HEADER TRANSCRIPTION REGULATOR 15-JUL-11 3SXZ TITLE METAL-FREE FCD DOMAIN OF TM0439 A PUTATIVE TRANSCRIPTIONAL REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, GNTR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 STRAIN: MSB8 / DSM 3109 / JCM 10099; SOURCE 5 GENE: TM_0439; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION, METAL-BINDING, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, INTEGRATED CENTER FOR KEYWDS 3 STRUCTURE AND FUNCTION INNOVATION, ISFI, FADR-C, FADR, GNTR, KEYWDS 4 TRANSCRIPTIONAL REGULATOR, TRANSCRIPTION REPRESSOR, ZINC-BINDING, KEYWDS 5 NICKEL-BINDING, DNA-BINDING, SURFACE ENTROPY REDUCTION, KEYWDS 6 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR G.P.CZELAKOWSKI,Z.S.DEREWENDA,INTEGRATED CENTER FOR STRUCTURE AND AUTHOR 2 FUNCTION INNOVATION (ISFI) REVDAT 3 13-SEP-23 3SXZ 1 SEQADV REVDAT 2 08-NOV-17 3SXZ 1 REMARK REVDAT 1 16-NOV-11 3SXZ 0 JRNL AUTH G.P.CZELAKOWSKI,Z.S.DEREWENDA JRNL TITL METAL-FREE FCD DOMAIN OF TM0439 A PUTATIVE TRANSCRIPTIONAL JRNL TITL 2 REGULATOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.ZHENG,D.R.COOPER,N.E.GROSSOEHME,M.YU,L.W.HUNG,M.CIESLIK, REMARK 1 AUTH 2 U.DEREWENDA,S.A.LESLEY,I.A.WILSON,D.P.GIEDROC,Z.S.DEREWENDA REMARK 1 TITL STRUCTURE OF THERMOTOGA MARITIMA TM0439: IMPLICATIONS FOR REMARK 1 TITL 2 THE MECHANISM OF BACTERIAL GNTR TRANSCRIPTION REGULATORS REMARK 1 TITL 3 WITH ZN2+-BINDING FCD DOMAINS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 65 356 2009 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 19307717 REMARK 1 DOI 10.1107/S0907444909004727 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_817 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.650 REMARK 3 FREE R VALUE TEST SET COUNT : 1025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.8402 - 4.4359 1.00 2157 164 0.1783 0.1909 REMARK 3 2 4.4359 - 3.5232 1.00 2075 129 0.1598 0.1907 REMARK 3 3 3.5232 - 3.0785 1.00 2072 142 0.2067 0.2496 REMARK 3 4 3.0785 - 2.7973 1.00 2030 141 0.2224 0.2629 REMARK 3 5 2.7973 - 2.5969 1.00 2036 145 0.2376 0.2615 REMARK 3 6 2.5969 - 2.4439 1.00 1995 168 0.2409 0.2999 REMARK 3 7 2.4439 - 2.3216 0.99 2020 136 0.2490 0.2839 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 52.22 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.15800 REMARK 3 B22 (A**2) : 5.15800 REMARK 3 B33 (A**2) : -10.31590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2366 REMARK 3 ANGLE : 1.081 3167 REMARK 3 CHIRALITY : 0.069 348 REMARK 3 PLANARITY : 0.005 409 REMARK 3 DIHEDRAL : 16.989 929 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 72:96) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3782 58.6335 9.9715 REMARK 3 T TENSOR REMARK 3 T11: 0.2864 T22: 0.1921 REMARK 3 T33: 0.2372 T12: 0.0345 REMARK 3 T13: 0.0365 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.6826 L22: 0.5483 REMARK 3 L33: 0.2166 L12: 0.7199 REMARK 3 L13: 0.4974 L23: 0.3747 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0809 S13: 0.0364 REMARK 3 S21: -0.1721 S22: 0.0896 S23: 0.0435 REMARK 3 S31: -0.0056 S32: 0.0835 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 97:104) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7461 40.4087 11.2065 REMARK 3 T TENSOR REMARK 3 T11: 0.4206 