HEADER VIRAL PROTEIN, HYDROLASE/INHIBITOR 12-JUL-11 3SV8 TITLE CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT D168A IN COMPLEX WITH TITLE 2 TELAPREVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 PROTEASE, NS4A PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NS4A (UNP RESIDUES 1674-1688), NS3 (UNP RESIDUES 1027- COMPND 5 1208); COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 31646; SOURCE 4 STRAIN: SUBTYPE 1A, BID-V318; SOURCE 5 GENE: NS3-NS4A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DRUG RESISTANCE, DRUG DESIGN, PROTEASE INHIBITORS, SERINE PROTEASE, KEYWDS 2 HYDROLASE, VIRAL PROTEIN, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.SCHIFFER,K.P.ROMANO REVDAT 3 08-NOV-17 3SV8 1 REMARK REVDAT 2 23-AUG-17 3SV8 1 SOURCE REMARK REVDAT 1 05-SEP-12 3SV8 0 JRNL AUTH K.P.ROMANO,A.ALI,C.AYDIN,D.SOUMANA,A.OZEN,L.M.DEVEAU, JRNL AUTH 2 C.SILVER,H.CAO,A.NEWTON,C.J.PETROPOULOS,W.HUANG,C.A.SCHIFFER JRNL TITL THE MOLECULAR BASIS OF DRUG RESISTANCE AGAINST HEPATITIS C JRNL TITL 2 VIRUS NS3/4A PROTEASE INHIBITORS. JRNL REF PLOS PATHOG. V. 8 02832 2012 JRNL REFN ISSN 1553-7366 JRNL PMID 22910833 JRNL DOI 10.1371/JOURNAL.PPAT.1002832 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 7049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 332 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 480 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.339 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.840 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1471 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 978 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2006 ; 1.352 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2385 ; 1.065 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 192 ; 7.250 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;32.330 ;21.702 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 211 ;17.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.097 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 241 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1635 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 288 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 959 ; 0.433 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 398 ; 0.067 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1541 ; 0.808 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 512 ; 1.251 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 462 ; 1.609 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 989 A 997 REMARK 3 ORIGIN FOR THE GROUP (A): -20.0322 7.2688 -1.4529 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.4615 REMARK 3 T33: 0.5266 T12: -0.0453 REMARK 3 T13: -0.0430 T23: 0.1043 REMARK 3 L TENSOR REMARK 3 L11: 3.0816 L22: 2.7689 REMARK 3 L33: 7.3667 L12: 1.6245 REMARK 3 L13: -1.3708 L23: 2.8705 REMARK 3 S TENSOR REMARK 3 S11: -0.1177 S12: -0.1831 S13: 0.0340 REMARK 3 S21: -0.0754 S22: -0.0864 S23: 0.1537 REMARK 3 S31: 0.0610 S32: 0.0354 S33: 0.2041 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 998 A 1008 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0524 25.4189 -6.7107 REMARK 3 T TENSOR REMARK 3 T11: 0.3810 T22: 0.3055 REMARK 3 T33: 0.2610 T12: -0.0360 REMARK 3 T13: -0.1010 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 3.9985 