HEADER HYDROLASE/INHIBITOR 11-JUL-11 3SUG TITLE CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT A156T IN COMPLEX WITH MK- TITLE 2 5172 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 PROTEASE, NS4A PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NS4A (UNP RESIDUES 1674-1688), NS3 (UNP RESIDUES 1027- COMPND 5 1208); COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 31646; SOURCE 4 STRAIN: SUBTYPE 1A, BID-V318; SOURCE 5 GENE: NS3-NS4A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DRUG RESISTANCE, DRUG DESIGN, PROTEASE INHIBITORS, HCV, SERINE KEYWDS 2 PROTEASE, VIRAL PROTEIN, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.SCHIFFER,K.P.ROMANO REVDAT 5 28-FEB-24 3SUG 1 COMPND REMARK HETNAM LINK REVDAT 4 11-DEC-19 3SUG 1 SEQADV HETSYN REVDAT 3 08-NOV-17 3SUG 1 REMARK REVDAT 2 23-AUG-17 3SUG 1 SOURCE REMARK REVDAT 1 19-SEP-12 3SUG 0 JRNL AUTH K.P.ROMANO,A.ALI,C.AYDIN,D.SOUMANA,A.OZEN,L.M.DEVEAU, JRNL AUTH 2 C.SILVER,H.CAO,A.NEWTON,C.J.PETROPOULOS,W.HUANG,C.A.SCHIFFER JRNL TITL THE MOLECULAR BASIS OF DRUG RESISTANCE AGAINST HEPATITIS C JRNL TITL 2 VIRUS NS3/4A PROTEASE INHIBITORS. JRNL REF PLOS PATHOG. V. 8 02832 2012 JRNL REFN ISSN 1553-7366 JRNL PMID 22910833 JRNL DOI 10.1371/JOURNAL.PPAT.1002832 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 15964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 859 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1066 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : -2.71000 REMARK 3 B33 (A**2) : 2.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.347 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1537 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1003 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2106 ; 1.459 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2455 ; 1.354 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 202 ; 6.626 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;32.295 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 225 ;12.728 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.510 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 252 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1706 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 299 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1001 ; 0.701 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 416 ; 0.171 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1611 ; 1.197 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 536 ; 1.657 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 485 ; 2.644 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 981 A 989 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3653 -20.4022 2.2835 REMARK 3 T TENSOR REMARK 3 T11: 0.4129 T22: 0.5529 REMARK 3 T33: 0.1901 T12: -0.0969 REMARK 3 T13: 0.0838 T23: 0.0586 REMARK 3 L TENSOR REMARK 3 L11: 9.8844 L22: 1.1902 REMARK 3 L33: 1.0524 L12: 2.6358 REMARK 3 L13: 0.8499 L23: 0.9033 REMARK 3 S TENSOR REMARK 3 S11: 0.3398 S12: -1.0420 S13: 0.0738 REMARK 3 S21: 0.0422 S22: -0.5884 S23: 0.1652 REMARK 3 S31: -0.0692 S32: -0.3867 S33: 0.2487 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 990 A 997 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3249 -4.4435 -16.5129 REMARK 3 T TENSOR REMARK 3 T11: 0.1559 T22: 0.1886 REMARK 3 T33: 0.1599 T12: 0.0003 REMARK 3 T13: -0.0085 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 3.1808 L22: 7.5202 REMARK 3 L33: 1.0307 L12: 1.4987 REMARK 3 L13: -1.7759 L23: -1.3534 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: 0.0647 S13: 0.0030 REMARK 3 S21: 0.0170 S22: -0.0356 S23: 0.1859 REMARK 3 S31: -0.0270 S32: -0.0318 S33: -0.0118 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 998 A 1010 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3238 6.5397 -25.8848 REMARK 3 T TENSOR REMARK 3 T11: 0.2653 T22: 0.1953 REMARK 3 T33: 0.1903 T12: 0.0179 REMARK 3 T13: -0.0143 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 2.4278 L22: 0.3597 REMARK 3 L33: 3.9189 L12: -0.2388 REMARK 3 L13: -1.4622 L23: -0.4104 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: 0.2666 S13: 0.1582 REMARK 3 S21: -0.2155 S22: -0.1030 S23: 0.0186 REMARK 3 S31: -0.2075 S32: -0.0123 S33: 0.0220 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1011 A 1018 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9154 -1.0383 -9.3112 REMARK 3 T TENSOR REMARK 3 T11: 0.2362 T22: 0.1891 REMARK 3 T33: 0.1761 T12: -0.0034 REMARK 3 T13: 0.0212 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 5.3912 L22: 7.3052 REMARK 3 L33: 1.8232 L12: 5.7983 REMARK 3 L13: -2.1778 L23: -2.6964 REMARK 3 S TENSOR REMARK 3 S11: -0.1492 S12: -0.0559 S13: 0.2152 REMARK 3 S21: 0.2857 S22: 0.0749 S23: 0.1522 REMARK 3 S31: -0.0697 S32: 0.0099 S33: 0.0742 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1019 A 1027 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3461 -7.3280 -13.2362 REMARK 3 T TENSOR REMARK 3 T11: 0.1645 T22: 0.1728 REMARK 3 T33: 0.2155 T12: -0.0090 REMARK 3 T13: 0.0509 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 5.6195 L22: 2.9887 REMARK 3 L33: 12.0145 L12: -0.8079 REMARK 3 L13: 0.5369 L23: -4.1182 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: 0.1115 S13: 0.0839 REMARK 3 S21: 0.2388 S22: 0.0810 S23: 0.3412 REMARK 3 S31: -0.1010 S32: -0.4273 S33: -0.0470 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1028 A 1034 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7159 -1.8728 -25.8957 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.1752 REMARK 3 T33: 0.3109 T12: 0.0216 REMARK 3 T13: -0.0173 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 6.8896 L22: 3.0514 REMARK 3 L33: 1.9577 L12: -2.9547 REMARK 3 L13: 0.0312 L23: 1.6732 REMARK 3 S TENSOR REMARK 3 S11: 0.1481 S12: 0.0888 S13: 0.3194 REMARK 3 S21: -0.2432 S22: -0.1797 S23: 0.2092 REMARK 3 S31: -0.1865 S32: -0.1030 S33: 0.0316 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1035 A 1042 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7651 -5.1705 -11.9336 REMARK 3 T TENSOR REMARK 3 T11: 0.2320 T22: 0.1829 REMARK 3 T33: 0.1864 T12: 0.0227 REMARK 3 T13: -0.0313 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 2.1648 L22: 2.9935 REMARK 3 L33: 8.9408 L12: 0.4905 REMARK 3 L13: 1.6706 L23: -1.7301 REMARK 3 S TENSOR REMARK 3 S11: 0.1900 S12: -0.1980 S13: -0.1976 REMARK 3 S21: 0.2911 S22: 0.1207 S23: -0.1492 REMARK 3 S31: 0.2101 S32: 0.1391 S33: -0.3107 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1043 A 1061 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7935 -11.5168 -21.9019 REMARK 3 T TENSOR REMARK 3 T11: 0.1594 T22: 0.1695 REMARK 3 T33: 0.1646 T12: -0.0005 REMARK 3 T13: -0.0056 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.3702 L22: 1.5010 REMARK 3 L33: 0.6476 L12: -0.1085 REMARK 3 L13: 0.2016 L23: -0.6071 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: 0.0590 S13: -0.0047 REMARK 3 S21: -0.0267 S22: -0.0182 S23: 0.0385 REMARK 3 S31: -0.0190 S32: 0.0109 S33: 0.0013 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1062 A 1084 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4337 -16.6134 -19.3108 REMARK 3 T TENSOR REMARK 3 T11: 0.1573 T22: 0.1696 REMARK 3 T33: 0.1683 T12: -0.0121 REMARK 3 T13: -0.0098 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.4752 L22: 1.6773 REMARK 3 L33: 0.6849 L12: -1.0915 REMARK 3 L13: -0.8094 L23: 0.2041 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: 0.0926 S13: -0.1205 REMARK 3 S21: -0.0279 S22: -0.0766 S23: 0.1014 REMARK 3 S31: 0.0404 S32: -0.0502 S33: 0.0486 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1085 A 1092 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9658 -10.2280 -25.8883 REMARK 3 T TENSOR REMARK 3 T11: 0.1720 T22: 0.1875 REMARK 3 T33: 0.2639 T12: 0.0006 REMARK 3 T13: -0.0827 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.6761 L22: 4.2657 REMARK 3 L33: 6.1618 L12: -2.9095 REMARK 3 L13: 0.0811 L23: -2.6938 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: 0.1318 S13: -0.0695 REMARK 3 S21: 0.0625 S22: 0.0537 S23: 0.0784 REMARK 3 S31: -0.0377 S32: -0.4712 S33: -0.0156 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1093 A 1105 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3923 -5.9124 -37.0095 REMARK 3 T TENSOR REMARK 3 T11: 0.3697 T22: 0.3201 REMARK 3 T33: 0.3306 T12: -0.1341 REMARK 3 T13: -0.1001 T23: 0.2398 REMARK 3 L TENSOR REMARK 3 L11: 8.5355 L22: 0.0585 REMARK 3 L33: 2.5998 L12: 0.3592 REMARK 3 L13: -4.3891 L23: -0.0705 REMARK 3 S TENSOR REMARK 3 S11: -0.2210 S12: 1.1419 S13: 0.3769 REMARK 3 S21: -0.1282 S22: 0.1278 S23: 0.0808 REMARK 3 S31: -0.1500 S32: -0.3935 S33: 0.0932 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1106 A 1110 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4970 1.8860 -21.6690 REMARK 3 T TENSOR REMARK 3 T11: 0.2010 T22: 0.1146 REMARK 3 T33: 0.4902 T12: -0.0077 REMARK 3 T13: -0.1477 T23: -0.1132 REMARK 3 L TENSOR REMARK 3 L11: 4.2499 L22: 11.8881 REMARK 3 L33: 21.6784 L12: -5.9367 REMARK 3 L13: -3.6921 L23: 13.2653 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.2188 S13: 0.5154 REMARK 3 S21: 0.5399 S22: -0.0370 S23: -0.6345 REMARK 3 S31: 0.9598 S32: -0.7366 S33: 0.0550 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1111 A 1116 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2810 3.5246 -27.3068 REMARK 3 T TENSOR REMARK 3 T11: 0.1701 T22: 0.1562 REMARK 3 T33: 0.4675 T12: -0.0457 REMARK 3 T13: 0.0779 T23: 0.1054 REMARK 3 L TENSOR REMARK 3 L11: 8.6056 L22: 2.0310 REMARK 3 L33: 5.6233 L12: -4.1741 REMARK 3 L13: -6.9467 L23: 3.3738 REMARK 3 S TENSOR REMARK 3 S11: 0.3340 S12: -0.3577 S13: 0.7120 REMARK 