HEADER TRANSCRIPTION REGULATOR 15-JUL-11 3SXY TITLE METAL-FREE FULL-LENGTH STRUCTURE OF TM0439, A METAL-BINDING FCD FAMILY TITLE 2 TRANSCRIPTIONAL REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, GNTR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 STRAIN: MSB8 / DSM 3109 / JCM 10099; SOURCE 5 GENE: TM_0439; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION, METAL-BINDING, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, INTEGRATED CENTER FOR KEYWDS 3 STRUCTURE AND FUNCTION INNOVATION, ISFI, FADR-C, FADR, GNTR, KEYWDS 4 TRANSCRIPTIONAL REGULATOR, TRANSCRIPTION REPRESSOR, ZINC-BINDING, KEYWDS 5 NICKEL-BINDING, DNA-BINDING, SURFACE ENTROPY REDUCTION, KEYWDS 6 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR G.P.CZELAKOWSKI,Z.S.DEREWENDA,INTEGRATED CENTER FOR STRUCTURE AND AUTHOR 2 FUNCTION INNOVATION (ISFI) REVDAT 3 13-SEP-23 3SXY 1 REMARK SEQADV REVDAT 2 08-NOV-17 3SXY 1 REMARK REVDAT 1 16-NOV-11 3SXY 0 JRNL AUTH G.P.CZELAKOWSKI,Z.S.DEREWENDA JRNL TITL METAL-FREE FULL-LENGTH STRUCTURE OF TM0439, A METAL-BINDING JRNL TITL 2 FCD FAMILY TRANSCRIPTIONAL REGULATOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.ZHENG,D.R.COOPER,N.E.GROSSOEHME,M.YU,L.W.HUNG,M.CIESLIK, REMARK 1 AUTH 2 U.DEREWENDA,S.A.LESLEY,I.A.WILSON,D.P.GIEDROC,Z.S.DEREWENDA REMARK 1 TITL STRUCTURE OF THERMOTOGA MARITIMA TM0439: IMPLICATIONS FOR REMARK 1 TITL 2 THE MECHANISM OF BACTERIAL GNTR TRANSCRIPTION REGULATORS REMARK 1 TITL 3 WITH ZN2+-BINDING FCD DOMAINS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 65 356 2009 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 19307717 REMARK 1 DOI 10.1107/S0907444909004727 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_817 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 56587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6576 - 3.2928 0.99 7238 153 0.1748 0.1665 REMARK 3 2 3.2928 - 2.6139 1.00 7198 170 0.1642 0.1671 REMARK 3 3 2.6139 - 2.2836 1.00 7227 135 0.1609 0.1726 REMARK 3 4 2.2836 - 2.0748 1.00 7188 142 0.1677 0.1638 REMARK 3 5 2.0748 - 1.9261 1.00 7134 165 0.1829 0.2181 REMARK 3 6 1.9261 - 1.8126 1.00 7191 143 0.2239 0.2423 REMARK 3 7 1.8126 - 1.7218 1.00 7120 157 0.2273 0.2379 REMARK 3 8 1.7218 - 1.6468 0.71 5121 105 0.2440 0.2467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 50.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04590 REMARK 3 B22 (A**2) : 0.79640 REMARK 3 B33 (A**2) : -0.75050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.94770 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.023 3441 REMARK 3 ANGLE : 1.704 4631 REMARK 3 CHIRALITY : 0.113 530 REMARK 3 PLANARITY : 0.014 593 REMARK 3 DIHEDRAL : 13.075 1367 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 13:32) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5357 229.5264 -4.2349 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.2435 REMARK 3 T33: 0.1902 T12: -0.0582 REMARK 3 T13: 0.0420 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 7.1452 L22: 9.0339 REMARK 3 L33: 7.9386 L12: -0.9225 REMARK 3 L13: 3.5130 L23: -2.1356 REMARK 3 S TENSOR REMARK 3 S11: -0.0807 S12: -0.7901 S13: -0.1342 REMARK 3 S21: 0.4092 S22: 0.0121 S23: 0.3501 REMARK 3 S31: -0.2692 