L22: 5.3799 REMARK 3 L33: 2.7775 L12: 0.1455 REMARK 3 L13: -3.0055 L23: -1.4614 REMARK 3 S TENSOR REMARK 3 S11: -0.1186 S12: 0.1010 S13: -0.0462 REMARK 3 S21: -0.4146 S22: 0.0796 S23: 0.5176 REMARK 3 S31: -0.0115 S32: -0.0208 S33: 0.0390 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1009 A 1021 REMARK 3 ORIGIN FOR THE GROUP (A): -26.4574 5.7974 1.0428 REMARK 3 T TENSOR REMARK 3 T11: 0.5324 T22: 0.3783 REMARK 3 T33: 0.6130 T12: 0.0157 REMARK 3 T13: 0.0475 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 2.1334 L22: 7.2527 REMARK 3 L33: 0.0530 L12: 3.8037 REMARK 3 L13: -0.2507 L23: -0.5521 REMARK 3 S TENSOR REMARK 3 S11: 0.3540 S12: -0.2605 S13: -0.1550 REMARK 3 S21: 0.5965 S22: -0.2856 S23: 0.2168 REMARK 3 S31: -0.0376 S32: -0.0088 S33: -0.0684 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1022 A 1032 REMARK 3 ORIGIN FOR THE GROUP (A): -23.6918 9.3621 -8.5214 REMARK 3 T TENSOR REMARK 3 T11: 0.2465 T22: 0.3078 REMARK 3 T33: 0.5763 T12: -0.0045 REMARK 3 T13: -0.0714 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 7.4022 L22: 1.5903 REMARK 3 L33: 7.1186 L12: 2.2379 REMARK 3 L13: -1.6636 L23: -2.9803 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: 0.3903 S13: -0.0375 REMARK 3 S21: -0.1200 S22: 0.1726 S23: 0.1232 REMARK 3 S31: 0.2835 S32: -0.0566 S33: -0.2235 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1033 A 1040 REMARK 3 ORIGIN FOR THE GROUP (A): -18.1305 10.9763 1.1088 REMARK 3 T TENSOR REMARK 3 T11: 0.2940 T22: 0.3121 REMARK 3 T33: 0.4992 T12: 0.0311 REMARK 3 T13: -0.0148 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 4.7019 L22: 8.2475 REMARK 3 L33: 2.0221 L12: -1.5637 REMARK 3 L13: 2.4468 L23: 1.5679 REMARK 3 S TENSOR REMARK 3 S11: -0.6146 S12: -0.6338 S13: -0.0277 REMARK 3 S21: 0.7057 S22: 0.4328 S23: 0.1298 REMARK 3 S31: -0.2167 S32: -0.3041 S33: 0.1817 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1041 A 1051 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4084 13.7983 -4.5036 REMARK 3 T TENSOR REMARK 3 T11: 0.3616 T22: 0.3169 REMARK 3 T33: 0.3356 T12: 0.0250 REMARK 3 T13: -0.0587 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 3.4877 L22: 3.5586 REMARK 3 L33: 1.2720 L12: -0.0888 REMARK 3 L13: 0.8444 L23: 1.9256 REMARK 3 S TENSOR REMARK 3 S11: -0.1922 S12: -0.1125 S13: -0.1836 REMARK 3 S21: -0.0187 S22: 0.0817 S23: 0.2940 REMARK 3 S31: -0.0360 S32: 0.0154 S33: 0.1105 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1052 A 1060 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1099 9.2906 -0.9697 REMARK 3 T TENSOR REMARK 3 T11: 0.3093 T22: 0.2863 REMARK 3 T33: 0.2867 T12: -0.0275 REMARK 3 T13: -0.0137 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.7111 L22: 5.4747 REMARK 3 L33: 0.4905 L12: -0.0235 REMARK 3 L13: 0.3586 L23: -0.9850 REMARK 3 S TENSOR REMARK 3 S11: 0.1745 S12: -0.0229 S13: -0.6527 REMARK 3 S21: -0.0175 S22: -0.0657 S23: 0.2878 REMARK 3 S31: 0.2940 S32: -0.1005 S33: -0.1088 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1061 A 1066 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9233 2.0167 -3.4272 REMARK 3 T TENSOR REMARK 3 T11: 0.3994 T22: 0.2820 REMARK 3 T33: 0.3873 T12: -0.0179 REMARK 3 T13: -0.0419 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 9.1353 L22: 8.1026 REMARK 3 L33: 0.9893 L12: 2.5182 REMARK 3 L13: -0.0516 L23: 2.6864 