02 -152.57 REMARK 500 SER A 293 164.23 73.39 REMARK 500 ALA A 340 137.72 95.53 REMARK 500 ASP A 365 173.22 -53.89 REMARK 500 GLU A 367 -36.27 -133.75 REMARK 500 LYS A 404 -36.29 -33.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-200756 RELATED DB: TARGETDB DBREF 3SSZ A 23 413 UNP B9NY46 B9NY46_9RHOB 1 391 SEQADV 3SSZ MET A 1 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ HIS A 2 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ HIS A 3 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ HIS A 4 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ HIS A 5 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ HIS A 6 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ HIS A 7 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ SER A 8 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ SER A 9 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ GLY A 10 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ VAL A 11 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ ASP A 12 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ LEU A 13 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ GLY A 14 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ THR A 15 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ GLU A 16 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ ASN A 17 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ LEU A 18 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ TYR A 19 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ PHE A 20 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ GLN A 21 UNP B9NY46 EXPRESSION TAG SEQADV 3SSZ SER A 22 UNP B9NY46 EXPRESSION TAG SEQRES 1 A 413 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 413 GLY THR GLU ASN LEU TYR PHE GLN SER MET THR LYS ILE SEQRES 3 A 413 LYS SER VAL ARG THR ARG VAL TRP ASN TRP THR GLY PRO SEQRES 4 A 413 THR VAL PRO PRO THR GLY ASN PHE CYS THR ASN ALA SER SEQRES 5 A 413 ASP VAL LEU TYR GLU LYS GLY ASP ALA MET SER SER PHE SEQRES 6 A 413 ARG PHE HIS GLN TRP LEU THR CYS GLU VAL GLU THR GLU SEQRES 7 A 413 ASP GLY THR VAL GLY ILE GLY ASN ALA ALA LEU ALA PRO SEQRES 8 A 413 SER VAL VAL LYS ALA ALA ILE ASP GLU TRP PHE ALA PRO SEQRES 9 A 413 LEU VAL ILE GLY GLU ASP PRO PHE ASP TYR ALA TYR LEU SEQRES 10 A 413 TRP GLU LYS MET TYR ARG ARG SER HIS ALA TRP GLY ARG SEQRES 11 A 413 LYS GLY ILE GLY MET THR ALA ILE SER ALA VAL ASP LEU SEQRES 12 A 413 ALA ILE TRP ASP LEU MET GLY LYS LEU ALA GLY LYS PRO SEQRES 13 A 413 VAL PHE LYS LEU LEU GLY GLY ARG THR LYS GLU LYS ILE SEQRES 14 A 413 PRO VAL TYR TYR SER LYS LEU TYR SER GLY PRO ILE ASP SEQRES 15 A 413 VAL MET GLN ALA GLU ALA ALA GLU ALA GLN LYS ASN GLY SEQRES 16 A 413 TYR SER ALA TYR LYS MET ARG PHE GLY TRP GLY PRO LYS SEQRES 17 A 413 ASP GLY MET ASP GLY MET ARG GLU ASN LEU LYS ARG VAL SEQRES 18 A 413 GLU ALA VAL ARG GLU VAL ILE GLY TYR ASP VAL ASP LEU SEQRES 19 A 413 MET LEU GLU CYS TYR MET GLY TRP ASN LEU ASP TYR THR SEQRES 20 A 413 LYS ARG MET LEU PRO LYS LEU VAL LYS TYR GLU