3 S21: -0.1861 S22: 0.1677 S23: -0.3401 REMARK 3 S31: -0.2789 S32: 0.3155 S33: -0.5017 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1117 A 1129 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3339 -5.0510 -29.3547 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.2739 REMARK 3 T33: 0.1774 T12: -0.0189 REMARK 3 T13: 0.0431 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 4.2547 L22: 4.9013 REMARK 3 L33: 2.3495 L12: 1.6191 REMARK 3 L13: -1.4001 L23: 2.2759 REMARK 3 S TENSOR REMARK 3 S11: 0.1027 S12: -0.0622 S13: 0.3222 REMARK 3 S21: 0.0431 S22: 0.0880 S23: -0.0044 REMARK 3 S31: -0.0417 S32: 0.2124 S33: -0.1907 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1130 A 1138 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2302 1.6237 -17.0936 REMARK 3 T TENSOR REMARK 3 T11: 0.2114 T22: 0.3472 REMARK 3 T33: 0.4505 T12: -0.0615 REMARK 3 T13: -0.0471 T23: -0.1300 REMARK 3 L TENSOR REMARK 3 L11: 22.5161 L22: 2.8816 REMARK 3 L33: 0.6457 L12: 7.8009 REMARK 3 L13: -0.7751 L23: 0.0285 REMARK 3 S TENSOR REMARK 3 S11: 0.2468 S12: -0.2999 S13: 1.5304 REMARK 3 S21: 0.1136 S22: 0.1403 S23: 0.4008 REMARK 3 S31: 0.1699 S32: 0.3094 S33: -0.3871 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1139 A 1148 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0930 -3.5266 -31.4019 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.2318 REMARK 3 T33: 0.4880 T12: 0.0154 REMARK 3 T13: -0.0575 T23: 0.1290 REMARK 3 L TENSOR REMARK 3 L11: 0.5541 L22: 0.6265 REMARK 3 L33: 11.1975 L12: -0.5550 REMARK 3 L13: -2.3607 L23: 2.6465 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: 0.0800 S13: 0.1504 REMARK 3 S21: -0.1327 S22: -0.0824 S23: 0.0184 REMARK 3 S31: -0.5806 S32: -0.2505 S33: 0.0219 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1149 A 1157 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5367 -8.2332 -26.9457 REMARK 3 T TENSOR REMARK 3 T11: 0.1845 T22: 0.2045 REMARK 3 T33: 0.2298 T12: 0.0125 REMARK 3 T13: 0.0440 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 4.9091 L22: 1.3306 REMARK 3 L33: 6.3689 L12: 2.4063 REMARK 3 L13: 0.6544 L23: 1.2685 REMARK 3 S TENSOR REMARK 3 S11: 0.1305 S12: 0.0857 S13: 0.2052 REMARK 3 S21: 0.0744 S22: 0.0185 S23: 0.0368 REMARK 3 S31: 0.2506 S32: -0.0985 S33: -0.1491 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1158 A 1166 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2518 -2.2852 -17.8199 REMARK 3 T TENSOR REMARK 3 T11: 0.2094 T22: 0.3998 REMARK 3 T33: 0.3530 T12: -0.0208 REMARK 3 T13: 0.0164 T23: -0.1706 REMARK 3 L TENSOR REMARK 3 L11: 1.8312 L22: 0.3987 REMARK 3 L33: 16.7430 L12: -0.7337 REMARK 3 L13: 3.6369 L23: -0.6041 REMARK 3 S TENSOR REMARK 3 S11: -0.1967 S12: -0.4062 S13: 0.2907 REMARK 3 S21: 0.0677 S22: 0.3379 S23: -0.2375 REMARK 3 S31: 0.1199 S32: 0.4392 S33: -0.1412 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1167 A 1175 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4535 -12.8275 -28.7457 REMARK 3 T TENSOR REMARK 3 T11: 0.1978 T22: 0.2045 REMARK 3 T33: 0.1629 T12: 0.0279 REMARK 3 T13: 0.0161 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 6.9353 L22: 1.9797 REMARK 3 L33: 3.9653 L12: 1.8032 REMARK 3 L13: 3.1046 L23: 2.4123 