HEADER APOPTOSIS/SIGNALING PROTEIN 11-JUL-11 3SU8 TITLE CRYSTAL STRUCTURE OF A TRUNCATED INTRACELLULAR DOMAIN OF PLEXIN-B1 IN TITLE 2 COMPLEX WITH RAC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-177; COMPND 5 SYNONYM: CELL MIGRATION-INDUCING GENE 5 PROTEIN, RAS-LIKE PROTEIN COMPND 6 TC25, P21-RAC1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PLEXIN-B1; COMPND 10 CHAIN: X; COMPND 11 FRAGMENT: UNP RESIDUES 1533-2135; COMPND 12 SYNONYM: SEMAPHORIN RECEPTOR SEP; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAC1, TC25, MIG5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: PLXNB1, KIAA0407, PLXN5, SEP; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS AXON GUIDANCE, SIGNAL TRANSDUCTION, APOPTOSIS-SIGNALING PROTEIN KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.H.BELL,A.R.ARICESCU,E.Y.JONES,C.SIEBOLD REVDAT 3 28-FEB-24 3SU8 1 REMARK SEQADV LINK REVDAT 2 05-OCT-11 3SU8 1 JRNL REVDAT 1 28-SEP-11 3SU8 0 JRNL AUTH C.H.BELL,A.R.ARICESCU,E.Y.JONES,C.SIEBOLD JRNL TITL A DUAL BINDING MODE FOR RHOGTPASES IN PLEXIN SIGNALLING. JRNL REF PLOS BIOL. V. 9 01134 2011 JRNL REFN ISSN 1544-9173 JRNL PMID 21912513 JRNL DOI 10.1371/JOURNAL.PBIO.1001134 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 786 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2807 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2547 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2684 REMARK 3 BIN R VALUE (WORKING SET) : 0.2528 REMARK 3 BIN FREE R VALUE : 0.2956 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.38 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 123 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5729 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70700 REMARK 3 B22 (A**2) : -2.31200 REMARK 3 B33 (A**2) : 1.60500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 10.63220 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.678 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.854 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5885 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7997 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2069 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 139 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 837 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5885 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 760 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6397 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.52 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { X|1560 - X|1699 } REMARK 3 ORIGIN FOR THE GROUP (A): 22.4945 -18.8426 31.6460 REMARK 3 T TENSOR REMARK 3 T11: -0.0009 T22: -0.1207 REMARK 3 T33: -0.0734 T12: 0.0317 REMARK 3 T13: 0.1005 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 1.6345 L22: 1.6404 REMARK 3 L33: 3.3850 L12: 0.2950 REMARK 3 L13: -0.1104 L23: 0.5144 REMARK 3 