PRO ARG SEQRES 21 A 413 TRP LEU GLU GLU PRO VAL ILE ALA ASP ASP VAL GLU GLY SEQRES 22 A 413 TYR ARG GLU LEU ASN ALA MET ASN ILE VAL PRO ILE SER SEQRES 23 A 413 GLY GLY GLU HIS GLU PHE SER VAL ILE GLY CYS LYS ASP SEQRES 24 A 413 LEU ILE GLU LYS LYS ALA VAL SER VAL LEU GLN TYR ASP SEQRES 25 A 413 THR ASN ARG VAL GLY GLY ILE THR ALA ALA GLN LYS ILE SEQRES 26 A 413 ASN ALA ILE ALA GLU ALA PHE GLN VAL PRO VAL ILE PRO SEQRES 27 A 413 HIS ALA GLY GLN MET HIS ASN TYR HIS LEU THR MET ALA SEQRES 28 A 413 ASN ALA ASN CYS MET ILE SER GLU TYR PHE PRO VAL PHE SEQRES 29 A 413 ASP VAL GLU VAL GLY ASN GLU LEU PHE TYR TYR ILE PHE SEQRES 30 A 413 GLU GLY ASP PRO GLU ALA VAL ASP GLY PHE LEU ASP LEU SEQRES 31 A 413 ASP ASP ASP THR PRO GLY LEU GLY ILE GLU ILE THR ASP SEQRES 32 A 413 LYS HIS LEU LYS HIS PHE GLN ILE THR GLU HET SO4 A 414 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *104(H2 O) HELIX 1 1 ASN A 50 LEU A 55 5 6 HELIX 2 2 ALA A 90 PHE A 102 1 13 HELIX 3 3 PHE A 102 ILE A 107 1 6 HELIX 4 4 ASP A 110 PHE A 112 5 3 HELIX 5 5 ASP A 113 SER A 125 1 13 HELIX 6 6 SER A 125 ARG A 130 1 6 HELIX 7 7 GLY A 132 GLY A 154 1 23 HELIX 8 8 PRO A 156 GLY A 162 1 7 HELIX 9 9 PRO A 180 GLN A 192 1 13 HELIX 10 10 LYS A 193 GLY A 195 5 3 HELIX 11 11 GLY A 206 LYS A 208 5 3 HELIX 12 12 ASP A 209 GLY A 229 1 21 HELIX 13 13 ASN A 243 VAL A 255 1 13 HELIX 14 14 LYS A 256 GLU A 258 5 3 HELIX 15 15 ASP A 270 MET A 280 1 11 HELIX 16 16 SER A 293 LYS A 303 1 11 HELIX 17 17 ASP A 312 GLY A 317 1 6 HELIX 18 18 GLY A 318 GLN A 333 1 16 HELIX 19 19 GLN A 342 ASN A 352 1 11 HELIX 20 20 LEU A 372 ILE A 376 1 5 HELIX 21 21 HIS A 405 LYS A 407 5 3 SHEET 1 A 4 VAL A 82 ALA A 87 0 SHEET 2 A 4 GLN A 69 THR A 77 -1 N CYS A 73 O GLY A 85 SHEET 3 A 4 ILE A 26 TRP A 36 -1 N LYS A 27 O GLU A 76 SHEET 4 A 4 PHE A 409 THR A 412 -1 O THR A 412 N VAL A 33 SHEET 1 B 7 VAL A 308 LEU A 309 0 SHEET 2 B 7 ILE A 285 GLY A 287 1 N GLY A 287 O VAL A 308 SHEET 3 B 7 TRP A 261 GLU A 263 1 N LEU A 262 O SER A 286 SHEET 4 B 7 ASP A 233 GLU A 237 1 N LEU A 236 O GLU A 263 SHEET 5 B 7 ALA A 198 ARG A 202 1 N TYR A 199 O MET A 235 SHEET 6 B 7 ILE A 169 SER A 174 1 N TYR A 173 O LYS A 200 SHEET 7 B 7 SER A 358 TYR A 360 1 O TYR A 360 N SER A 174 SHEET 1 C 7 VAL A 308 LEU A 309 0 SHEET 2 C 7 ILE A 285 GLY A 287 1 N GLY A 287 O VAL A 308 SHEET 3 C 7 TRP A 261 GLU A 263 1 N LEU A 262 O SER A 286 SHEET 4 C 7 ASP A 233 GLU A 237 1 N LEU A 236 O GLU A 263 SHEET 5 C 7 ALA A 198 ARG A 202 1 N TYR A 199 O MET A 235 SHEET 6 C 7 ILE A 169 SER A 174 1 N TYR A 173 O LYS A 200 SHEET 7 C 7 PHE A 387 LEU A 388 -1 O LEU A 388 N ILE A 169 SHEET 1 D 2 PHE A 377 GLU A 378 0 SHEET 2 D 2 GLU A 400 ILE A 401 -1 O GLU A 400 N GLU A 378 CISPEP 1 ASN A 46 PHE A 47 0 -19.44 SITE 1 AC1 8 TYR A 239 ARG A 315 ASN A 370 HOH A 417 SITE 2 AC1 8 HOH A 448 HOH A 495 HOH A 496 HOH A 518 CRYST1 136.777 136.777 116.283 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007311 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008600 0.00000