S32: -0.3097 S33: 0.1366 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 33:77) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8621 225.2699 -11.8090 REMARK 3 T TENSOR REMARK 3 T11: 0.1997 T22: 0.1483 REMARK 3 T33: 0.1778 T12: -0.0263 REMARK 3 T13: 0.0333 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 4.5917 L22: 2.4164 REMARK 3 L33: 2.6028 L12: -0.4824 REMARK 3 L13: 1.7752 L23: -0.8926 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: 0.1467 S13: -0.5375 REMARK 3 S21: 0.1190 S22: 0.1147 S23: 0.2551 REMARK 3 S31: 0.1328 S32: -0.2336 S33: -0.0275 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 78:107) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0327 244.6268 -9.4307 REMARK 3 T TENSOR REMARK 3 T11: 0.0805 T22: 0.1452 REMARK 3 T33: 0.1150 T12: 0.0126 REMARK 3 T13: -0.0002 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.3479 L22: 4.9432 REMARK 3 L33: 2.4488 L12: 1.3335 REMARK 3 L13: 0.3953 L23: -0.1085 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.0230 S13: 0.0411 REMARK 3 S21: -0.1899 S22: 0.0276 S23: 0.1333 REMARK 3 S31: -0.1355 S32: 0.0218 S33: -0.0134 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 108:164) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7138 244.1875 -1.7072 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.1501 REMARK 3 T33: 0.1094 T12: 0.0287 REMARK 3 T13: 0.0166 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.6540 L22: 1.8388 REMARK 3 L33: 2.2240 L12: 0.3107 REMARK 3 L13: -0.0344 L23: 0.2109 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: -0.3535 S13: 0.0029 REMARK 3 S21: 0.2403 S22: 0.0545 S23: 0.1026 REMARK 3 S31: -0.0194 S32: -0.1468 S33: -0.0636 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 165:177) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0726 242.5616 6.9574 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.1598 REMARK 3 T33: 0.0925 T12: -0.0048 REMARK 3 T13: -0.0013 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 8.4556 L22: 3.1371 REMARK 3 L33: 8.2177 L12: 1.1869 REMARK 3 L13: -3.1334 L23: -4.9099 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.4127 S13: -0.2857 REMARK 3 S21: 0.2543 S22: -0.0493 S23: -0.1140 REMARK 3 S31: 0.1876 S32: 0.1404 S33: 0.0833 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 178:215) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8574 240.5181 -0.4760 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.1487 REMARK 3 T33: 0.0982 T12: 0.0251 REMARK 3 T13: -0.0396 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 3.5916 L22: 7.8052 REMARK 3 L33: 0.7641 L12: 3.6080 REMARK 3 L13: -0.2864 L23: -0.9069 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: -0.1833 S13: -0.1666 REMARK 3 S21: 0.2910 S22: -0.0550 S23: -0.3425 REMARK 3 S31: -0.0122 S32: 0.1442 S33: 0.0746 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 14:23) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0655 231.6128 -34.4345 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.2750 REMARK 3 T33: 0.2284 T12: 0.0373 REMARK 3 T13: -0.0034 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 3.4965 L22: 6.0344 REMARK 3 L33: 4.9795 L12: 4.5563 REMARK 3 L13: -4.1355 L23: -5.4554 