S TENSOR REMARK 3 S11: 0.1753 S12: 0.0027 S13: -0.2015 REMARK 3 S21: 0.3594 S22: -0.0168 S23: 0.2888 REMARK 3 S31: -0.0877 S32: -0.4187 S33: -0.1585 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { X|1700 - X|1890 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.1161 -35.0871 -6.5955 REMARK 3 T TENSOR REMARK 3 T11: -0.1318 T22: 0.0638 REMARK 3 T33: -0.1140 T12: -0.0680 REMARK 3 T13: -0.0787 T23: 0.0620 REMARK 3 L TENSOR REMARK 3 L11: 1.9918 L22: 2.5340 REMARK 3 L33: 2.5095 L12: 1.3267 REMARK 3 L13: 0.9047 L23: 1.0358 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: -0.0902 S13: -0.3226 REMARK 3 S21: -0.3124 S22: 0.0092 S23: 0.3209 REMARK 3 S31: 0.0419 S32: -0.4128 S33: -0.0566 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { X|1891 - X|1908 } REMARK 3 ORIGIN FOR THE GROUP (A): 42.9258 -54.8410 15.6567 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: -0.0149 REMARK 3 T33: 0.1142 T12: 0.0882 REMARK 3 T13: 0.0811 T23: 0.1255 REMARK 3 L TENSOR REMARK 3 L11: 2.3308 L22: 4.2102 REMARK 3 L33: 3.6457 L12: -2.3222 REMARK 3 L13: -4.2652 L23: -3.5144 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: 0.2761 S13: 0.1682 REMARK 3 S21: -0.1570 S22: 0.0799 S23: 0.0653 REMARK 3 S31: -0.1530 S32: -0.0743 S33: -0.0864 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { X|1909 - X|1999 } REMARK 3 ORIGIN FOR THE GROUP (A): 38.7754 -19.8821 14.5173 REMARK 3 T TENSOR REMARK 3 T11: -0.0163 T22: -0.1167 REMARK 3 T33: -0.1362 T12: 0.0175 REMARK 3 T13: 0.0908 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.7625 L22: 2.6173 REMARK 3 L33: 3.5366 L12: -0.1447 REMARK 3 L13: -0.5699 L23: 1.3133 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: -0.0707 S13: 0.0874 REMARK 3 S21: 0.0833 S22: 0.0985 S23: -0.3179 REMARK 3 S31: -0.3215 S32: 0.0580 S33: -0.1968 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { X|2000 - X|2129 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.0475 -18.8971 26.5785 REMARK 3 T TENSOR REMARK 3 T11: -0.1529 T22: -0.2654 REMARK 3 T33: -0.1894 T12: 0.0962 REMARK 3 T13: -0.0279 T23: 0.0791 REMARK 3 L TENSOR REMARK 3 L11: 2.3926 L22: 2.5630 REMARK 3 L33: 4.2521 L12: 0.6145 REMARK 3 L13: -1.0554 L23: 0.6881 REMARK 3 S TENSOR REMARK 3 S11: 0.2215 S12: -0.1683 S13: -0.0124 REMARK 3 S21: 0.2966 S22: 0.0559 S23: -0.0036 REMARK 3 S31: -0.0865 S32: 0.0262 S33: -0.2774 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|1 - A|178 } REMARK 3 ORIGIN FOR THE GROUP (A): -4.6276 -50.4964 -29.8580 REMARK 3 T TENSOR REMARK 3 T11: -0.3039 T22: -0.1810 REMARK 3 T33: -0.0549 T12: -0.1633 REMARK 3 T13: -0.1876 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 6.6866 L22: 6.7327 REMARK 3 L33: 4.0910 L12: 3.6070 REMARK 3 L13: 1.3450 L23: 0.8928 REMARK 3 S TENSOR REMARK 3 S11: -0.1325 S12: -0.1743 S13: -0.0456 REMARK 3 S21: -0.3893 S22: -0.1196 S23: 0.1370 REMARK 3 S31: -0.0839 S32: 0.0668 S33: 