REMARK 3 S TENSOR REMARK 3 S11: 0.3445 S12: -0.2962 S13: -0.4477 REMARK 3 S21: 0.3635 S22: -0.4455 S23: 0.1709 REMARK 3 S31: 0.1372 S32: -0.1295 S33: 0.1010 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1067 A 1080 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0028 3.4623 -7.5028 REMARK 3 T TENSOR REMARK 3 T11: 0.4116 T22: 0.2699 REMARK 3 T33: 0.3596 T12: 0.0097 REMARK 3 T13: -0.0822 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 6.1577 L22: 3.3235 REMARK 3 L33: 2.6803 L12: 1.9455 REMARK 3 L13: 2.0577 L23: 0.4487 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: 0.1003 S13: -0.4182 REMARK 3 S21: -0.5288 S22: 0.1107 S23: -0.0120 REMARK 3 S31: 0.1821 S32: -0.1731 S33: -0.1054 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1081 A 1086 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0402 7.8025 -5.7784 REMARK 3 T TENSOR REMARK 3 T11: 0.2137 T22: 0.3371 REMARK 3 T33: 0.2365 T12: 0.0801 REMARK 3 T13: 0.0187 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 15.6954 L22: 5.8910 REMARK 3 L33: 18.7324 L12: 3.2563 REMARK 3 L13: 13.6666 L23: -2.3072 REMARK 3 S TENSOR REMARK 3 S11: 0.4604 S12: 0.6977 S13: -0.4631 REMARK 3 S21: -0.1788 S22: 0.3222 S23: -0.1376 REMARK 3 S31: 0.2773 S32: 0.0666 S33: -0.7826 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1087 A 1093 REMARK 3 ORIGIN FOR THE GROUP (A): -17.1256 12.8887 -14.2148 REMARK 3 T TENSOR REMARK 3 T11: 0.3271 T22: 0.4442 REMARK 3 T33: 0.5678 T12: 0.0174 REMARK 3 T13: -0.1053 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 16.0665 L22: 16.9000 REMARK 3 L33: 6.6236 L12: 10.8176 REMARK 3 L13: -4.0901 L23: 4.5612 REMARK 3 S TENSOR REMARK 3 S11: -0.3715 S12: 0.8860 S13: 0.0837 REMARK 3 S21: -0.6784 S22: 0.1508 S23: 0.5846 REMARK 3 S31: -0.2924 S32: -0.5243 S33: 0.2207 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1094 A 1106 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7907 27.8681 -7.7451 REMARK 3 T TENSOR REMARK 3 T11: 0.3338 T22: 0.3553 REMARK 3 T33: 0.2339 T12: 0.0145 REMARK 3 T13: 0.0044 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 4.1658 L22: 4.3102 REMARK 3 L33: 0.8802 L12: 2.2393 REMARK 3 L13: -0.1322 L23: -0.9081 REMARK 3 S TENSOR REMARK 3 S11: 0.1305 S12: 0.1653 S13: 0.0729 REMARK 3 S21: -0.3450 S22: 0.0384 S23: -0.0120 REMARK 3 S31: -0.1862 S32: 0.1804 S33: -0.1689 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1107 A 1112 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9945 23.4426 2.4857 REMARK 3 T TENSOR REMARK 3 T11: 0.4221 T22: 0.3027 REMARK 3 T33: 0.2635 T12: 0.0342 REMARK 3 T13: 0.0872 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 42.7846 L22: 10.6978 REMARK 3 L33: 2.7588 L12: -2.5271 REMARK 3 L13: 8.3623 L23: 2.9497 REMARK 3 S TENSOR REMARK 3 S11: -0.3843 S12: -0.5512 S13: -1.2430 REMARK 3 S21: 1.4587 S22: 0.4528 S23: 0.4901 REMARK 3 S31: 0.3836 S32: 0.0118 S33: -0.0685 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1113 A 1118 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6665 30.5988 0.6379 REMARK 3 T TENSOR REMARK 3 T11: 0.2587 T22: 0.3205 REMARK 3 T33: 0.3023 T12: -0.0352 REMARK 3 T13: -0.0628 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 9.8843 L22: 2.2666 REMARK 3 L33: 4.7203 L12: 2.1918 REMARK 3 L13: 6.0842 L23: 0.2525 REMARK 3 S TENSOR REMARK 3 S11: -0.1351 S12: 0.2247 S13: 