REMARK 3 S TENSOR REMARK 3 S11: -0.1945 S12: 0.7048 S13: -0.4118 REMARK 3 S21: -0.5706 S22: 0.0376 S23: -0.5968 REMARK 3 S31: 0.5794 S32: 0.3924 S33: 0.2164 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 24:76) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9626 237.1615 -31.4705 REMARK 3 T TENSOR REMARK 3 T11: 0.0761 T22: 0.1449 REMARK 3 T33: 0.1321 T12: 0.0239 REMARK 3 T13: -0.0098 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 3.1134 L22: 2.7316 REMARK 3 L33: 1.3040 L12: 1.6789 REMARK 3 L13: -0.9185 L23: -0.7251 REMARK 3 S TENSOR REMARK 3 S11: -0.0951 S12: 0.1978 S13: 0.2035 REMARK 3 S21: -0.1516 S22: 0.0313 S23: 0.1919 REMARK 3 S31: 0.0834 S32: -0.0443 S33: 0.0790 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 77:179) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3110 236.1064 -30.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.1574 REMARK 3 T33: 0.1399 T12: 0.0162 REMARK 3 T13: 0.0204 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 1.7868 L22: 2.2076 REMARK 3 L33: 1.9288 L12: -0.4455 REMARK 3 L13: 0.2611 L23: -0.8286 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: 0.2258 S13: -0.1721 REMARK 3 S21: -0.2978 S22: -0.0350 S23: -0.1093 REMARK 3 S31: 0.2115 S32: 0.1377 S33: -0.0284 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 180:201) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6524 242.5426 -27.6816 REMARK 3 T TENSOR REMARK 3 T11: 0.0961 T22: 0.2072 REMARK 3 T33: 0.2125 T12: -0.0057 REMARK 3 T13: 0.0400 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 6.9571 L22: 7.9466 REMARK 3 L33: 2.8345 L12: -6.5581 REMARK 3 L13: 3.5099 L23: -3.4986 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.1474 S13: 0.4772 REMARK 3 S21: 0.0425 S22: -0.0612 S23: -0.7460 REMARK 3 S31: -0.1028 S32: 0.2649 S33: 0.0481 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 202:207) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0336 251.6729 -37.3783 REMARK 3 T TENSOR REMARK 3 T11: 0.2319 T22: 0.2239 REMARK 3 T33: 0.2459 T12: 0.0076 REMARK 3 T13: 0.0731 T23: 0.0577 REMARK 3 L TENSOR REMARK 3 L11: 4.1805 L22: 7.5615 REMARK 3 L33: 7.4035 L12: 0.8293 REMARK 3 L13: 5.2825 L23: 3.1937 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: 0.6810 S13: 0.1280 REMARK 3 S21: -1.0263 S22: -0.1840 S23: -0.8086 REMARK 3 S31: 0.0475 S32: 0.8529 S33: -0.0141 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 208:215) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2945 254.4770 -38.9025 REMARK 3 T TENSOR REMARK 3 T11: 0.3907 T22: 0.2533 REMARK 3 T33: 0.3216 T12: 0.0333 REMARK 3 T13: -0.0500 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 3.8014 L22: 3.7777 REMARK 3 L33: 3.9568 L12: -3.2566 REMARK 3 L13: 0.7895 L23: 0.8060 REMARK 3 S TENSOR REMARK 3 S11: 0.2034 S12: 0.8292 S13: 0.8042 REMARK 3 S21: -1.0109 S22: -0.4740 S23: 0.3597 REMARK 3 S31: -1.6502 S32: -1.2620 S33: 0.1990 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 10:210 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 SELECTION : CHAIN 'B' AND (RESSEQ 10:210 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 1598 REMARK 3 RMSD : 0.880 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111. ROSENBAUM-ROCK