0.2521 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL; Y REMARK 200 RADIATION SOURCE : NULL; ESRF REMARK 200 BEAMLINE : NULL; ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL; 0.8726 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL; NULL REMARK 200 DETECTOR MANUFACTURER : NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 91.72500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 91.72500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.90500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 HIS A 184 REMARK 465 MET X 1525 REMARK 465 GLY X 1526 REMARK 465 HIS X 1527 REMARK 465 HIS X 1528 REMARK 465 HIS X 1529 REMARK 465 HIS X 1530 REMARK 465 HIS X 1531 REMARK 465 HIS X 1532 REMARK 465 GLU X 1533 REMARK 465 SER X 1534 REMARK 465 SER X 1535 REMARK 465 VAL X 1536 REMARK 465 ARG X 1537 REMARK 465 ASP X 1538 REMARK 465 ARG X 1539 REMARK 465 CYS X 1540 REMARK 465 LYS X 1541 REMARK 465 LYS X 1542 REMARK 465 GLU X 1543 REMARK 465 PHE X 1544 REMARK 465 THR X 1545 REMARK 465 ASP X 1546 REMARK 465 LEU X 1547 REMARK 465 MET X 1548 REMARK 465 THR X 1549 REMARK 465 GLU X 1550 REMARK 465 MET X 1551 REMARK 465 THR X 1552 REMARK 465 ASP X 1553 REMARK 465 LEU X 1554 REMARK 465 THR X 1555 REMARK 465 SER X 1556 REMARK 465 ASP X 1557 REMARK 465 LEU X 1558 REMARK 465 LEU X 1559 REMARK 465 GLY X 1758 REMARK 465 PRO X 1759 REMARK 465 GLY X 1760 REMARK 465 ALA X 1761 REMARK 465 GLY X 1762 REMARK 465 GLU X 1763 REMARK 465 LYS X 1855 REMARK 465 HIS X 1856 REMARK 465 VAL X 1857 REMARK 465 LEU X 1858 REMARK 465 ARG X 1859 REMARK 465 GLU X 1860 REMARK 465 ASN X 1861 REMARK 465 GLN X 1862 REMARK 465 ASP X 1863 REMARK 465 TYR X 1864 REMARK 465 VAL X 1865 REMARK 465 PRO X 1866 REMARK 465 GLY X 1867 REMARK 465 GLU X 1868 REMARK 465 ARG X 1869 REMARK 465 THR X 1870 REMARK 465 PRO X 1871 REMARK 465 MET X 1872 REMARK 465 LEU X 1873 REMARK 465 GLU X 1874 REMARK 465 ASP X 1875 REMARK 465 VAL X 1876 REMARK 465 ASP X 1877 REMARK 465 GLU X 1878 REMARK 465 GLY X 1879 REMARK 465 ASN X 2130 REMARK 465 LYS X 2131 REMARK 465 VAL X 2132 REMARK 465 THR X 2133 REMARK 465 ASP X 2134 REMARK 465 LEU X 2135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU X2108 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER X 1980 CB ARG X 1984 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA X1669 CB - CA - C ANGL. DEV. = -10.0 DEGREES REMARK 500 SER X1980 CB - CA - C ANGL. DEV. = 24.0 DEGREES REMARK 500 SER X1980 N - CA - C ANGL. DEV. = -22.4 DEGREES REMARK 500 LEU X2027 CB - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 37 53.22 -158.27 REMARK 500 LYS A 96 -55.92 -124.01 REMARK 500 LYS A 116 69.79 62.72 REMARK 500 ARG X1581 -45.91 74.08 REMARK 500 HIS X1586 74.77 -100.73 REMARK 500 LYS X1670 -130.16 -106.24 REMARK 500 ARG X1678 -167.64 -127.51 REMARK 500 VAL X1726 -71.20 -82.99 REMARK 500 HIS X1885 -74.18 -122.53 REMARK 500 PRO X1893 38.43 -84.07 REMARK 500 ARG X1904 -66.51 61.65 REMARK 500 ARG X1908 -58.08 66.28 REMARK 500 ASP X1969 108.02 -56.35 REMARK 500 SER X1980 -92.26 -92.52 REMARK 500 PHE X1985 -72.75 -106.74 REMARK 500 LEU X2027 155.04 82.77 REMARK 500 ARG X2029 -111.21 45.41 REMARK 500 ASP X2030 -1.21 -57.