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: 0.3031 S13: -0.1710 REMARK 3 S21: -0.1793 S22: -0.0862 S23: -0.1072 REMARK 3 S31: 0.1042 S32: 0.1437 S33: 0.0416 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1176 A 1181 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3813 -21.2568 -31.8615 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.1380 REMARK 3 T33: 0.1923 T12: 0.0304 REMARK 3 T13: 0.0676 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 13.7823 L22: 1.1339 REMARK 3 L33: 12.2938 L12: 2.6347 REMARK 3 L13: -1.3180 L23: 2.5174 REMARK 3 S TENSOR REMARK 3 S11: -0.2014 S12: 0.3091 S13: -0.7330 REMARK 3 S21: 0.1157 S22: 0.0029 S23: -0.1115 REMARK 3 S31: 0.6954 S32: -0.2852 S33: 0.1985 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000066665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16890 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-25% PEG 3350, 0.1M MES (PH 6.5), 4% REMARK 280 AMMONIUM SULFATE, HANGING DROP, VAPOR DIFFUSION, TEMPERATURE REMARK 280 295K, PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.94150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.01300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.12400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.01300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.94150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.12400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 980 REMARK 465 PRO A 1182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 988 CG CD CE NZ REMARK 470 GLU A1013 CG CD OE1 OE2 REMARK 470 GLU A1014 CG CD OE1 OE2 REMARK 470 GLN A1017 CG CD OE1 NE2 REMARK 470 GLU A1018 CG CD OE1 OE2 REMARK 470 GLN A1021 CG CD OE1 NE2 REMARK 470 LYS A1026 CG CD CE NZ REMARK 470 GLN A1028 CG CD OE1 NE2 REMARK 470 ARG A1092 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1161 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1180 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A1145 CA - CB - SG ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 982 105.50 49.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 MK-5172 IS A MACROCYCLIC, PEPTIDOMIMETIC HCV NS3/4A PROTEASE REMARK 600 INHIBITOR FROM MERCK. THE DRUG MIMICS THE PEPTIDE BACKBONE OF REMARK 600 PROTEINS, ALTHOUGH THE DRUG MOIETIES CANNOT BE SEQUENCED USING REMARK 600 AMINO ACID NOMENCLATURE. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1097 SG REMARK 620 2 CYS A1099 SG 111.6 REMARK 620 3 CYS A1145 SG 113.1 111.8 REMARK 620 4 HIS A1149 ND1 128.8 104.5 83.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SUE A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SU3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH VANIPREVIR REMARK 900 RELATED ID: 3SU4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT R155K IN COMPLEX WITH REMARK 900 VANIPREVIR REMARK 900 RELATED ID: 3SU5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT D168A IN COMPLEX WITH REMARK 900 VANIPREVIR REMARK 900 RELATED ID: 3SU6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT A156T IN COMPLEX WITH REMARK 900 VANIPREVIR REMARK 900 RELATED ID: 3SUD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH MK-5172 REMARK 900 RELATED ID: 