DOUBLE REMARK 200 -CRYSTAL MONOCHROMATOR: LIQUID REMARK 200 NITROGEN COOLED; SAGITALLY REMARK 200 FOCUSING 2ND CRYSTAL REMARK 200 OPTICS : ROSENBAUM-ROCK VERTICAL FOCUSING REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56675 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB: 3FMS, CHAIN A 6-211 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS PH 8.0, 300 MM NACL, 17% REMARK 280 PEG 3350, 200 MM NH4NO3, 10MM EDTA, 2MM DTT, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.91100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ILE A 4 REMARK 465 GLU A 5 REMARK 465 VAL A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 VAL A 9 REMARK 465 TYR A 211 REMARK 465 GLU A 212 REMARK 465 ARG A 213 REMARK 465 SER A 214 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 ILE B 4 REMARK 465 GLU B 5 REMARK 465 VAL B 6 REMARK 465 ASP B 7 REMARK 465 LEU B 8 REMARK 465 VAL B 9 REMARK 465 TYR B 211 REMARK 465 GLU B 212 REMARK 465 ARG B 213 REMARK 465 SER B 214 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 43 CD1 REMARK 480 LYS B 40 CG CD CE NZ REMARK 480 LYS B 206 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 180 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 180 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 67 -71.08 -134.96 REMARK 500 VAL B 67 -60.25 -132.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 35 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 63 13.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FMS RELATED DB: PDB REMARK 900 FULL-LENGTH NI2+-BOUND STRUCTURE OF TM0439, A FCD FAMILY REMARK 900 TRANSCRIPTIONAL REGULATOR REMARK 900 RELATED ID: 3SXK RELATED DB: PDB REMARK 900 ZN2+-BOUND FCD DOMAIN OF TM0439 A PUTATIVE TRANSCRIPTIONAL REMARK 900 REGULATOR (SER MUTATION E118A, K119A, K122A) REMARK 900 RELATED ID: 3SXM RELATED DB: PDB REMARK 900 METAL-FREE FCD DOMAIN OF TM0439 A PUTATIVE TRANSCRIPTIONAL REMARK 900 REGULATOR (SER MUTATION E118A, K119A, K122A) REMARK 900 RELATED ID: 3SXZ RELATED DB: PDB REMARK 900 RELATED ID: ISFI335 RELATED DB: TARGETDB DBREF 3SXY A 1 214 UNP Q9WYS0 Q9WYS0_THEMA 1 214 DBREF 3SXY B 1 214 UNP Q9WYS0 Q9WYS0_THEMA 1 214 SEQADV 3SXY GLY A -3 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXY ALA A -2 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXY MET A -1 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXY GLY A 0 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXY GLY B -3 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXY ALA B -2 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXY MET B -1 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXY GLY B 0 UNP Q9WYS0 EXPRESSION TAG SEQRES 1 A 218 GLY ALA MET GLY MET LYS LYS ILE GLU VAL ASP LEU VAL SEQRES 2 A 218 ARG THR LYS VAL TYR ASN LEU LEU LYS GLU MET ILE LEU SEQRES 3 A 218 ASN HIS GLU LEU LYS LEU GLY GLU LYS LEU ASN VAL ARG SEQRES 4 A 218 GLU LEU SER GLU LYS LEU GLY ILE SER PHE THR PRO VAL SEQRES 5 A 218 ARG ASP ALA LEU LEU GLN LEU ALA THR GLU GLY LEU VAL SEQRES 6 A 218 LYS VAL VAL PRO ARG VAL GLY PHE PHE VAL THR ASP VAL SEQRES 7 A 218 ASP GLU LYS PHE ILE ARG GLU THR ILE GLU THR ARG ILE SEQRES 8 A 218 MET MET GLU VAL PHE CYS LEU GLU ASN TYR PHE ASP