T22: 0.1707 REMARK 3 T33: 0.2885 T12: 0.0988 REMARK 3 T13: 0.0219 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.5894 L22: 0.0888 REMARK 3 L33: 0.0588 L12: 0.1164 REMARK 3 L13: -0.0301 L23: 0.0274 REMARK 3 S TENSOR REMARK 3 S11: 0.3172 S12: 0.0902 S13: 0.0869 REMARK 3 S21: -0.1816 S22: -0.0554 S23: 0.0114 REMARK 3 S31: 0.2945 S32: 0.2156 S33: 0.1012 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 105:116) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1492 47.8249 3.9791 REMARK 3 T TENSOR REMARK 3 T11: 0.4907 T22: 0.5644 REMARK 3 T33: 0.3602 T12: 0.1967 REMARK 3 T13: 0.0914 T23: -0.0715 REMARK 3 L TENSOR REMARK 3 L11: 1.2371 L22: 4.5329 REMARK 3 L33: 0.2530 L12: 2.3258 REMARK 3 L13: 0.4137 L23: 0.7442 REMARK 3 S TENSOR REMARK 3 S11: -0.1927 S12: 0.5424 S13: 0.0835 REMARK 3 S21: -1.5516 S22: 0.5856 S23: -0.6313 REMARK 3 S31: -0.2098 S32: 0.5385 S33: -0.0070 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 117:143) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0353 53.5718 2.3095 REMARK 3 T TENSOR REMARK 3 T11: 0.3630 T22: 0.2727 REMARK 3 T33: 0.2906 T12: 0.1010 REMARK 3 T13: 0.1243 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 0.3776 L22: 0.1381 REMARK 3 L33: 0.4759 L12: 0.3272 REMARK 3 L13: -0.0985 L23: -0.0493 REMARK 3 S TENSOR REMARK 3 S11: 0.0936 S12: 0.4586 S13: -0.2904 REMARK 3 S21: -0.4995 S22: -0.1900 S23: -0.2422 REMARK 3 S31: 0.0005 S32: 0.0591 S33: -0.0181 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 144:163) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3372 56.3643 0.7872 REMARK 3 T TENSOR REMARK 3 T11: 0.4497 T22: 0.2437 REMARK 3 T33: 0.2267 T12: 0.0777 REMARK 3 T13: 0.0614 T23: 0.1008 REMARK 3 L TENSOR REMARK 3 L11: 1.5777 L22: 0.6316 REMARK 3 L33: 0.7453 L12: 0.7812 REMARK 3 L13: -0.2581 L23: -0.6573 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: 1.1348 S13: -0.1021 REMARK 3 S21: -0.8121 S22: 0.0958 S23: -0.0903 REMARK 3 S31: -0.0345 S32: -0.3612 S33: -0.0354 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 164:185) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1967 55.9588 12.1757 REMARK 3 T TENSOR REMARK 3 T11: 0.2343 T22: 0.3368 REMARK 3 T33: 0.3470 T12: 0.0448 REMARK 3 T13: 0.0345 T23: 0.0889 REMARK 3 L TENSOR REMARK 3 L11: 1.0559 L22: 1.2589 REMARK 3 L33: 1.2659 L12: 0.7853 REMARK 3 L13: 0.3743 L23: 0.1511 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: 0.2027 S13: 0.1486 REMARK 3 S21: 0.4203 S22: 0.0287 S23: -0.2823 REMARK 3 S31: -0.1396 S32: 0.7977 S33: 0.2266 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 186:211) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2315 63.2534 13.4730 REMARK 3 T TENSOR REMARK 3 T11: 0.3442 T22: 0.1682 REMARK 3 T33: 0.3167 T12: -0.0044 REMARK 3 T13: -0.0464 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.4060 L22: 0.9331 REMARK 3 L33: 0.0911 L12: -0.7777 REMARK 3 L13: 0.0679 L23: 0.0890 REMARK 3 S TENSOR REMARK 3 S11: -0.2130 S12: 0.0127 S13: 0.2478 REMARK 3 S21: 0.5513 S22: -0.0331 S23: -0.7788 REMARK 3 S31: -0.2251 S32: 0.2504 S33: -0.0204 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 72:96) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0359 43.6658 10.1489 REMARK 3 T TENSOR REMARK 3 T11: 0.2784 T22: 0.2103 