3SUE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT R155K IN COMPLEX WITH REMARK 900 MK-5172 REMARK 900 RELATED ID: 3SUF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT D168A IN COMPLEX WITH REMARK 900 MK-5172 REMARK 900 RELATED ID: 3SV6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH TELAPREVIR REMARK 900 RELATED ID: 3SV7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT R155K IN COMPLEX WITH REMARK 900 TELAPREVIR REMARK 900 RELATED ID: 3SV8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT D168A IN COMPLEX WITH REMARK 900 TELAPREVIR REMARK 900 RELATED ID: 3SV9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT A156T IN COMPLEX WITH REMARK 900 TELAPREVIR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE COFACTOR 4A RESIDUES 990-1000 (GLY SER VAL VAL ILE VAL GLY ARG REMARK 999 ILE ASN LEU) IN THIS ENTRY CORRESPOND TO RESIDUES NUMBERING 1678- REMARK 999 1688 OF DATABASE SEQUENCE REFERENCE (UNP A8DG50). THIS PEPTIDE IS REMARK 999 COVALENTLY LINKED TO THE N-TERMINUS OF NS3. C1679S MUTATION WAS REMARK 999 ENGINEERED TO PREVENT DISULFIDE FORMATION. THE V1686I AND I1687N REMARK 999 WERE ENGINEERED TO OPTIMIZE THE LINKER BETWEEN THE COFACTOR 4A AND REMARK 999 NS3. DBREF 3SUG A 986 1000 UNP A8DG50 A8DG50_9HEPC 1674 1688 DBREF 3SUG A 1001 1182 UNP A8DG50 A8DG50_9HEPC 1027 1208 SEQADV 3SUG GLY A 980 UNP A8DG50 EXPRESSION TAG SEQADV 3SUG SER A 981 UNP A8DG50 EXPRESSION TAG SEQADV 3SUG HIS A 982 UNP A8DG50 EXPRESSION TAG SEQADV 3SUG MET A 983 UNP A8DG50 EXPRESSION TAG SEQADV 3SUG ALA A 984 UNP A8DG50 EXPRESSION TAG SEQADV 3SUG SER A 985 UNP A8DG50 EXPRESSION TAG SEQADV 3SUG MET A 986 UNP A8DG50 CYS 1674 ENGINEERED MUTATION SEQADV 3SUG LYS A 987 UNP A8DG50 LEU 1675 ENGINEERED MUTATION SEQADV 3SUG LYS A 988 UNP A8DG50 SER 1676 ENGINEERED MUTATION SEQADV 3SUG LYS A 989 UNP A8DG50 THR 1677 ENGINEERED MUTATION SEQADV 3SUG SER A 991 UNP A8DG50 CYS 1679 SEE REMARK 999 SEQADV 3SUG ILE A 998 UNP A8DG50 VAL 1686 SEE REMARK 999 SEQADV 3SUG ASN A 999 UNP A8DG50 ILE 1687 SEE REMARK 999 SEQADV 3SUG SER A 1001 UNP A8DG50 ALA 1027 ENGINEERED MUTATION SEQADV 3SUG GLY A 1002 UNP A8DG50 PRO 1028 ENGINEERED MUTATION SEQADV 3SUG ASP A 1003 UNP A8DG50 ILE 1029 ENGINEERED MUTATION SEQADV 3SUG GLU A 1013 UNP A8DG50 LEU 1039 ENGINEERED MUTATION SEQADV 3SUG GLU A 1014 UNP A8DG50 LEU 1040 ENGINEERED MUTATION SEQADV 3SUG GLN A 1017 UNP A8DG50 ILE 1043 ENGINEERED MUTATION SEQADV 3SUG GLU A 1018 UNP A8DG50 ILE 1044 ENGINEERED MUTATION SEQADV 3SUG GLN A 1021 UNP A8DG50 LEU 1047 ENGINEERED MUTATION SEQADV 3SUG THR A 1040 UNP A8DG50 ALA 1066 ENGINEERED MUTATION SEQADV 3SUG SER A 1047 UNP A8DG50 CYS 1073 ENGINEERED MUTATION SEQADV 3SUG LEU A 1052 UNP A8DG50 CYS 1078 ENGINEERED MUTATION SEQADV 3SUG THR A 1072 UNP A8DG50 ILE 1098 ENGINEERED MUTATION SEQADV 3SUG GLN A 1086 UNP A8DG50 PRO 1112 ENGINEERED MUTATION SEQADV 3SUG ALA A 1139 UNP A8DG50 SER 1165 ENGINEERED MUTATION SEQADV 3SUG THR A 1156 UNP A8DG50 ALA 1182 ENGINEERED MUTATION SEQADV 3SUG SER A 1159 UNP A8DG50 CYS 1185 ENGINEERED MUTATION SEQRES 1 A 203 GLY SER HIS MET ALA SER MET LYS LYS LYS GLY SER VAL SEQRES 2 A 203 VAL ILE VAL GLY ARG ILE ASN LEU SER GLY ASP THR ALA SEQRES 3 A 203 TYR ALA GLN GLN THR ARG GLY GLU