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER X 1980 LEU X 1981 -149.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 THR A 35 OG1 95.5 REMARK 620 3 GNP A 200 O2G 141.7 92.3 REMARK 620 4 GNP A 200 O2B 77.6 151.8 78.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SUA RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 S1625T CONFLICT IN UNP ENTRY O43157 DBREF 3SU8 A 1 177 UNP P63000 RAC1_HUMAN 1 177 DBREF 3SU8 X 1533 2135 UNP O43157 PLXB1_HUMAN 1533 2135 SEQADV 3SU8 LYS A 178 UNP P63000 EXPRESSION TAG SEQADV 3SU8 HIS A 179 UNP P63000 EXPRESSION TAG SEQADV 3SU8 HIS A 180 UNP P63000 EXPRESSION TAG SEQADV 3SU8 HIS A 181 UNP P63000 EXPRESSION TAG SEQADV 3SU8 HIS A 182 UNP P63000 EXPRESSION TAG SEQADV 3SU8 HIS A 183 UNP P63000 EXPRESSION TAG SEQADV 3SU8 HIS A 184 UNP P63000 EXPRESSION TAG SEQADV 3SU8 MET X 1525 UNP O43157 EXPRESSION TAG SEQADV 3SU8 GLY X 1526 UNP O43157 EXPRESSION TAG SEQADV 3SU8 HIS X 1527 UNP O43157 EXPRESSION TAG SEQADV 3SU8 HIS X 1528 UNP O43157 EXPRESSION TAG SEQADV 3SU8 HIS X 1529 UNP O43157 EXPRESSION TAG SEQADV 3SU8 HIS X 1530 UNP O43157 EXPRESSION TAG SEQADV 3SU8 HIS X 1531 UNP O43157 EXPRESSION TAG SEQADV 3SU8 HIS X 1532 UNP O43157 EXPRESSION TAG SEQADV 3SU8 THR X 1625 UNP O43157 SER 1625 SEE REMARK 999 SEQRES 1 A 184 MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 A 184 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 A 184 ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP ASN SEQRES 4 A 184 TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL ASN SEQRES 5 A 184 LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 A 184 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 A 184 LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE GLU SEQRES 8 A 184 ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS HIS SEQRES 9 A 184 CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS LEU SEQRES 10 A 184 ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU LYS SEQRES 11 A 184 GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY LEU SEQRES 12 A 184 ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU GLU SEQRES 13 A 184 CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL PHE SEQRES 14 A 184 ASP GLU ALA ILE ARG ALA VAL LEU LYS HIS HIS HIS HIS SEQRES 15 A 184 HIS HIS SEQRES 1 X 611 MET GLY HIS HIS HIS HIS HIS HIS GLU SER SER VAL ARG SEQRES 2 X 611 ASP ARG CYS LYS LYS GLU PHE THR ASP LEU MET THR GLU SEQRES 3 X 611 MET THR ASP LEU THR SER ASP LEU LEU GLY SER GLY ILE SEQRES 4 X 611 PRO PHE LEU ASP TYR LYS VAL TYR ALA GLU ARG ILE PHE SEQRES 5 X 611 PHE PRO GLY HIS ARG GLU SER