REMARK 3 T33: 0.3209 T12: -0.0083 REMARK 3 T13: -0.0384 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.4697 L22: 0.5859 REMARK 3 L33: 0.2625 L12: 0.6405 REMARK 3 L13: -0.4156 L23: -0.4031 REMARK 3 S TENSOR REMARK 3 S11: -0.0790 S12: -0.0168 S13: -0.0817 REMARK 3 S21: -0.2638 S22: 0.1255 S23: 0.0894 REMARK 3 S31: 0.0040 S32: -0.1126 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 97:104) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7533 58.8265 23.6160 REMARK 3 T TENSOR REMARK 3 T11: 0.2682 T22: 0.3080 REMARK 3 T33: 0.2633 T12: -0.0033 REMARK 3 T13: -0.0242 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.0858 L22: 0.1480 REMARK 3 L33: 0.1402 L12: -0.0935 REMARK 3 L13: -0.0503 L23: 0.1344 REMARK 3 S TENSOR REMARK 3 S11: 0.4925 S12: -0.5044 S13: 0.4512 REMARK 3 S21: -0.2267 S22: -0.0929 S23: 0.1731 REMARK 3 S31: -0.4522 S32: 0.0915 S33: 0.0050 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 105:117) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4944 52.4307 22.1403 REMARK 3 T TENSOR REMARK 3 T11: 0.2092 T22: 0.6022 REMARK 3 T33: 0.3950 T12: 0.0976 REMARK 3 T13: 0.0107 T23: 0.0558 REMARK 3 L TENSOR REMARK 3 L11: 0.2743 L22: 0.6357 REMARK 3 L33: 1.1845 L12: 0.2567 REMARK 3 L13: 0.1550 L23: -0.5172 REMARK 3 S TENSOR REMARK 3 S11: 0.1382 S12: 0.4535 S13: 0.6148 REMARK 3 S21: 0.1782 S22: 0.1495 S23: 1.1409 REMARK 3 S31: -0.2272 S32: -1.1100 S33: 0.2214 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 118:122) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2131 41.5989 20.2396 REMARK 3 T TENSOR REMARK 3 T11: 0.4622 T22: 1.0413 REMARK 3 T33: 0.4011 T12: -0.1399 REMARK 3 T13: 0.0240 T23: 0.1301 REMARK 3 L TENSOR REMARK 3 L11: 0.0096 L22: 0.0496 REMARK 3 L33: 0.0164 L12: -0.0108 REMARK 3 L13: -0.0099 L23: -0.0164 REMARK 3 S TENSOR REMARK 3 S11: -0.2766 S12: 0.4027 S13: -0.3674 REMARK 3 S21: -0.2772 S22: 0.1237 S23: -0.2478 REMARK 3 S31: -0.0774 S32: -0.0870 S33: -0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 123:141) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0888 50.3977 13.9876 REMARK 3 T TENSOR REMARK 3 T11: 0.2895 T22: 0.4637 REMARK 3 T33: 0.2456 T12: 0.0334 REMARK 3 T13: -0.0217 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.5818 L22: 0.2274 REMARK 3 L33: 0.2797 L12: 0.1641 REMARK 3 L13: -0.2593 L23: 0.0672 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: 0.0899 S13: 0.3450 REMARK 3 S21: 0.0078 S22: 0.0922 S23: -0.0256 REMARK 3 S31: -0.0197 S32: -0.6056 S33: 0.0384 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 142:153) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5143 56.2321 6.5103 REMARK 3 T TENSOR REMARK 3 T11: 0.3715 T22: 0.1766 REMARK 3 T33: 0.2509 T12: 0.0664 REMARK 3 T13: -0.0270 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.3022 L22: 0.2385 REMARK 3 L33: 0.9901 L12: 0.0047 REMARK 3 L13: -0.0372 L23: 0.4810 REMARK 3 S TENSOR REMARK 3 S11: 0.3684 S12: 0.3204 S13: -0.0044 REMARK 3 S21: 0.3915 S22: -0.3406 S23: 0.2563 REMARK 3 S31: 0.1442 S32: -0.3727 S33: -0.0717 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 154:166) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3481 40.6224 7.2874 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.3896 REMARK 3 T33: 