0.4517 REMARK 3 S21: 0.3369 S22: 0.0157 S23: -0.1199 REMARK 3 S31: -0.2399 S32: 0.1570 S33: 0.1194 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1119 A 1129 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4866 28.4504 4.9628 REMARK 3 T TENSOR REMARK 3 T11: 0.3221 T22: 0.3360 REMARK 3 T33: 0.2867 T12: -0.0157 REMARK 3 T13: 0.0306 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.2242 L22: 10.1495 REMARK 3 L33: 2.4041 L12: 1.5414 REMARK 3 L13: 1.0020 L23: -0.0442 REMARK 3 S TENSOR REMARK 3 S11: -0.1206 S12: 0.2192 S13: -0.0948 REMARK 3 S21: 0.3162 S22: -0.0101 S23: 0.0813 REMARK 3 S31: -0.2566 S32: -0.0365 S33: 0.1307 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1130 A 1136 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5274 24.1458 10.9119 REMARK 3 T TENSOR REMARK 3 T11: 0.3265 T22: 0.3860 REMARK 3 T33: 0.3820 T12: 0.0251 REMARK 3 T13: 0.0207 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 10.8450 L22: 3.2976 REMARK 3 L33: 20.0062 L12: 0.0028 REMARK 3 L13: 6.9189 L23: 7.1722 REMARK 3 S TENSOR REMARK 3 S11: -0.2420 S12: -0.1641 S13: -0.3268 REMARK 3 S21: 0.0204 S22: 0.0137 S23: 0.2003 REMARK 3 S31: -0.1248 S32: -0.0951 S33: 0.2284 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1137 A 1148 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5478 23.9326 -3.6138 REMARK 3 T TENSOR REMARK 3 T11: 0.2954 T22: 0.3390 REMARK 3 T33: 0.2885 T12: -0.0041 REMARK 3 T13: -0.0146 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.2650 L22: 12.0746 REMARK 3 L33: 5.6838 L12: 0.4372 REMARK 3 L13: -0.4381 L23: -8.0406 REMARK 3 S TENSOR REMARK 3 S11: 0.1474 S12: -0.0249 S13: 0.0355 REMARK 3 S21: -0.1712 S22: -0.0853 S23: -0.2257 REMARK 3 S31: -0.0393 S32: -0.0819 S33: -0.0621 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1149 A 1159 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1949 21.0358 1.0954 REMARK 3 T TENSOR REMARK 3 T11: 0.2512 T22: 0.2611 REMARK 3 T33: 0.2389 T12: -0.0152 REMARK 3 T13: 0.0134 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 5.1151 L22: 2.1291 REMARK 3 L33: 5.2569 L12: -0.9105 REMARK 3 L13: 5.0935 L23: -0.3065 REMARK 3 S TENSOR REMARK 3 S11: 0.1407 S12: 0.0236 S13: -0.0740 REMARK 3 S21: 0.0253 S22: -0.0605 S23: 0.0291 REMARK 3 S31: 0.1363 S32: 0.0089 S33: -0.0802 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1160 A 1172 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6908 22.8607 6.5441 REMARK 3 T TENSOR REMARK 3 T11: 0.3024 T22: 0.3542 REMARK 3 T33: 0.2722 T12: -0.0761 REMARK 3 T13: 0.0164 T23: -0.0396 REMARK 3 L TENSOR REMARK 3 L11: 3.3656 L22: 2.3904 REMARK 3 L33: 0.6932 L12: -0.9072 REMARK 3 L13: -1.1023 L23: -0.5421 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: -0.4934 S13: 0.1177 REMARK 3 S21: 0.3057 S22: 0.0153 S23: -0.0446 REMARK 3 S31: -0.1660 S32: 0.2248 S33: -0.0722 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1173 A 1179 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7878 14.0184 -10.1857 REMARK 3 T TENSOR REMARK 3 T11: 0.4372 T22: 0.3967 REMARK 3 T33: 0.2990 T12: -0.1001 REMARK 3 T13: 0.0126 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 12.9739 L22: 2.5704 REMARK 3 L33: 0.2763 L12: 0.7355 REMARK 3 L13: -1.3743 L23: 0.4863 REMARK 3 S TENSOR REMARK 3 S11: -0.6830 S12: 0.7258 S13: 0.4240 REMARK 3 S21: -0.8240 S22: 0.7075 S23: 0.0890 REMARK 3 S31: -0.1286 S32: 0.0421 S33: -0.0245 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3SV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000066693. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7049 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-25% PEG 3350, 0.1M MES (PH 6.5), 4% REMARK 280 AMMONIUM SULFATE, HANGING DROP, VAPOR DIFFUSION, TEMPERATURE REMARK 280 295K, PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.52550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.76600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.76600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.76275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.76600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.76600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.28825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.76600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.76600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.76275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.76600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.76600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.28825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.52550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 980 REMARK 465 SER A 981 REMARK 465 HIS A 982 REMARK 465 MET A 983 REMARK 465 ALA A 984 REMARK 465 SER A 985 REMARK 465 MET A 986 REMARK 465 LYS A 987 REMARK 465 LYS A 988 REMARK 465 PRO A 1182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 989 CG CD CE NZ REMARK 470 GLN A1009 CG CD OE1 NE2 REMARK 470 GLU A1013 CG CD OE1 OE2 REMARK 470 GLU A1014 CG CD OE1 OE2 REMARK 470 GLN A1017 CG CD OE1 NE2 REMARK 470 GLU A1018 CG CD OE1 OE2 REMARK 470 GLN A1028 CG CD OE1 NE2 REMARK 470 LYS A1080 CG CD CE NZ REMARK 470 ASP A1121 CG OD1 OD2 REMARK 470 ARG A1180 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A1145 CB CYS A1145 SG -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 997 142.53 -171.29 REMARK 500 THR A1038 -162.69 -102.45 REMARK 500 CYS A1145 158.02 -37.78 REMARK 500 ARG A1180 47.40 -102.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 1144 CYS A 1145 149.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 TELAPREVIR IS A LINEAR, PEPTIDOMIMETIC HCV NS3/4A PROTEASE REMARK 600 INHIBITOR FROM VERTEX. TELAPREVIR WAS FDA APPROVED FOR CLINICAL USE REMARK 600 IN HUMANS. THE DRUG MIMICS THE PEPTIDE BACKBONE OF PROTEINS, REMARK 600 ALTHOUGH THE DRUG MOIETIES CANNOT BE SEQUENCED USING AMINO ACID REMARK 600 NOMENCLATURE REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 53 O REMARK 620 2 CYS A1099 SG 114.1 REMARK 620 3 CYS A1097 SG 130.3 94.5 REMARK 620 N 1 2 REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: (1S,3AR,6AS)-2-[(2S)-2-({(2S)-2-CYCLOHEXYL-2- REMARK 630 [(PYRAZIN-2-YLCARBONYL)AMINO]ACETYL}AMINO)-3,3-DIMETHYLBUTANOYL]-N- REMARK 630 [(2R,3S)-1-(CYCLOPROPYLAMINO)-2-HYDROXY-1-OXOHEXAN-3-YL] REMARK 630 OCTAHYDROCYCLOPENTA[C]PYRROLE-1-CARBOXAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 SV6 A 1 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: VGL CHG TBG 037 03A REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SV6 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SU3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH VANIPREVIR