LYS SEQRES 9 A 218 ILE ALA GLY SER GLU GLU LEU LEU GLU ILE LYS GLY GLU SEQRES 10 A 218 ILE ASP ASP VAL GLU LYS SER ALA LYS ARG GLU ILE PHE SEQRES 11 A 218 ASP ASP SER ASP GLU ARG LEU HIS LYS LEU PHE ILE ARG SEQRES 12 A 218 ALA SER GLY ASN GLU LEU ILE ILE SER LEU TYR GLU LYS SEQRES 13 A 218 ILE TRP ASP ARG ILE ASP LEU VAL ARG HIS LEU ASN GLU SEQRES 14 A 218 ARG TYR VAL VAL SER ASN ARG GLU HIS LYS GLU LEU ILE SEQRES 15 A 218 GLU ARG ILE ILE SER GLY ASP LYS GLU GLY ALA ILE GLU SEQRES 16 A 218 LYS LEU LYS GLU HIS LEU LYS ASN VAL GLU ALA GLU THR SEQRES 17 A 218 ILE LYS ASN LEU TYR THR TYR GLU ARG SER SEQRES 1 B 218 GLY ALA MET GLY MET LYS LYS ILE GLU VAL ASP LEU VAL SEQRES 2 B 218 ARG THR LYS VAL TYR ASN LEU LEU LYS GLU MET ILE LEU SEQRES 3 B 218 ASN HIS GLU LEU LYS LEU GLY GLU LYS LEU ASN VAL ARG SEQRES 4 B 218 GLU LEU SER GLU LYS LEU GLY ILE SER PHE THR PRO VAL SEQRES 5 B 218 ARG ASP ALA LEU LEU GLN LEU ALA THR GLU GLY LEU VAL SEQRES 6 B 218 LYS VAL VAL PRO ARG VAL GLY PHE PHE VAL THR ASP VAL SEQRES 7 B 218 ASP GLU LYS PHE ILE ARG GLU THR ILE GLU THR ARG ILE SEQRES 8 B 218 MET MET GLU VAL PHE CYS LEU GLU ASN TYR PHE ASP LYS SEQRES 9 B 218 ILE ALA GLY SER GLU GLU LEU LEU GLU ILE LYS GLY GLU SEQRES 10 B 218 ILE ASP ASP VAL GLU LYS SER ALA LYS ARG GLU ILE PHE SEQRES 11 B 218 ASP ASP SER ASP GLU ARG LEU HIS LYS LEU PHE ILE ARG SEQRES 12 B 218 ALA SER GLY ASN GLU LEU ILE ILE SER LEU TYR GLU LYS SEQRES 13 B 218 ILE TRP ASP ARG ILE ASP LEU VAL ARG HIS LEU ASN GLU SEQRES 14 B 218 ARG TYR VAL VAL SER ASN ARG GLU HIS LYS GLU LEU ILE SEQRES 15 B 218 GLU ARG ILE ILE SER GLY ASP LYS GLU GLY ALA ILE GLU SEQRES 16 B 218 LYS LEU LYS GLU HIS LEU LYS ASN VAL GLU ALA GLU THR SEQRES 17 B 218 ILE LYS ASN LEU TYR THR TYR GLU ARG SER FORMUL 3 HOH *392(H2 O) HELIX 1 1 ARG A 10 ASN A 23 1 14 HELIX 2 2 ASN A 33 GLY A 42 1 10 HELIX 3 3 SER A 44 GLU A 58 1 15 HELIX 4 4 ASP A 75 TYR A 97 1 23 HELIX 5 5 TYR A 97 GLY A 103 1 7 HELIX 6 6 SER A 104 ALA A 121 1 18 HELIX 7 7 LYS A 122 ALA A 140 1 19 HELIX 8 8 ASN A 143 VAL A 160 1 18 HELIX 9 9 ARG A 161 ASN A 164 5 4 HELIX 10 10 ARG A 166 GLY A 184 1 19 HELIX 11 11 ASP A 185 TYR A 209 1 25 HELIX 12 12 ARG B 10 ASN B 23 1 14 HELIX 13 13 ASN B 33 GLY B 42 1 10 HELIX 14 14 SER B 44 GLU B 58 1 15 HELIX 15 15 ASP B 75 TYR B 97 1 23 HELIX 16 16 TYR B 97 GLY B 103 1 7 HELIX 17 17 SER B 104 ALA B 121 1 18 HELIX 18 18 LYS B 122 ALA B 140 1 19 HELIX 19 19 ASN B 143 VAL B 160 1 18 HELIX 20 20 ARG B 161 ASN B 164 5 4 HELIX 21 21 ARG B 166 GLY B 184 1 19 HELIX 22 22 ASP B 185 ASN B 207 1 23 SHEET 1 A 3 LYS A 31 LEU A 32 0 SHEET 2 A 3 GLY A 68 VAL A 71 -1 O PHE A 69 N LEU A 32 SHEET 3 A 3 VAL A 61 VAL A 64 -1 N LYS A 62 O PHE A 70 SHEET 1 B 3 LYS B 31 LEU B 32 0 SHEET 2 B 3 GLY B 68 VAL B 71 -1 O PHE B 69 N LEU B 32 SHEET 3 B 3 VAL B 61 VAL B 64 -1 N VAL B 64 O GLY B 68 CRYST1 55.512 69.822 63.980 90.00 95.44 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018014 0.000000 0.001714 0.00000 SCALE2 0.000000 0.014322 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015700 0.00000 MTRIX1 1 0.699328 0.653390 0.289865 -153.94701 1 MTRIX2 1 0.656376 -0.747570 0.101538 425.65201 1 MTRIX3 1 0.283038 0.119252 -0.951666 -59.42580 1