0.3072 T12: -0.0541 REMARK 3 T13: -0.0988 T23: -0.0776 REMARK 3 L TENSOR REMARK 3 L11: 0.1822 L22: 0.6200 REMARK 3 L33: 1.4570 L12: 0.0696 REMARK 3 L13: -0.0343 L23: -0.2734 REMARK 3 S TENSOR REMARK 3 S11: -0.1283 S12: 0.0161 S13: -0.0263 REMARK 3 S21: -0.2573 S22: 0.3314 S23: 0.2554 REMARK 3 S31: 0.2713 S32: -1.2066 S33: 0.0290 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 167:185) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5264 44.7271 25.1571 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.4757 REMARK 3 T33: 0.2672 T12: -0.0998 REMARK 3 T13: -0.0058 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.3311 L22: 0.4275 REMARK 3 L33: 0.5611 L12: -0.3275 REMARK 3 L13: -0.5033 L23: 0.5038 REMARK 3 S TENSOR REMARK 3 S11: 0.3795 S12: -0.6146 S13: 0.0045 REMARK 3 S21: 0.3478 S22: -0.2881 S23: 0.0547 REMARK 3 S31: 0.3231 S32: -0.7479 S33: 0.0294 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 186:206) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8029 39.7872 19.1408 REMARK 3 T TENSOR REMARK 3 T11: 0.2258 T22: 0.2299 REMARK 3 T33: 0.2705 T12: -0.0506 REMARK 3 T13: -0.0028 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.1491 L22: 0.8959 REMARK 3 L33: 1.0791 L12: 0.1076 REMARK 3 L13: -0.2936 L23: 0.5540 REMARK 3 S TENSOR REMARK 3 S11: 0.1528 S12: -0.2271 S13: 0.0257 REMARK 3 S21: 0.8878 S22: -0.2536 S23: -0.1137 REMARK 3 S31: 0.9057 S32: -0.5412 S33: -0.0090 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 207:211) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9507 27.6228 4.8773 REMARK 3 T TENSOR REMARK 3 T11: 0.6783 T22: 0.5355 REMARK 3 T33: 0.4670 T12: -0.3154 REMARK 3 T13: 0.1600 T23: -0.0789 REMARK 3 L TENSOR REMARK 3 L11: 0.2564 L22: 0.4362 REMARK 3 L33: 1.5467 L12: -0.0013 REMARK 3 L13: -0.1695 L23: -0.2585 REMARK 3 S TENSOR REMARK 3 S11: -0.6507 S12: 0.4268 S13: -0.0128 REMARK 3 S21: -0.8201 S22: -0.0008 S23: -0.6538 REMARK 3 S31: -0.3104 S32: 0.6272 S33: -0.1162 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 72:117 OR RESSEQ REMARK 3 123:211 ) REMARK 3 SELECTION : CHAIN 'B' AND (RESSEQ 72:117 OR RESSEQ REMARK 3 123:211 ) REMARK 3 ATOM PAIRS NUMBER : 1121 REMARK 3 RMSD : 0.731 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SXZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15441 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB: 3FMS, CHAIN A, 72-211 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS PH 8.0, 100 MM NACL, 1M TRI REMARK 280 -SODIUM CITRATE, 0.1M SODIUM CACODYLATE PH 6.5, 10 MM EDTA, 2 MM REMARK 280 DTT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.15933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.57967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.57967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.15933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY A 103 NH2 ARG B 172 5665 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FMS RELATED DB: PDB REMARK 900 FULL-LENGTH NI2+-BOUND STRUCTURE OF TM0439, A FCD FAMILY REMARK 900 TRANSCRIPTIONAL REGULATOR (SER MUTATION E118A, K119A, K122A) REMARK 900 RELATED ID: 3SXK RELATED DB: PDB REMARK 900 ZN2+-BOUND FCD DOMAIN OF TM0439 A PUTATIVE TRANSCRIPTIONAL REMARK 900 REGULATOR (SER MUTATION