GLU GLY CYS GLN GLU SEQRES 4 A 203 THR SER GLN THR GLY ARG ASP LYS ASN GLN VAL GLU GLY SEQRES 5 A 203 GLU VAL GLN ILE VAL SER THR ALA THR GLN THR PHE LEU SEQRES 6 A 203 ALA THR SER ILE ASN GLY VAL LEU TRP THR VAL TYR HIS SEQRES 7 A 203 GLY ALA GLY THR ARG THR ILE ALA SER PRO LYS GLY PRO SEQRES 8 A 203 VAL THR GLN MET TYR THR ASN VAL ASP LYS ASP LEU VAL SEQRES 9 A 203 GLY TRP GLN ALA PRO GLN GLY SER ARG SER LEU THR PRO SEQRES 10 A 203 CYS THR CYS GLY SER SER ASP LEU TYR LEU VAL THR ARG SEQRES 11 A 203 HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG GLY ASP SER SEQRES 12 A 203 ARG GLY SER LEU LEU SER PRO ARG PRO ILE SER TYR LEU SEQRES 13 A 203 LYS GLY SER ALA GLY GLY PRO LEU LEU CYS PRO ALA GLY SEQRES 14 A 203 HIS ALA VAL GLY ILE PHE ARG THR ALA VAL SER THR ARG SEQRES 15 A 203 GLY VAL ALA LYS ALA VAL ASP PHE ILE PRO VAL GLU SER SEQRES 16 A 203 LEU GLU THR THR MET ARG SER PRO HET SUE A1201 54 HET SO4 A1202 5 HET ZN A1203 1 HETNAM SUE (1AR,5S,8S,10R,22AR)-5-TERT-BUTYL-N-{(1R,2S)-1- HETNAM 2 SUE [(CYCLOPROPYLSULFONYL)CARBAMOYL]-2- HETNAM 3 SUE ETHENYLCYCLOPROPYL}-14-METHOXY-3,6-DI OXO-1,1A,3,4,5, HETNAM 4 SUE 6,9,10,18,19,20,21,22,22A-TETRADECAHYDRO-8H-7,10- HETNAM 5 SUE METHANOCYCLOPROPA[18,19][1,10,3, HETNAM 6 SUE 6]DIOXADIAZACYCLONONADEC INO[11,12-B]QUINOXALINE-8- HETNAM 7 SUE CARBOXAMIDE HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETSYN SUE GRAZOPREVIR, MK-5172 FORMUL 2 SUE C38 H50 N6 O9 S FORMUL 3 SO4 O4 S 2- FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *97(H2 O) HELIX 1 1 HIS A 982 MET A 986 5 5 HELIX 2 2 GLY A 1012 GLY A 1023 1 12 HELIX 3 3 VAL A 1055 GLY A 1060 1 6 HELIX 4 4 SER A 1133 LEU A 1135 5 3 HELIX 5 5 VAL A 1172 ARG A 1180 1 9 SHEET 1 A 7 TYR A1006 GLN A1009 0 SHEET 2 A 7 VAL A 993 ASN A 999 -1 N ASN A 999 O TYR A1006 SHEET 3 A 7 VAL A1033 SER A1037 -1 O ILE A1035 N VAL A 995 SHEET 4 A 7 THR A1042 ILE A1048 -1 O ALA A1045 N GLN A1034 SHEET 5 A 7 VAL A1051 THR A1054 -1 O TRP A1053 N THR A1046 SHEET 6 A 7 LEU A1082 GLN A1086 -1 O TRP A1085 N LEU A1052 SHEET 7 A 7 TYR A1075 ASN A1077 -1 N ASN A1077 O LEU A1082 SHEET 1 B 7 ASP A1103 VAL A1107 0 SHEET 2 B 7 VAL A1113 ARG A1118 -1 O ILE A1114 N LEU A1106 SHEET 3 B 7 ARG A1123 PRO A1131 -1 O SER A1125 N ARG A1117 SHEET 4 B 7 VAL A1163 PRO A1171 -1 O ALA A1164 N ARG A1130 SHEET 5 B 7 ALA A1150 THR A1160 -1 N THR A1156 O ASP A1168 SHEET 6 B 7 PRO A1142 LEU A1144 -1 N LEU A1143 O VAL A1151 SHEET 7 B 7 ASP A1103 VAL A1107 -1 N TYR A1105 O LEU A1144 LINK SG CYS A1097 ZN ZN A1203 1555 1555 2.27 LINK SG CYS A1099 ZN ZN A1203 1555 1555 2.47 LINK SG CYS A1145 ZN ZN A1203 1555 1555 2.10 LINK ND1 HIS A1149 ZN ZN A1203 1555 1555 2.33 SITE 1 AC1 17 GLN A1041 PHE A1043 TYR A1056 HIS A1057 SITE 2 AC1 17 GLY A1058 ILE A1132 LEU A1135 LYS A1136 SITE 3 AC1 17 GLY A1137 SER A1138 ALA A1139 PHE A1154 SITE 4 AC1 17 ARG A1155 THR A1156 ALA A1157 ASP A1168 SITE 5 AC1 17 SO4 A1202 SITE 1 AC2 7 TYR A1006 GLN A1008 TYR A1056 SUE A1201 SITE 2 AC2 7 HOH A1306 HOH A1318 HOH A1322 SITE 1 AC3 4 CYS A1097 CYS A1099 CYS A1145 HIS A1149 CRYST1 53.883 58.248 62.026 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018559 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016122 0.00000