PRO LEU HIS ARG ASP LEU SEQRES 6 X 611 GLY VAL PRO GLU SER ARG ARG PRO THR VAL GLU GLN GLY SEQRES 7 X 611 LEU GLY GLN LEU SER ASN LEU LEU ASN SER LYS LEU PHE SEQRES 8 X 611 LEU THR LYS PHE ILE HIS THR LEU GLU THR GLN ARG THR SEQRES 9 X 611 PHE SER ALA ARG ASP ARG ALA TYR VAL ALA SER LEU LEU SEQRES 10 X 611 THR VAL ALA LEU HIS GLY LYS LEU GLU TYR PHE THR ASP SEQRES 11 X 611 ILE LEU ARG THR LEU LEU SER ASP LEU VAL ALA GLN TYR SEQRES 12 X 611 VAL ALA LYS ASN PRO LYS LEU MET LEU ARG ARG THR GLU SEQRES 13 X 611 THR VAL VAL GLU LYS LEU LEU THR ASN TRP MET SER ILE SEQRES 14 X 611 CYS LEU TYR THR PHE VAL ARG ASP SER VAL GLY GLU PRO SEQRES 15 X 611 LEU TYR MET LEU PHE ARG GLY ILE LYS HIS GLN VAL ASP SEQRES 16 X 611 LYS GLY PRO VAL ASP SER VAL THR GLY LYS ALA LYS TYR SEQRES 17 X 611 THR LEU ASN ASP ASN ARG LEU LEU ARG GLU ASP VAL GLU SEQRES 18 X 611 TYR ARG PRO LEU THR LEU ASN ALA LEU LEU ALA VAL GLY SEQRES 19 X 611 PRO GLY ALA GLY GLU ALA GLN GLY VAL PRO VAL LYS VAL SEQRES 20 X 611 LEU ASP CYS ASP THR ILE SER GLN ALA LYS GLU LYS MET SEQRES 21 X 611 LEU ASP GLN LEU TYR LYS GLY VAL PRO LEU THR GLN ARG SEQRES 22 X 611 PRO ASP PRO ARG THR LEU ASP VAL GLU TRP ARG SER GLY SEQRES 23 X 611 VAL ALA GLY HIS LEU ILE LEU SER ASP GLU ASP VAL THR SEQRES 24 X 611 SER GLU VAL GLN GLY LEU TRP ARG ARG LEU ASN THR LEU SEQRES 25 X 611 GLN HIS TYR LYS VAL PRO ASP GLY ALA THR VAL ALA LEU SEQRES 26 X 611 VAL PRO CYS LEU THR LYS HIS VAL LEU ARG GLU ASN GLN SEQRES 27 X 611 ASP TYR VAL PRO GLY GLU ARG THR PRO MET LEU GLU ASP SEQRES 28 X 611 VAL ASP GLU GLY GLY ILE ARG PRO TRP HIS LEU VAL LYS SEQRES 29 X 611 PRO SER ASP GLU PRO GLU PRO PRO ARG PRO ARG ARG GLY SEQRES 30 X 611 SER LEU ARG GLY GLY GLU ARG GLU ARG ALA LYS ALA ILE SEQRES 31 X 611 PRO GLU ILE TYR LEU THR ARG LEU LEU SER MET LYS GLY SEQRES 32 X 611 THR LEU GLN LYS PHE VAL ASP ASP LEU PHE GLN VAL ILE SEQRES 33 X 611 LEU SER THR SER ARG PRO VAL PRO LEU ALA VAL LYS TYR SEQRES 34 X 611 PHE PHE ASP LEU LEU ASP GLU GLN ALA GLN GLN HIS GLY SEQRES 35 X 611 ILE SER ASP GLN ASP THR ILE HIS ILE TRP LYS THR ASN SEQRES 36 X 611 SER LEU PRO LEU ARG PHE TRP ILE ASN ILE ILE LYS ASN SEQRES 37 X 611 PRO GLN PHE VAL PHE ASP VAL GLN THR SER ASP ASN MET SEQRES 38 X 611 ASP ALA VAL LEU LEU VAL ILE ALA GLN THR PHE MET ASP SEQRES 39 X 611 ALA CYS THR LEU ALA ASP HIS LYS LEU GLY ARG ASP SER SEQRES 40 X 611 PRO ILE ASN LYS LEU LEU TYR ALA ARG ASP ILE PRO ARG SEQRES 41 X 611 TYR LYS ARG MET VAL GLU ARG TYR TYR ALA ASP ILE ARG SEQRES 42 X 611 GLN THR VAL PRO ALA SER ASP GLN GLU MET ASN SER VAL SEQRES 43 X 611 LEU ALA GLU LEU SER TRP ASN TYR SER GLY ASP LEU GLY SEQRES 44 X 611 ALA ARG VAL ALA LEU HIS GLU LEU TYR LYS TYR ILE ASN SEQRES 45 X 611 LYS TYR TYR ASP GLN ILE ILE THR ALA LEU GLU GLU ASP SEQRES 46 X 611 GLY THR ALA GLN LYS MET GLN LEU GLY TYR ARG LEU GLN SEQRES 47 X 611 GLN ILE ALA ALA ALA VAL GLU ASN LYS VAL THR ASP