E118A, K119A, K122A) REMARK 900 RELATED ID: 3SXM RELATED DB: PDB REMARK 900 METAL-FREE FCD DOMAIN OF TM0439 A PUTATIVE TRANSCRIPTIONAL REMARK 900 REGULATOR (SER MUTATION E118A, K119A, K122A) REMARK 900 RELATED ID: 3SXY RELATED DB: PDB REMARK 900 FULL-LENGTH METAL-FREE STRUCTURE OF TM0439, A FCD FAMILY REMARK 900 TRANSCRIPTIONAL REGULATOR REMARK 900 RELATED ID: ISFI335 RELATED DB: TARGETDB DBREF 3SXZ A 75 211 UNP Q9WYS0 Q9WYS0_THEMA 75 211 DBREF 3SXZ B 75 211 UNP Q9WYS0 Q9WYS0_THEMA 75 211 SEQADV 3SXZ GLY A 72 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXZ ALA A 73 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXZ MET A 74 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXZ GLY B 72 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXZ ALA B 73 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXZ MET B 74 UNP Q9WYS0 EXPRESSION TAG SEQRES 1 A 140 GLY ALA MET ASP GLU LYS PHE ILE ARG GLU THR ILE GLU SEQRES 2 A 140 THR ARG ILE MET MET GLU VAL PHE CYS LEU GLU ASN TYR SEQRES 3 A 140 PHE ASP LYS ILE ALA GLY SER GLU GLU LEU LEU GLU ILE SEQRES 4 A 140 LYS GLY GLU ILE ASP ASP VAL GLU LYS SER ALA LYS ARG SEQRES 5 A 140 GLU ILE PHE ASP ASP SER ASP GLU ARG LEU HIS LYS LEU SEQRES 6 A 140 PHE ILE ARG ALA SER GLY ASN GLU LEU ILE ILE SER LEU SEQRES 7 A 140 TYR GLU LYS ILE TRP ASP ARG ILE ASP LEU VAL ARG HIS SEQRES 8 A 140 LEU ASN GLU ARG TYR VAL VAL SER ASN ARG GLU HIS LYS SEQRES 9 A 140 GLU LEU ILE GLU ARG ILE ILE SER GLY ASP LYS GLU GLY SEQRES 10 A 140 ALA ILE GLU LYS LEU LYS GLU HIS LEU LYS ASN VAL GLU SEQRES 11 A 140 ALA GLU THR ILE LYS ASN LEU TYR THR TYR SEQRES 1 B 140 GLY ALA MET ASP GLU LYS PHE ILE ARG GLU THR ILE GLU SEQRES 2 B 140 THR ARG ILE MET MET GLU VAL PHE CYS LEU GLU ASN TYR SEQRES 3 B 140 PHE ASP LYS ILE ALA GLY SER GLU GLU LEU LEU GLU ILE SEQRES 4 B 140 LYS GLY GLU ILE ASP ASP VAL GLU LYS SER ALA LYS ARG SEQRES 5 B 140 GLU ILE PHE ASP ASP SER ASP GLU ARG LEU HIS LYS LEU SEQRES 6 B 140 PHE ILE ARG ALA SER GLY ASN GLU LEU ILE ILE SER LEU SEQRES 7 B 140 TYR GLU LYS ILE TRP ASP ARG ILE ASP LEU VAL ARG HIS SEQRES 8 B 140 LEU ASN GLU ARG TYR VAL VAL SER ASN ARG GLU HIS LYS SEQRES 9 B 140 GLU LEU ILE GLU ARG ILE ILE SER GLY ASP LYS GLU GLY SEQRES 10 B 140 ALA ILE GLU LYS LEU LYS GLU HIS LEU LYS ASN VAL GLU SEQRES 11 B 140 ALA GLU THR ILE LYS ASN LEU TYR THR TYR FORMUL 3 HOH *71(H2 O) HELIX 1 1 ASP A 75 TYR A 97 1 23 HELIX 2 2 TYR A 97 GLY A 103 1 7 HELIX 3 3 SER A 104 VAL A 117 1 14 HELIX 4 4 ARG A 123 ALA A 140 1 18 HELIX 5 5 ASN A 143 ILE A 153 1 11 HELIX 6 6 ILE A 153 HIS A 162 1 10 HELIX 7 7 ARG A 166 SER A 183 1 18 HELIX 8 8 ASP A 185 TYR A 211 1 27 HELIX 9 9 ASP B 75 TYR B 97 1 23 HELIX 10 10 TYR B 97 GLY B 103 1 7 HELIX 11 11 SER B 104 SER B 120 1 17 HELIX 12 12 LYS B 122 ALA B 140 1 19 HELIX 13 13 ASN B 143 HIS B 162 1 20 HELIX 14 14 ARG B 166 SER B 183 1 18 HELIX 15 15 ASP B 185 TYR B 209 1 25 CRYST1 80.890 80.890 91.739 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012362 0.007137 0.000000 0.00000 SCALE2 0.000000 0.014275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010900 0.00000 MTRIX1 1 -0.775357 -0.129024 0.618202 -9.74146 1 MTRIX2 1 -0.127235 -0.926918 -0.353036 101.40800 1 MTRIX3 1 0.618573 -0.352386 0.702276 24.46410 1