REMARK 900 RELATED ID: 3SU4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT R155K IN COMPLEX WITH REMARK 900 VANIPREVIR REMARK 900 RELATED ID: 3SU5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT D168A IN COMPLEX WITH REMARK 900 VANIPREVIR REMARK 900 RELATED ID: 3SU6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT A156T IN COMPLEX WITH REMARK 900 VANIPREVIR REMARK 900 RELATED ID: 3SUD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH MK-5172 REMARK 900 RELATED ID: 3SUE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT R155K IN COMPLEX WITH REMARK 900 MK-5172 REMARK 900 RELATED ID: 3SUF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT D168A IN COMPLEX WITH REMARK 900 MK-5172 REMARK 900 RELATED ID: 3SUG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT A156T IN COMPLEX WITH REMARK 900 MK-5172 REMARK 900 RELATED ID: 3SV6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH TELAPREVIR REMARK 900 RELATED ID: 3SV7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT R155K IN COMPLEX WITH REMARK 900 TELAPREVIR REMARK 900 RELATED ID: 3SV9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT A156T IN COMPLEX WITH REMARK 900 TELAPREVIR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE COFACTOR 4A RESIDUES 986-1000 (MET LYS LYS LYS GLY SER VAL VAL REMARK 999 ILE VAL GLY ARG ILE ASN LEU) IN THIS ENTRY CORRESPOND TO RESIDUES REMARK 999 NUMBERING 1674-1688 OF DATABASE SEQUENCE REFERENCE (UNP A8DG50). REMARK 999 THIS PEPTIDE IS COVALENTLY LINKED TO THE N-TERMINUS OF NS3. C1679S REMARK 999 MUTATION WAS ENGINEERED TO PREVENT DISULFIDE FORMATION. THE V1686I REMARK 999 AND I1687N WERE ENGINEERED TO OPTIMIZE THE LINKER BETWEEN THE REMARK 999 COFACTOR 4A AND NS3. DBREF 3SV8 A 986 1000 UNP A8DG50 A8DG50_9HEPC 1674 1688 DBREF 3SV8 A 1001 1182 UNP A8DG50 A8DG50_9HEPC 1027 1208 SEQADV 3SV8 GLY A 980 UNP A8DG50 EXPRESSION TAG SEQADV 3SV8 SER A 981 UNP A8DG50 EXPRESSION TAG SEQADV 3SV8 HIS A 982 UNP A8DG50 EXPRESSION TAG SEQADV 3SV8 MET A 983 UNP A8DG50 EXPRESSION TAG SEQADV 3SV8 ALA A 984 UNP A8DG50 EXPRESSION TAG SEQADV 3SV8 SER A 985 UNP A8DG50 EXPRESSION TAG SEQADV 3SV8 MET A 986 UNP A8DG50 CYS 1674 ENGINEERED MUTATION SEQADV 3SV8 LYS A 987 UNP A8DG50 LEU 1675 ENGINEERED MUTATION SEQADV 3SV8 LYS A 988 UNP A8DG50 SER 1676 ENGINEERED MUTATION SEQADV 3SV8 LYS A 989 UNP A8DG50 THR 1677 ENGINEERED MUTATION SEQADV 3SV8 SER A 991 UNP A8DG50 CYS 1679 SEE REMARK 999 SEQADV 3SV8 ILE A 998 UNP A8DG50 VAL 1686 SEE REMARK 999 SEQADV 3SV8 ASN A 999 UNP A8DG50 ILE 1687 SEE REMARK 999 SEQADV 3SV8 SER A 1001 UNP A8DG50 ALA 1027 ENGINEERED MUTATION SEQADV 3SV8 GLY A 1002 UNP A8DG50 PRO 1028 ENGINEERED MUTATION SEQADV 3SV8 ASP A 1003 UNP A8DG50 ILE 1029 ENGINEERED MUTATION SEQADV 3SV8 GLU A 1013 UNP A8DG50 LEU 1039 ENGINEERED MUTATION SEQADV 3SV8 GLU A 1014 UNP A8DG50 LEU 1040 ENGINEERED MUTATION SEQADV 3SV8 GLN A 1017 UNP A8DG50 ILE 1043 ENGINEERED MUTATION SEQADV 3SV8 GLU A 1018 UNP A8DG50 ILE 1044 ENGINEERED MUTATION SEQADV 3SV8 GLN A 1021 UNP A8DG50 LEU 1047 ENGINEERED MUTATION SEQADV 3SV8 THR A 1040 UNP A8DG50 ALA 1066 ENGINEERED MUTATION SEQADV 3SV8 SER A 1047 UNP A8DG50 CYS 1073 ENGINEERED MUTATION SEQADV 3SV8 LEU A 1052 UNP A8DG50 CYS 1078 ENGINEERED MUTATION SEQADV 3SV8 THR A 1072 UNP A8DG50 ILE 1098 ENGINEERED MUTATION SEQADV 3SV8 GLN A 1086 