LEU HET MG A 201 1 HET GNP A 200 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 3 MG MG 2+ FORMUL 4 GNP C10 H17 N6 O13 P3 HELIX 1 1 GLY A 15 THR A 25 1 11 HELIX 2 2 GLN A 61 ASP A 65 5 5 HELIX 3 3 LEU A 67 SER A 71 5 5 HELIX 4 4 SER A 86 LYS A 96 1 11 HELIX 5 5 LYS A 96 CYS A 105 1 10 HELIX 6 6 ASP A 122 LYS A 132 1 11 HELIX 7 7 THR A 138 ILE A 149 1 12 HELIX 8 8 GLY A 164 LYS A 178 1 15 HELIX 9 9 ASP X 1567 PHE X 1577 1 11 HELIX 10 10 ARG X 1595 ASN X 1611 1 17 HELIX 11 11 SER X 1612 THR X 1625 1 14 HELIX 12 12 SER X 1630 LEU X 1645 1 16 HELIX 13 13 LYS X 1648 LYS X 1670 1 23 HELIX 14 14 ASN X 1671 MET X 1675 5 5 HELIX 15 15 THR X 1681 SER X 1702 1 22 HELIX 16 16 VAL X 1703 ASP X 1719 1 17 HELIX 17 17 ASN X 1735 LEU X 1739 5 5 HELIX 18 18 THR X 1776 TYR X 1789 1 14 HELIX 19 19 ASP X 1799 ARG X 1801 5 3 HELIX 20 20 THR X 1835 LYS X 1840 1 6 HELIX 21 21 PRO X 1915 LEU X 1929 1 15 HELIX 22 22 LEU X 1929 LEU X 1941 1 13 HELIX 23 23 PRO X 1948 HIS X 1965 1 18 HELIX 24 24 ASP X 1969 ASN X 1979 1 11 HELIX 25 25 PHE X 1985 ASN X 1992 1 8 HELIX 26 26 PRO X 1993 VAL X 1996 5 4 HELIX 27 27 SER X 2002 THR X 2021 1 20 HELIX 28 28 PRO X 2032 TYR X 2038 1 7 HELIX 29 29 ASP X 2041 THR X 2059 1 19 HELIX 30 30 SER X 2063 TYR X 2078 1 16 HELIX 31 31 GLY X 2083 TYR X 2098 1 16 HELIX 32 32 TYR X 2098 ASP X 2109 1 12 HELIX 33 33 ASP X 2109 GLN X 2116 1 8 HELIX 34 34 GLN X 2116 GLU X 2129 1 14 SHEET 1 A 6 ASN A 39 VAL A 46 0 SHEET 2 A 6 LYS A 49 ASP A 57 -1 O LEU A 55 N TYR A 40 SHEET 3 A 6 GLN A 2 GLY A 10 1 N ILE A 4 O GLY A 54 SHEET 4 A 6 VAL A 77 SER A 83 1 O CYS A 81 N VAL A 9 SHEET 5 A 6 ILE A 110 THR A 115 1 O VAL A 113 N ILE A 80 SHEET 6 A 6 LYS A 153 GLU A 156 1 O LEU A 155 N GLY A 114 SHEET 1 B 5 VAL X1767 LEU X1772 0 SHEET 2 B 5 PRO X1748 LEU X1755 -1 N LEU X1749 O VAL X1771 SHEET 3 B 5 THR X1846 PRO X1851 1 O VAL X1847 N ASN X1752 SHEET 4 B 5 LEU X1803 ARG X1808 -1 N ASP X1804 O VAL X1850 SHEET 5 B 5 LEU X1815 LEU X1817 -1 O LEU X1817 N VAL X1805 SHEET 1 C 3 GLU X1825 GLN X1827 0 SHEET 2 C 3 TRP X1830 ARG X1832 -1 O ARG X1832 N GLU X1825 SHEET 3 C 3 ARG X1882 TRP X1884 1 O TRP X1884 N ARG X1831 LINK OG1 THR A 17 MG MG A 201 1555 1555 1.95 LINK OG1 THR A 35 MG MG A 201 1555 1555 2.00 LINK O2G GNP A 200 MG MG A 201 1555 1555 2.17 LINK O2B GNP A 200 MG MG A 201 1555 1555 2.35 SITE 1 AC1 4 THR A 17 THR A 35 ASP A 57 GNP A 200 SITE 1 AC2 23 ASP A 11 GLY A 12 ALA A 13 VAL A 14 SITE 2 AC2 23 GLY A 15 LYS A 16 THR A 17 CYS A 18 SITE 3 AC2 23 PHE A 28 GLY A 30 TYR A 32 PRO A 34 SITE 4 AC2 23 THR A 35 THR A 58 GLY A 60 GLN A 61 SITE 5 AC2 23 LYS A 116 ASP A 118 LEU A 119 SER A 158 SITE 6 AC2 23 ALA A 159 LEU A 160 MG A 201 CRYST1 183.450 63.810 84.550 90.00 107.53 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005451 0.000000 0.001722 0.00000 SCALE2 0.000000 0.015672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012403 0.00000