UNP A8DG50 PRO 1112 ENGINEERED MUTATION SEQADV 3SV8 SER A 1159 UNP A8DG50 CYS 1185 ENGINEERED MUTATION SEQADV 3SV8 ALA A 1168 UNP A8DG50 ASP 1194 ENGINEERED MUTATION SEQRES 1 A 203 GLY SER HIS MET ALA SER MET LYS LYS LYS GLY SER VAL SEQRES 2 A 203 VAL ILE VAL GLY ARG ILE ASN LEU SER GLY ASP THR ALA SEQRES 3 A 203 TYR ALA GLN GLN THR ARG GLY GLU GLU GLY CYS GLN GLU SEQRES 4 A 203 THR SER GLN THR GLY ARG ASP LYS ASN GLN VAL GLU GLY SEQRES 5 A 203 GLU VAL GLN ILE VAL SER THR ALA THR GLN THR PHE LEU SEQRES 6 A 203 ALA THR SER ILE ASN GLY VAL LEU TRP THR VAL TYR HIS SEQRES 7 A 203 GLY ALA GLY THR ARG THR ILE ALA SER PRO LYS GLY PRO SEQRES 8 A 203 VAL THR GLN MET TYR THR ASN VAL ASP LYS ASP LEU VAL SEQRES 9 A 203 GLY TRP GLN ALA PRO GLN GLY SER ARG SER LEU THR PRO SEQRES 10 A 203 CYS THR CYS GLY SER SER ASP LEU TYR LEU VAL THR ARG SEQRES 11 A 203 HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG GLY ASP SER SEQRES 12 A 203 ARG GLY SER LEU LEU SER PRO ARG PRO ILE SER TYR LEU SEQRES 13 A 203 LYS GLY SER SER GLY GLY PRO LEU LEU CYS PRO ALA GLY SEQRES 14 A 203 HIS ALA VAL GLY ILE PHE ARG ALA ALA VAL SER THR ARG SEQRES 15 A 203 GLY VAL ALA LYS ALA VAL ALA PHE ILE PRO VAL GLU SER SEQRES 16 A 203 LEU GLU THR THR MET ARG SER PRO HET SV6 A 1 49 HET GOL A 2 6 HET ZN A 3 1 HETNAM SV6 (1S,3AR,6AS)-2-[(2S)-2-({(2S)-2-CYCLOHEXYL-2-[(PYRAZIN- HETNAM 2 SV6 2-YLCARBONYL)AMINO]ACETYL}AMINO)-3,3- HETNAM 3 SV6 DIMETHYLBUTANOYL]-N-[(2R,3S)-1-(CYCLOPROPYLAMINO)-2- HETNAM 4 SV6 HYDROXY-1-OXOHEXAN-3-YL]OCTAHYDROCYCLOPENTA[C]PYRROLE- HETNAM 5 SV6 1-CARBOXAMIDE HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN SV6 TELAPREVIR, BOUND FORM HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SV6 C36 H55 N7 O6 FORMUL 3 GOL C3 H8 O3 FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *44(H2 O) HELIX 1 1 GLY A 1012 GLY A 1023 1 12 HELIX 2 2 TYR A 1056 GLY A 1060 1 5 HELIX 3 3 ILE A 1132 LYS A 1136 1 5 HELIX 4 4 VAL A 1172 ARG A 1180 1 9 SHEET 1 A 7 TYR A1006 GLN A1009 0 SHEET 2 A 7 VAL A 993 ASN A 999 -1 N ARG A 997 O GLN A1008 SHEET 3 A 7 VAL A1033 SER A1037 -1 O VAL A1033 N ILE A 998 SHEET 4 A 7 THR A1042 ILE A1048 -1 O ALA A1045 N GLN A1034 SHEET 5 A 7 VAL A1051 VAL A1055 -1 O TRP A1053 N THR A1046 SHEET 6 A 7 LEU A1082 GLN A1086 -1 O TRP A1085 N LEU A1052 SHEET 7 A 7 TYR A1075 ASN A1077 -1 N ASN A1077 O LEU A1082 SHEET 1 B 7 ASP A1103 VAL A1107 0 SHEET 2 B 7 VAL A1113 ARG A1118 -1 O ILE A1114 N LEU A1106 SHEET 3 B 7 ARG A1123 PRO A1131 -1 O SER A1125 N ARG A1117 SHEET 4 B 7 VAL A1163 PRO A1171 -1 O VAL A1167 N GLY A1124 SHEET 5 B 7 ALA A1150 THR A1160 -1 N VAL A1158 O LYS A1165 SHEET 6 B 7 PRO A1142 LEU A1144 -1 N LEU A1143 O VAL A1151 SHEET 7 B 7 ASP A1103 VAL A1107 -1 N VAL A1107 O PRO A1142 LINK OG SER A1139 CAI SV6 A 1 1555 1555 1.36 LINK ZN ZN A 3 O HOH A 53 1555 1555 2.25 LINK SG CYS A1099 ZN ZN A 3 1555 1555 2.39 LINK SG CYS A1097 ZN ZN A 3 1555 1555 2.48 SITE 1 AC1 13 ASP A1003 THR A1042 HIS A1057 VAL A1113 SITE 2 AC1 13 LYS A1136 GLY A1137 SER A1138 SER A1139 SITE 3 AC1 13 ARG A1155 ALA A1156 ALA A1157 VAL A1158 SITE 4 AC1 13 SER A1159 SITE 1 AC2 5 HOH A 46 TYR A1105 ARG A1123 CYS A1145 SITE 2 AC2 5 GLY A1148 SITE 1 AC3 4 HOH A 53 CYS A1097 CYS A1099 CYS A1145 CRYST1 69.532 69.532 79.051 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012650 0.00000